Hierarchy For Package picard.illumina

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • picard.illumina.BasecallsConverter<CLUSTER_OUTPUT_RECORD>
    • picard.illumina.SortedBasecallsConverter<CLUSTER_OUTPUT_RECORD>
    • picard.illumina.UnsortedBasecallsConverter<CLUSTER_OUTPUT_RECORD>
  • picard.illumina.BasecallsConverter.CompletedWorkChecker (implements java.lang.Runnable)
  • picard.illumina.BasecallsConverterBuilder<CLUSTER_OUTPUT_RECORD>
  • picard.illumina.ClusterDataToSamConverter (implements picard.illumina.BasecallsConverter.ClusterDataConverter<OUTPUT_RECORD>)
  • picard.illumina.CollectIlluminaLaneMetrics.IlluminaLaneMetricsCollector
  • picard.cmdline.CommandLineProgram
    • picard.illumina.CheckIlluminaDirectory
    • picard.illumina.CollectIlluminaBasecallingMetrics
    • picard.illumina.CollectIlluminaLaneMetrics
    • picard.illumina.ExtractIlluminaBarcodes
    • picard.illumina.IlluminaBasecallsToFastq
    • picard.illumina.IlluminaBasecallsToSam
    • picard.illumina.MarkIlluminaAdapters
  • picard.illumina.ExtractIlluminaBarcodes.PerTileBarcodeExtractor (implements java.lang.Runnable)
  • picard.illumina.ExtractIlluminaBarcodes.PerTileBarcodeExtractor.BarcodeMatch
  • picard.illumina.LanePhasingMetricsCollector
  • htsjdk.samtools.metrics.MetricBase
    • picard.illumina.ExtractIlluminaBarcodes.BarcodeMetric
    • picard.illumina.IlluminaBasecallingMetrics
    • picard.illumina.IlluminaLaneMetrics
    • picard.illumina.IlluminaPhasingMetrics

Interface Hierarchy

• picard.illumina.BasecallsConverter.ClusterDataConverter<OUTPUT_RECORD>
• picard.illumina.BasecallsConverter.ConvertedClusterDataWriter<OUTPUT_RECORD>

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • picard.illumina.IlluminaBasecallsToFastq.ReadNameFormat
    • picard.illumina.DistanceMetric (implements org.broadinstitute.barclay.argparser.CommandLineParser.ClpEnum)