Package org.broadinstitute.hellbender.tools

Class ClipReads.ClippingData

java.lang.Object
org.broadinstitute.hellbender.tools.ClipReads.ClippingData
Enclosing class:
ClipReads
public final class ClipReads.ClippingData extends Object

  • Field Details

    • nTotalReads

      public long nTotalReads

    • nTotalBases

      public long nTotalBases

    • nClippedReads

      public long nClippedReads

    • nClippedBases

      public long nClippedBases

    • nQClippedBases

      public long nQClippedBases

    • nRangeClippedBases

      public long nRangeClippedBases

    • nSeqClippedBases

      public long nSeqClippedBases

    • nAdapterClippedBases

      public long nAdapterClippedBases

  • Constructor Details

    • ClippingData

      public ClippingData(List<org.broadinstitute.hellbender.tools.ClipReads.SeqToClip> clipSeqs)

  • Method Details

    • incNQClippedBases

      public void incNQClippedBases(int n)

    • incNRangeClippedBases

      public void incNRangeClippedBases(int n)

    • incNAdapterClippedBases

      public void incNAdapterClippedBases(int n)

    • incSeqClippedBases

      public void incSeqClippedBases(String seq, int n)

    • addData

      public void addData(ClipReads.ClippingData data)

    • toString

      public String toString()
      Overrides:
      toString in class Object