Hierarchy For Package org.broadinstitute.hellbender.exceptions

Package Hierarchies:

• All Packages

Class Hierarchy

• java.lang.Object
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • org.broadinstitute.hellbender.exceptions.GATKException
          • org.broadinstitute.hellbender.exceptions.GATKException.MissingReadField
          • org.broadinstitute.hellbender.exceptions.GATKException.ReadAttributeTypeMismatch
          • org.broadinstitute.hellbender.exceptions.GATKException.ShouldNeverReachHereException
        • org.broadinstitute.hellbender.exceptions.PicardNonZeroExitException
        • org.broadinstitute.hellbender.exceptions.UserException
          • org.broadinstitute.hellbender.exceptions.UserException.BadInput
          • org.broadinstitute.hellbender.exceptions.UserException.BadTempDir
          • org.broadinstitute.hellbender.exceptions.UserException.CannotExecuteScript
          • org.broadinstitute.hellbender.exceptions.UserException.CannotHandleGzippedRef
          • org.broadinstitute.hellbender.exceptions.UserException.CouldNotCreateOutputFile
          • org.broadinstitute.hellbender.exceptions.UserException.CouldNotIndexFile
          • org.broadinstitute.hellbender.exceptions.UserException.CouldNotReadInputFile
          • org.broadinstitute.hellbender.exceptions.UserException.EmptyIntersection
          • org.broadinstitute.hellbender.exceptions.UserException.FailsStrictValidation
          • org.broadinstitute.hellbender.exceptions.UserException.HardwareFeatureException
          • org.broadinstitute.hellbender.exceptions.UserException.IncompatibleRecalibrationTableParameters
          • org.broadinstitute.hellbender.exceptions.UserException.IncompatibleSequenceDictionaries
          • org.broadinstitute.hellbender.exceptions.UserException.LexicographicallySortedSequenceDictionary
          • org.broadinstitute.hellbender.exceptions.UserException.MalformedBAM
            • org.broadinstitute.hellbender.exceptions.UserException.HeaderMissingReadGroup
            • org.broadinstitute.hellbender.exceptions.UserException.ReadMissingReadGroup
          • org.broadinstitute.hellbender.exceptions.UserException.MalformedFile
          • org.broadinstitute.hellbender.exceptions.UserException.MalformedGenomeLoc
          • org.broadinstitute.hellbender.exceptions.UserException.MalformedRead
            • org.broadinstitute.hellbender.exceptions.UserException.MisencodedQualityScoresRead
          • org.broadinstitute.hellbender.exceptions.UserException.MissingContigInSequenceDictionary
          • org.broadinstitute.hellbender.exceptions.UserException.MissingIndex
          • org.broadinstitute.hellbender.exceptions.UserException.MissingReference
          • org.broadinstitute.hellbender.exceptions.UserException.MissingReferenceDictFile
          • org.broadinstitute.hellbender.exceptions.UserException.MissingReferenceFaiFile
          • org.broadinstitute.hellbender.exceptions.UserException.MissingReferenceGziFile
          • org.broadinstitute.hellbender.exceptions.UserException.NoSuitableCodecs
          • org.broadinstitute.hellbender.exceptions.UserException.SequenceDictionaryIsMissingContigLengths
          • org.broadinstitute.hellbender.exceptions.UserException.UnimplementedFeature
          • org.broadinstitute.hellbender.exceptions.UserException.ValidationFailure
          • org.broadinstitute.hellbender.exceptions.UserException.VQSRNegativeModelFailure
          • org.broadinstitute.hellbender.exceptions.UserException.VQSRPositiveModelFailure
          • org.broadinstitute.hellbender.exceptions.UserException.WarnableAnnotationFailure
          • org.broadinstitute.hellbender.exceptions.UserException.WrongFeatureType