Package org.broadinstitute.hellbender.utils.haplotype
package org.broadinstitute.hellbender.utils.haplotype
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ClassDescriptionExtract simple VariantContext events from a single haplotypeHaplotype that also keeps information on the flow space @see FlowBasedRead Haplotype can't be extended, so this extends AlleleUtility class that allows easy creation of destinations for the HaplotypeBAMWritersA BAMWriter that aligns reads to haplotypes and emits their best alignments to a destination.Possible modes for writing haplotypes to BAMsClass used to direct output from a HaplotypeBAMWriter to a bam/sam file.