Package picard.util

Enum Class BaitDesigner.DesignStrategy

java.lang.Object

java.lang.Enum<BaitDesigner.DesignStrategy>

picard.util.BaitDesigner.DesignStrategy

All Implemented Interfaces:

Serializable, Comparable<BaitDesigner.DesignStrategy>, Constable

Enclosing class:

BaitDesigner

public static enum BaitDesigner.DesignStrategy
extends Enum<BaitDesigner.DesignStrategy>

Set of possible design strategies for bait design.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
CenteredConstrained	Implementation that "constrains" baits to be within the target region when possible.
FixedOffset	Design that places baits at fixed offsets over targets, allowing them to hang off the ends as dictated by the target size and offset.
Simple	Ultra simple bait design algorithm that just lays down baits starting at the target start position until either the bait start runs off the end of the target or the bait would run off the sequence

Method Summary

Modifier and Type	Method	Description
static BaitDesigner.DesignStrategy	valueOf(String name)	Returns the enum constant of this class with the specified name.
static BaitDesigner.DesignStrategy[]	values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details

CenteredConstrained

public static final BaitDesigner.DesignStrategy CenteredConstrained

Implementation that "constrains" baits to be within the target region when possible.

FixedOffset

public static final BaitDesigner.DesignStrategy FixedOffset

Design that places baits at fixed offsets over targets, allowing them to hang off the ends as dictated by the target size and offset.

Simple

public static final BaitDesigner.DesignStrategy Simple

Ultra simple bait design algorithm that just lays down baits starting at the target start position until either the bait start runs off the end of the target or the bait would run off the sequence

Method Details

values

public static BaitDesigner.DesignStrategy[] values()

Returns an array containing the constants of this enum class, in the order they are declared.

Returns:

an array containing the constants of this enum class, in the order they are declared

valueOf

public static BaitDesigner.DesignStrategy valueOf(String name)

Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum class has no constant with the specified name

NullPointerException - if the argument is null