Class Hierarchy
- java.lang.Object
- org.broadinstitute.hellbender.transformers.AdapterTrimTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
- org.broadinstitute.hellbender.transformers.BaseQualityClipReadTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
- org.broadinstitute.hellbender.transformers.BaseQualityReadTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
- org.broadinstitute.hellbender.transformers.BQSRReadTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
- org.broadinstitute.hellbender.transformers.DRAGENMappingQualityReadTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
- org.broadinstitute.hellbender.transformers.DUSTReadTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
- org.broadinstitute.hellbender.transformers.IUPACReadTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
- org.broadinstitute.hellbender.transformers.MappingQualityReadTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
- org.broadinstitute.hellbender.transformers.MisencodedBaseQualityReadTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
- org.broadinstitute.hellbender.transformers.NDNCigarReadTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
- org.broadinstitute.hellbender.transformers.PalindromeArtifactClipReadTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
- org.broadinstitute.hellbender.transformers.SimpleRepeatMaskTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
- org.broadinstitute.hellbender.transformers.StripMateNumberTransformer (implements org.broadinstitute.hellbender.transformers.ReadTransformer)
Interface Hierarchy
- java.util.function.Function<T,
R> - org.broadinstitute.hellbender.utils.SerializableFunction<T,
R> (also extends java.io.Serializable) - org.broadinstitute.hellbender.transformers.ReadTransformer (also extends java.util.function.UnaryOperator<T>)
- org.broadinstitute.hellbender.transformers.VariantTransformer (also extends java.util.function.UnaryOperator<T>)
- java.util.function.UnaryOperator<T>
- org.broadinstitute.hellbender.transformers.ReadTransformer (also extends org.broadinstitute.hellbender.utils.SerializableFunction<T,
R>) - org.broadinstitute.hellbender.transformers.VariantTransformer (also extends org.broadinstitute.hellbender.utils.SerializableFunction<T,
R>)
- org.broadinstitute.hellbender.transformers.ReadTransformer (also extends org.broadinstitute.hellbender.utils.SerializableFunction<T,
- org.broadinstitute.hellbender.utils.SerializableFunction<T,
- java.io.Serializable
- org.broadinstitute.hellbender.utils.SerializableFunction<T,
R> (also extends java.util.function.Function<T, R>) - org.broadinstitute.hellbender.transformers.ReadTransformer (also extends java.util.function.UnaryOperator<T>)
- org.broadinstitute.hellbender.transformers.VariantTransformer (also extends java.util.function.UnaryOperator<T>)
- org.broadinstitute.hellbender.utils.SerializableFunction<T,