Package

org.clulab.reach

assembly

Permalink

package assembly

Linear Supertypes
AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. assembly
  2. AnyRef
  3. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Type Members

  1. case class Assembler(am: AssemblyManager) extends LazyLogging with Product with Serializable

    Permalink

    Assembler for reach output

    Assembler for reach output

    am

    an AssemblyManager instance Written by: Gus Hahn-Powell. 5/9/2016. Last Modified: Add method to get input features by participants.

  2. class AssemblyManager extends Serializable with LazyLogging

    Permalink

  3. type EER = EntityEventRepresentation

    Permalink
  4. type GroundingID = String

    Permalink
  5. type IDPointer = Int

    Permalink
  6. type MentionState = (Mention, Set[Modification])

    Permalink
  7. class ParticipantFeatureTracker extends LazyLogging

    Permalink
  8. case class PrecedenceRelation(before: EER, after: EER, evidence: Set[Mention], foundBy: String) extends Product with Serializable

    Permalink

    Stores precedence information for two distinct EntityEventRepresentation

    Stores precedence information for two distinct EntityEventRepresentation

    before

    the that precedes PrecedenceRelation.after

    after

    the EntityEventRepresentation that follows PrecedenceRelation.before

    evidence

    the mentions that serve as evidence for this precedence relation

    foundBy

    the name of the Sieve which found this relation

  9. case class RoleWithFeatures(role: String, participant: Mention, parent: Mention, features: Set[PTM]) extends Product with Serializable

    Permalink

    Storage class for an event's participant (+ the input features for the participant)

    Storage class for an event's participant (+ the input features for the participant)

    role

    the participant's role (theme, controlled, etc.)

    participant

    the Mention associated with the participant

    parent

    the Mention (an event) serving as the participant's parent

    features

    SetPTM defining the state of the participant upon event input (pulled from causal predecessors)

  10. type Sieve = (Seq[Mention], AssemblyManager) ⇒ AssemblyManager

    Permalink

Value Members

  1. object Assembler extends LazyLogging with Serializable

    Permalink
  2. object AssemblyManager extends Serializable

    Permalink
  3. object AssemblyShell extends App

    Permalink
  4. object RunAnnotationEval extends App with LazyLogging

    Permalink
  5. object SerializePapersToJSON extends App with LazyLogging

    Permalink

    Serialize each paper in a directory to json

  6. package display

    Permalink
  7. package export

    Permalink
  8. def getMentionState(m: Mention): MentionState

    Permalink

    Get the state of a Mention

  9. package relations

    Permalink
  10. package representations

    Permalink
  11. package server

    Permalink
  12. package sieves

    Permalink

Inherited from AnyRef

Inherited from Any

Ungrouped