Package org.broadinstitute.hellbender.transformers

Class BaseQualityReadTransformer

java.lang.Object

org.broadinstitute.hellbender.transformers.BaseQualityReadTransformer

All Implemented Interfaces:

Serializable, Function<GATKRead,GATKRead>, UnaryOperator<GATKRead>, ReadTransformer, SerializableFunction<GATKRead,GATKRead>

public final class BaseQualityReadTransformer
extends Object
implements ReadTransformer

See Also:

• Serialized Form

Constructor Summary

Constructors

Constructor	Description
BaseQualityReadTransformer()
BaseQualityReadTransformer(int quality_threshold)

Method Summary

Modifier and Type	Method	Description
GATKRead	apply(GATKRead read)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.function.Function

andThen, compose

Methods inherited from interface org.broadinstitute.hellbender.transformers.ReadTransformer

andThen, compose

Constructor Details

BaseQualityReadTransformer

public BaseQualityReadTransformer()

BaseQualityReadTransformer

public BaseQualityReadTransformer(int quality_threshold)

Method Details

apply

public GATKRead apply(GATKRead read)

Specified by:

apply in interface Function<GATKRead,GATKRead>

Specified by:

apply in interface SerializableFunction<GATKRead,GATKRead>