1. org
   1. org.clulab
      1. org.clulab.reach
         1. org.clulab.reach.assembly
            1. (object)(case class)Assembler
            2. (object)(class)AssemblyManager
            3. (object)
               AssemblyShell
            4. (class)ParticipantFeatureTracker
            5. (case class)PrecedenceRelation
            6. (case class)RoleWithFeatures
            7. (object)
               RunAnnotationEval
            8. (object)
               SerializePapersToJSON
            1. org.clulab.reach.assembly.display
               1. (class)RowOps
            2. org.clulab.reach.assembly.export
               1. (object)(class)AssemblyExporter
               2. (trait)AssemblyLink
               3. (object)(class)AssemblyRow
               4. (case class)CausalPrecedence
               5. (trait)EERDescription
               6. (case class)Equivalence
               7. (object)
                  ExportFilters
               8. (case class)Subsumption
            3. org.clulab.reach.assembly.relations
               1. (object)
                  ApplyRulesToDocuments
               2. (object)
                  GenerateRBSieveScoreFiles
               3. (object)
                  RunRBSieveAnalysis
               4. (object)
                  SieveEvaluator
               1. org.clulab.reach.assembly.relations.classifier
                  1. (object)(class)AssemblyRelationClassifier
                  2. (object)
                     ClassifyAssemblyRelations
                  3. (object)
                     CrossValidateAssemblyRelationClassifier
                  4. (case class)DatasetStratifiedFold
                  5. (object)
                     Evaluator
                  6. (object)
                     FeatureExtractor
                  7. (case class)LabelPair
                  8. (class)PathFinder
                  9. (case class)Performance
                  10. (object)
                      TrainAssemblyRelationClassifier
               2. org.clulab.reach.assembly.relations.corpus
                  1. (object)
                     AnnotationUtils
                  2. (object)
                     BuildCorpus
                  3. (object)
                     BuildCorpusWithRedundancies
                  4. (object)(case class)Corpus
                  5. (object)
                     CorpusBuilder
                  6. (object)
                     CorpusReader
                  7. (class)EventOps
                  8. (object)(case class)EventPair
                  9. (object)
                     LegacyAnnotationReader
            4. org.clulab.reach.assembly.representations
               1. (class)Activation
               2. (trait)AssemblyModification
               3. (class)Complex
               4. (trait)ComplexEvent
               5. (trait)Entity
               6. (trait)EntityEventRepresentation
               7. (case class)EntityLabel
               8. (trait)Event
               9. (case class)Location
               10. (case class)MutantEntity
               11. (case class)PTM
               12. (class)Regulation
               13. (class)SimpleEntity
               14. (class)SimpleEvent
            5. org.clulab.reach.assembly.server
               1. (class)AkkaServerConfig
               2. (object)
                  AssemblyServer
               3. (object)
                  ServerConfig
               4. (trait)Service
            6. org.clulab.reach.assembly.sieves
               1. (object)(class)AssemblyActions
               2. (object)(trait)AssemblySieve
               3. (object)
                  Constraints
               4. (class)DeduplicationSieves
               5. (class)PrecedenceSieves
               6. (class)SieveMixture
               7. (class)Sieves
               8. (object)
                  SieveUtils