Package org.broadinstitute.hellbender.exceptions

Class GATKException

java.lang.Object

java.lang.Throwable

java.lang.Exception

java.lang.RuntimeException

org.broadinstitute.hellbender.exceptions.GATKException

All Implemented Interfaces:

Serializable

Direct Known Subclasses:

FuncotatorUtils.TranscriptCodingSequenceException, GATKException.MissingReadField, GATKException.ReadAttributeTypeMismatch, GATKException.ShouldNeverReachHereException, LocationTranslationException, ScriptExecutorException

public class GATKException
extends RuntimeException

Class GATKException.

This exception is for errors that are beyond the user's control, such as internal pre/post condition failures and "this should never happen" kinds of scenarios.

See Also:

• Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	GATKException.MissingReadField
static class	GATKException.ReadAttributeTypeMismatch
static class	GATKException.ShouldNeverReachHereException	For wrapping errors that are believed to never be reachable

Constructor Summary

Constructors

Constructor	Description
GATKException(String msg)
GATKException(String message, Throwable throwable)

Method Summary

Methods inherited from class java.lang.Throwable

addSuppressed, fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, getSuppressed, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

GATKException

public GATKException(String msg)

GATKException

public GATKException(String message,
 Throwable throwable)