Package org.broadinstitute.hellbender.utils.codecs.gtf

Enum Class GencodeGtfFeature.LocusLevel

java.lang.Object

java.lang.Enum<GencodeGtfFeature.LocusLevel>

org.broadinstitute.hellbender.utils.codecs.gtf.GencodeGtfFeature.LocusLevel

All Implemented Interfaces:

Serializable, Comparable<GencodeGtfFeature.LocusLevel>, Constable

Enclosing class:

GencodeGtfFeature

public static enum GencodeGtfFeature.LocusLevel
extends Enum<GencodeGtfFeature.LocusLevel>

Status of how a position was annotated / verified: 1 - verified locus 2 - manually annotated locus 3 - automatically annotated locus For more information, see: https://www.gencodegenes.org/data_format.html https://en.wikipedia.org/wiki/General_feature_format

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
AUTOMATICALLY_ANNOTATED	Automatically annotated locus
MANUALLY_ANNOTATED	Manually annotated locus
VERIFIED	Verified locus

Method Summary

Modifier and Type	Method	Description
static GencodeGtfFeature.LocusLevel	getEnum(String s)
String	toString()
static GencodeGtfFeature.LocusLevel	valueOf(String name)	Returns the enum constant of this class with the specified name.
static GencodeGtfFeature.LocusLevel[]	values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details

VERIFIED

public static final GencodeGtfFeature.LocusLevel VERIFIED

Verified locus

MANUALLY_ANNOTATED

public static final GencodeGtfFeature.LocusLevel MANUALLY_ANNOTATED

Manually annotated locus

AUTOMATICALLY_ANNOTATED

public static final GencodeGtfFeature.LocusLevel AUTOMATICALLY_ANNOTATED

Automatically annotated locus

Method Details

values

public static GencodeGtfFeature.LocusLevel[] values()

Returns an array containing the constants of this enum class, in the order they are declared.

Returns:

an array containing the constants of this enum class, in the order they are declared

valueOf

public static GencodeGtfFeature.LocusLevel valueOf(String name)

Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum class has no constant with the specified name

NullPointerException - if the argument is null

toString

public String toString()

Overrides:

toString in class Enum<GencodeGtfFeature.LocusLevel>

getEnum

public static GencodeGtfFeature.LocusLevel getEnum(String s)