Package org.broadinstitute.hellbender.tools.spark.sv.evidence

Class BreakpointEvidence.ExternalEvidence

java.lang.Object

org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence

org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence.ExternalEvidence

Enclosing class:

BreakpointEvidence

public static final class BreakpointEvidence.ExternalEvidence
extends BreakpointEvidence

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static final class	BreakpointEvidence.ExternalEvidence.Serializer

Nested classes/interfaces inherited from class org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence

BreakpointEvidence.DiscordantReadPairEvidence, BreakpointEvidence.ExternalEvidence, BreakpointEvidence.InterContigPair, BreakpointEvidence.LargeIndel, BreakpointEvidence.MateUnmapped, BreakpointEvidence.OutiesPair, BreakpointEvidence.ReadEvidence, BreakpointEvidence.SameStrandPair, BreakpointEvidence.SplitRead, BreakpointEvidence.TemplateSizeAnomaly, BreakpointEvidence.WeirdTemplateSize

Constructor Summary

Constructors

Constructor	Description
ExternalEvidence(int contigID, int start, int end, int weight)
ExternalEvidence(com.esotericsoftware.kryo.Kryo kryo, com.esotericsoftware.kryo.io.Input input)
ExternalEvidence(SVInterval interval, int weight)

Method Summary

Modifier and Type	Method	Description
String	toString()

Methods inherited from class org.broadinstitute.hellbender.tools.spark.sv.evidence.BreakpointEvidence

equals, getDistalTargets, getLocation, getWeight, hasDistalTargets, hashCode, isEvidenceUpstreamOfBreakpoint, isValidated, serialize, setValidated, stringRep

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

ExternalEvidence

public ExternalEvidence(int contigID,
 int start,
 int end,
 int weight)

ExternalEvidence

public ExternalEvidence(SVInterval interval,
 int weight)

ExternalEvidence

public ExternalEvidence(com.esotericsoftware.kryo.Kryo kryo,
 com.esotericsoftware.kryo.io.Input input)

Method Details

toString

public String toString()

Overrides:

toString in class BreakpointEvidence