Package org.broadinstitute.hellbender.tools.sv

Interface SVFeature

All Superinterfaces:
htsjdk.tribble.Feature, htsjdk.samtools.util.Locatable
All Known Implementing Classes:
BafEvidence, DepthEvidence, DiscordantPairEvidence, SiteDepth, SplitReadEvidence
public interface SVFeature extends htsjdk.tribble.Feature

  • Method Summary

    Modifier and Type
    Method
    Description
    SVFeature
    extractSamples(Set<String> sampleNames, Object header)
     

    Methods inherited from interface htsjdk.tribble.Feature

    getChr

    Methods inherited from interface htsjdk.samtools.util.Locatable

    contains, contigsMatch, getContig, getEnd, getLengthOnReference, getStart, overlaps, withinDistanceOf