Class

org.clulab.reach.assembly.representations

PTM

Related Doc: package representations

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case class PTM(label: String, site: Option[String], negated: Boolean = false) extends AssemblyModification with Product with Serializable

A representation of a post-translational modification (PTM) ( Phosphorylation, Ubiquitination, etc.) associated with an Entity.

label

the ptm

site

an Option[String] representing the Site of the PTM

Linear Supertypes
Serializable, Serializable, Product, Equals, AssemblyModification, AnyRef, Any
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Inherited
  1. PTM
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AssemblyModification
  7. AnyRef
  8. Any
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Visibility
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Instance Constructors

  1. new PTM(label: String)

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  2. new PTM(label: String, site: Option[String], negated: Boolean = false)

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    label

    the ptm

    site

    an Option[String] representing the Site of the PTM

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  7. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  8. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  9. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  10. val label: String

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    the ptm

  11. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  12. val negated: Boolean

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  13. final def notify(): Unit

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    Definition Classes
    AnyRef

  14. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  15. val site: Option[String]

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    an Option[String] representing the Site of the PTM

  16. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  17. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  18. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  19. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AssemblyModification

Inherited from AnyRef

Inherited from Any

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