COMPLEX_EVENTS
ReachConstants
CSV
DSVParser
CasedKeyTransforms
ReachKBKeyTransforms
CatalysisUtils
fragmenter
CharInterval
BratUtils
Closeable
brat
ComplexUtils
fragmenter
ComposedCorefFlow
coref
Context
context
ContextCellLine
ReachIMKBMentionLookups
ContextCellLine2
ReachIMKBMentionLookups
ContextCellLine2Filename
ReachKBConstants
ContextCellLineFilename
ReachKBConstants
ContextCellType
ReachIMKBMentionLookups
ContextCellTypeFilename
ReachKBConstants
ContextEngine
context
ContextEngineFactory
context
ContextGrounding
ReachContextKBLister
ContextKBs
ReachContextKBLister
ContextMap
context
ContextOps
json
ContextOrgan
ReachIMKBMentionLookups
ContextOrganFilename
ReachKBConstants
ContextSpecies
ReachIMKBMentionLookups
ContextSpeciesFilename
ReachKBConstants
ContextTissueType
ReachIMKBMentionLookups
ContextTissueTypeFilename
ReachKBConstants
ControlUtils
fragmenter
ConversionUtils
fragmenter
Coref
coref
CorefEventMention
mentions
json
CorefEventMentionOps
json
CorefFlow
coref
CorefMention
mentions
CorefMentionOps
json
CorefRelationMention
mentions
json
CorefRelationMentionOps
json
CorefTextBoundMention
mentions
json
CorefTextBoundMentionOps
json
CorefUtils
coref
canEqual
KBResolution
candidates
Grounding
canonicalKT
ReachKBKeyTransforms
canonicalKey
ReachKBKeyTransforms
canonizeAliases
Alias
catalysis
Fragmenter
catalysisDirection
CatalysisUtils
cellComponentSeq
ReachEntityLookup
cellLineSeq
ReachEntityLookup
cellLocationSearcher
EntityChecker
cellTypeSeq
ReachEntityLookup
cellularLocation
PhysicalEntityUtils
charInterval
IdTracker
chemSearcher
EntityChecker
chemicalSeq
ReachEntityLookup
chunkId
FriesEntry
chunking
ProcessorCoreClient
cleanupEvents
DarpaActions
close
NxmlSearcher
clulab
org
cntr
IncrementingCounter
IncrementingCounter
IncrementingId
coArguments
CorefUtils
cofactors
CatalysisUtils
collapseArguments
CorefUtils
combination
Coref
combineArgs
Coref
commands
ReachShell
compatibleContext
CorefUtils
compatibleGrounding
CorefUtils
compatibleMutants
CorefUtils
completeAST
MentionJSONOps
complexAssemblies
Fragmenter
components
ComplexUtils
config
PaperReader
ReachShell
ReadPapers
ReachEntityLookup
ReachGrounder
consecutivePreps
DarpaActions
contains
KBLookupSet
containsHumanNsId
Speciated
containsHumanSpecies
Speciated
context
Rules
reach
Context
contextCellLine2KBML
ReachIMKBMentionLookups
contextCellLineKBML
ReachIMKBMentionLookups
contextCellTypeKBML
ReachIMKBMentionLookups
contextConfig
PaperReader
ReachShell
contextEngineParams
PaperReader
ReachShell
contextEngineType
PaperReader
ReachShell
contextMatching
ContextEngine
contextOrganKBML
ReachIMKBMentionLookups
contextRelationsFile
RuleReader
contextRules
ReachSystem
contextSpeciesKBML
ReachIMKBMentionLookups
contextTissueTypeKBML
ReachIMKBMentionLookups
controlType
ControlUtils
controlled
ControlUtils
controlledArgs
MentionOps
controlledOf
ProcessUtils
controller
ControlUtils
controllerArgs
MentionOps
controls
Fragmenter
conversionDirection
ConversionUtils
conversionLabels
ConversionUtils
Labeler
conversions
Fragmenter
convertEventToEntity
DarpaActions
copyAttachments
BioMention
CorefMention
copyGroundingFrom
Grounding
coref
clulab
corefDistinct
CorefUtils
coserver
reach
countDocsContaining
NxmlSearcher
countSemanticNegatives
DarpaActions
covalentBindingFeatures
PhysicalEntityUtils
createContextEngineParams
context
ctxType
ContextGrounding
current
IncrementingCounter
IncrementingCounter
currentId
IncrementingId