MEK
NxmlSearcher
MODIFICATION_EVENTS
ReachConstants
MODIFIER_LABELS
DarpaActions
MentionCacheValue
utils
MentionFilter
darpa
MentionJSONOps
json
MentionManager
utils
MentionOps
mentions
MentionOrdering
MentionManager
ModelGendCellLocation
ReachIMKBMentionLookups
ModelGendChemical
ReachIMKBMentionLookups
ModelGendProteinAndFamily
ReachIMKBMentionLookups
Modification
mentions
ModificationOps
json
Modifications
mentions
ModificationsOps
json
MultiValueAttribute
brat
Mutant
mentions
main
DocListOverlap
NxmlIndexer
NxmlSearcher
make
AdHocIMKBFactory
TsvIMKBFactory
makeFileInKBDir
ReachKBUtils
makeFileInUserDir
ReachKBUtils
makeNamespaceId
ReachKBUtils
makePathInKBDir
ReachKBUtils
makePathInUserDir
ReachKBUtils
matches
Modification
memoryKB
IMKBLookup
mention
MentionCacheValue
mentionMgr
ReachGrounder
mentionToJSON
json
mentionToStrings
MentionManager
mentions
reach
mergeEventMentions
MentionManager
mergedEvents
MentionManager
metaInfo
IMKBLookup
InMemoryKB
KBResolution
mkActivation
DarpaActions
mkBinding
DarpaActions
mkBindingsFromPairs
DarpaActions
mkBioMention
DarpaActions
mkDoc
ReachSystem
mkDocument
ProcessorCoreClient
mkDocumentFromSentences
ProcessorCoreClient
mkDocumentFromTokens
ProcessorCoreClient
mkEntities
DarpaActions
mkFriesEntry
FriesEntry
mkMentions
InstanceFinder
mkNERMentions
DarpaActions
mkNaryBinding
DarpaActions
mkRegulation
DarpaActions
mkRules
RuleReader
mkTokenConstraint
PathFinder
mkTokenConstraints
PathFinder
mkUbiquitination
DarpaActions
model
Fragmenter
modificationEngine
ReachSystem
modificationFeatures
PhysicalEntityUtils
modificationRules
ReachSystem
modifications
Rules
Modifications
modificationsMasterFile
RuleReader
modulations
Fragmenter
molecularInteractions
Fragmenter
multiLabel
InstanceFinder
mutantProteinMatch
DarpaLinks
mutants
Modifications
mutationsToMentions
ReachSystem