Hierarchy For Package picard.fingerprint

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractSet<E> (implements java.util.Set<E>)
      • java.util.TreeSet<E> (implements java.lang.Cloneable, java.util.NavigableSet<E>, java.io.Serializable)
        • picard.fingerprint.FingerprintUtils.VariantContextSet
  • java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
    • java.util.TreeMap<K,V> (implements java.lang.Cloneable, java.util.NavigableMap<K,V>, java.io.Serializable)
      • picard.fingerprint.Fingerprint
  • picard.cmdline.CommandLineProgram
    • picard.fingerprint.CalculateFingerprintMetrics
    • picard.fingerprint.CheckFingerprint
    • picard.fingerprint.ClusterCrosscheckMetrics
    • picard.fingerprint.CrosscheckFingerprints
      • picard.fingerprint.CrosscheckReadGroupFingerprints
    • picard.fingerprint.ExtractFingerprint
    • picard.fingerprint.IdentifyContaminant
    • picard.fingerprint.LiftOverHaplotypeMap
  • picard.fingerprint.FingerprintChecker
  • picard.fingerprint.FingerprintIdDetails
  • picard.fingerprint.FingerprintResults
  • picard.fingerprint.FingerprintUtils
  • picard.fingerprint.HaplotypeBlock (implements java.lang.Comparable<T>)
  • picard.fingerprint.HaplotypeMap
  • picard.fingerprint.HaplotypeProbabilities
    • picard.fingerprint.CappedHaplotypeProbabilities
    • picard.fingerprint.HaplotypeProbabilitiesFromGenotype
    • picard.fingerprint.HaplotypeProbabilitiesFromGenotypeLikelihoods
    • picard.fingerprint.HaplotypeProbabilitiesFromSequence
      • picard.fingerprint.HaplotypeProbabilitiesFromContaminatorSequence
    • picard.fingerprint.HaplotypeProbabilityOfNormalGivenTumor
  • picard.fingerprint.MatchResults (implements java.lang.Comparable<T>)
  • htsjdk.samtools.metrics.MetricBase
    • picard.fingerprint.CrosscheckMetric
      • picard.fingerprint.ClusteredCrosscheckMetric
    • picard.fingerprint.FingerprintMetrics
  • picard.fingerprint.Snp (implements java.lang.Comparable<T>)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • picard.fingerprint.CrosscheckMetric.DataType
    • picard.fingerprint.HaplotypeProbabilities.Genotype
    • picard.fingerprint.CrosscheckMetric.FingerprintResult
    • picard.fingerprint.DiploidHaplotype
    • picard.fingerprint.DiploidGenotype