Package org.broadinstitute.hellbender.tools.spark.sv.utils
package org.broadinstitute.hellbender.tools.spark.sv.utils
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ClassDescriptionA Spark Partitioner that puts tasks with greater complexities into earlier partitions.Subsets reads by name (basically a parallel version of "grep -f", or "grep -vf")A <Kmer,count> pair.Encompasses an aligner to a single-sequence reference.Represents an interval and strand from the reference genome.Variant context with additional method to mine the structural variant specific information from structural variant records.An iterator over kmers with a specified maximum DUST-style, low-complexity score.Memory-economical utilities for producing a FASTQ file.Iterator over successive Kmers from a sequence of characters.An immutable SVKmerLong.An immutable SVKmerShort.Useful scraps of this and that.A utility class that writes out variants to a VCF file.