Package org.broadinstitute.hellbender.tools.spark.sv.utils

Class GATKSVVCFHeaderLines

java.lang.Object

org.broadinstitute.hellbender.tools.spark.sv.utils.GATKSVVCFHeaderLines

public final class GATKSVVCFHeaderLines
extends Object

Constructor Summary

Constructors

Constructor	Description
GATKSVVCFHeaderLines()

Method Summary

Modifier and Type	Method	Description
static htsjdk.variant.vcf.VCFFilterHeaderLine	getFilterLine(String id)
static Set<htsjdk.variant.vcf.VCFFilterHeaderLine>	getFilterLines()
static htsjdk.variant.vcf.VCFFormatHeaderLine	getFormatLine(String id)
static Set<htsjdk.variant.vcf.VCFFormatHeaderLine>	getFormatLines()
static htsjdk.variant.vcf.VCFInfoHeaderLine	getInfoLine(String id)
static Set<htsjdk.variant.vcf.VCFInfoHeaderLine>	getInfoLines()
static htsjdk.variant.vcf.VCFSimpleHeaderLine	getSymbAltAlleleLine(String id)
static Set<htsjdk.variant.vcf.VCFSimpleHeaderLine>	getSymbAltAlleleLines()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

GATKSVVCFHeaderLines

public GATKSVVCFHeaderLines()

Method Details

getInfoLine

public static htsjdk.variant.vcf.VCFInfoHeaderLine getInfoLine(String id)

getInfoLines

public static Set<htsjdk.variant.vcf.VCFInfoHeaderLine> getInfoLines()

getFormatLine

public static htsjdk.variant.vcf.VCFFormatHeaderLine getFormatLine(String id)

getFormatLines

public static Set<htsjdk.variant.vcf.VCFFormatHeaderLine> getFormatLines()

getFilterLine

public static htsjdk.variant.vcf.VCFFilterHeaderLine getFilterLine(String id)

getFilterLines

public static Set<htsjdk.variant.vcf.VCFFilterHeaderLine> getFilterLines()

getSymbAltAlleleLine

public static htsjdk.variant.vcf.VCFSimpleHeaderLine getSymbAltAlleleLine(String id)

getSymbAltAlleleLines

public static Set<htsjdk.variant.vcf.VCFSimpleHeaderLine> getSymbAltAlleleLines()