Package org.broadinstitute.hellbender.tools.walkers.rnaseq

Class OverhangFixingManager.Splice

java.lang.Object

org.broadinstitute.hellbender.tools.walkers.rnaseq.OverhangFixingManager.Splice

Enclosing class:

OverhangFixingManager

protected final class OverhangFixingManager.Splice
extends Object

Field Summary

Fields

Modifier and Type	Field	Description
final GenomeLoc	loc
byte[]	reference

Constructor Summary

Constructors

Constructor	Description
Splice(String contig, int start, int end)

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object other)
int	hashCode()
void	initialize(htsjdk.samtools.reference.ReferenceSequenceFile referenceReader)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Details

loc

public final GenomeLoc loc

reference

public byte[] reference

Constructor Details

Splice

public Splice(String contig,
 int start,
 int end)

Method Details

initialize

public void initialize(htsjdk.samtools.reference.ReferenceSequenceFile referenceReader)

equals

public boolean equals(Object other)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object