Package org.broadinstitute.hellbender.utils

Class BinaryTableWriter<R>

java.lang.Object

org.broadinstitute.hellbender.utils.BinaryTableWriter<R>

Type Parameters:

R - record type.

All Implemented Interfaces:

AutoCloseable

public abstract class BinaryTableWriter<R>
extends Object
implements AutoCloseable

Abstract file writing class for record tables stored in binary format.

Field Summary

Fields

Modifier and Type	Field	Description
protected final DataOutputStream	dataOut

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	BinaryTableWriter(OutputStream out, String path)

Method Summary

Modifier and Type	Method	Description
void	close()
void	flush()
String	getPath()
long	numberOfRecords()
long	offset()
void	write(R record)
void	writeAll(Iterable<? extends R> records)
protected abstract void	writeRecord(R record, DataOutput output)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

dataOut

protected final DataOutputStream dataOut

Constructor Details

BinaryTableWriter

protected BinaryTableWriter(OutputStream out,
 String path)

Method Details

offset

public long offset()

getPath

public String getPath()

writeRecord

protected abstract void writeRecord(R record,
 DataOutput output)
                             throws IOException

Throws:

IOException

write

public void write(R record)
           throws IOException

Throws:

IOException

writeAll

public void writeAll(Iterable<? extends R> records)
              throws IOException

Throws:

IOException

close

public void close()
           throws IOException

Specified by:

close in interface AutoCloseable

Throws:

IOException

flush

public void flush()
           throws IOException

Throws:

IOException

numberOfRecords

public long numberOfRecords()