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Hierarchy For Package picard.illumina
Package Hierarchies:
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Class Hierarchy
java.lang.Object
picard.illumina.
BasecallsConverter
<CLUSTER_OUTPUT_RECORD>
picard.illumina.
SortedBasecallsConverter
<CLUSTER_OUTPUT_RECORD>
picard.illumina.
UnsortedBasecallsConverter
<CLUSTER_OUTPUT_RECORD>
picard.illumina.
BasecallsConverter.CompletedWorkChecker
(implements java.lang.Runnable)
picard.illumina.
BasecallsConverterBuilder
<CLUSTER_OUTPUT_RECORD>
picard.illumina.
ClusterDataToSamConverter
(implements picard.illumina.
BasecallsConverter.ClusterDataConverter
<OUTPUT_RECORD>)
picard.illumina.
CollectIlluminaLaneMetrics.IlluminaLaneMetricsCollector
picard.cmdline.
CommandLineProgram
picard.illumina.
CheckIlluminaDirectory
picard.illumina.
CollectIlluminaBasecallingMetrics
picard.illumina.
CollectIlluminaLaneMetrics
picard.illumina.
ExtractIlluminaBarcodes
picard.illumina.
IlluminaBasecallsToFastq
picard.illumina.
IlluminaBasecallsToSam
picard.illumina.
MarkIlluminaAdapters
picard.illumina.
ExtractIlluminaBarcodes.PerTileBarcodeExtractor
(implements java.lang.Runnable)
picard.illumina.
ExtractIlluminaBarcodes.PerTileBarcodeExtractor.BarcodeMatch
picard.illumina.
LanePhasingMetricsCollector
htsjdk.samtools.metrics.MetricBase
picard.illumina.
ExtractIlluminaBarcodes.BarcodeMetric
picard.illumina.
IlluminaBasecallingMetrics
picard.illumina.
IlluminaLaneMetrics
picard.illumina.
IlluminaPhasingMetrics
Interface Hierarchy
picard.illumina.
BasecallsConverter.ClusterDataConverter
<OUTPUT_RECORD>
picard.illumina.
BasecallsConverter.ConvertedClusterDataWriter
<OUTPUT_RECORD>
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
picard.illumina.
IlluminaBasecallsToFastq.ReadNameFormat
picard.illumina.
DistanceMetric
(implements org.broadinstitute.barclay.argparser.CommandLineParser.ClpEnum)
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