Package picard.analysis

Enum Class CollectMultipleMetrics.Program

java.lang.Object

java.lang.Enum<CollectMultipleMetrics.Program>

picard.analysis.CollectMultipleMetrics.Program

All Implemented Interfaces:

Serializable, Comparable<CollectMultipleMetrics.Program>, Constable, org.broadinstitute.barclay.argparser.CommandLineParser.ClpEnum, CollectMultipleMetrics.ProgramInterface

Enclosing class:

CollectMultipleMetrics

public static enum CollectMultipleMetrics.Program
extends Enum<CollectMultipleMetrics.Program>
implements CollectMultipleMetrics.ProgramInterface, org.broadinstitute.barclay.argparser.CommandLineParser.ClpEnum

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
CollectAlignmentSummaryMetrics
CollectBaseDistributionByCycle
CollectGcBiasMetrics
CollectInsertSizeMetrics
CollectQualityYieldMetrics
CollectSequencingArtifactMetrics
MeanQualityByCycle
QualityScoreDistribution
RnaSeqMetrics

Method Summary

Modifier and Type	Method	Description
String	getHelpDoc()
static CollectMultipleMetrics.Program	valueOf(String name)	Returns the enum constant of this class with the specified name.
static CollectMultipleMetrics.Program[]	values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface picard.analysis.CollectMultipleMetrics.ProgramInterface

makeInstance, makeInstance, needsReferenceSequence, needsRefflatFile, supportsMetricAccumulationLevel

Enum Constant Details

CollectAlignmentSummaryMetrics

public static final CollectMultipleMetrics.Program CollectAlignmentSummaryMetrics

CollectInsertSizeMetrics

public static final CollectMultipleMetrics.Program CollectInsertSizeMetrics

QualityScoreDistribution

public static final CollectMultipleMetrics.Program QualityScoreDistribution

MeanQualityByCycle

public static final CollectMultipleMetrics.Program MeanQualityByCycle

CollectBaseDistributionByCycle

public static final CollectMultipleMetrics.Program CollectBaseDistributionByCycle

CollectGcBiasMetrics

public static final CollectMultipleMetrics.Program CollectGcBiasMetrics

RnaSeqMetrics

public static final CollectMultipleMetrics.Program RnaSeqMetrics

CollectSequencingArtifactMetrics

public static final CollectMultipleMetrics.Program CollectSequencingArtifactMetrics

CollectQualityYieldMetrics

public static final CollectMultipleMetrics.Program CollectQualityYieldMetrics

Method Details

values

public static CollectMultipleMetrics.Program[] values()

Returns an array containing the constants of this enum class, in the order they are declared.

Returns:

an array containing the constants of this enum class, in the order they are declared

valueOf

public static CollectMultipleMetrics.Program valueOf(String name)

Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum class has no constant with the specified name

NullPointerException - if the argument is null

getHelpDoc

public String getHelpDoc()

Specified by:

getHelpDoc in interface org.broadinstitute.barclay.argparser.CommandLineParser.ClpEnum