Package org.broadinstitute.hellbender.transformers

Interface VariantTransformer

All Superinterfaces:

Function<htsjdk.variant.variantcontext.VariantContext,htsjdk.variant.variantcontext.VariantContext>, Serializable, SerializableFunction<htsjdk.variant.variantcontext.VariantContext,htsjdk.variant.variantcontext.VariantContext>, UnaryOperator<htsjdk.variant.variantcontext.VariantContext>

Functional Interface:

This is a functional interface and can therefore be used as the assignment target for a lambda expression or method reference.

@FunctionalInterface
public interface VariantTransformer
extends UnaryOperator<htsjdk.variant.variantcontext.VariantContext>, SerializableFunction<htsjdk.variant.variantcontext.VariantContext,htsjdk.variant.variantcontext.VariantContext>

Classes which perform transformations from VariantContext -> VariantContext should implement this interface by overriding < VariantContext ,VariantContext>#apply(VariantContext) Created by jonn on 6/26/18.

Field Summary

Fields

Modifier and Type	Field	Description
static final long	serialVersionUID

Method Summary

Modifier and Type	Method	Description
default VariantTransformer	andThen(VariantTransformer after)
default VariantTransformer	compose(VariantTransformer before)
static VariantTransformer	identity()

Methods inherited from interface java.util.function.Function

andThen, compose

Methods inherited from interface org.broadinstitute.hellbender.utils.SerializableFunction

apply

Field Details

serialVersionUID

static final long serialVersionUID

See Also:

• Constant Field Values

Method Details

andThen

default VariantTransformer andThen(VariantTransformer after)

compose

default VariantTransformer compose(VariantTransformer before)

identity

static VariantTransformer identity()