SEMANTIC_NEGATIVE_PATTERN
DarpaActions
SIMPLE_EVENTS
ReachConstants
SimplePhysicalEntityUtils
fragmenter
Speciated
grounding
SpeciesNameSet
Speciated
StaticBioProcess
ReachIMKBMentionLookups
StaticBioProcessFilename
ReachKBConstants
StaticCellLocation
ReachIMKBMentionLookups
StaticCellLocation2
ReachIMKBMentionLookups
StaticCellLocation2Filename
ReachKBConstants
StaticCellLocationFilename
ReachKBConstants
StaticChemical
ReachIMKBMentionLookups
StaticChemicalFilename
ReachKBConstants
StaticDrug
ReachIMKBMentionLookups
StaticDrugFilename
ReachKBConstants
StaticMetaboliteFilename
ReachKBConstants
StaticProtein
ReachIMKBMentionLookups
StaticProteinComplex
ReachIMKBMentionLookups
StaticProteinComplexFilename
ReachKBConstants
StaticProteinFamily
ReachIMKBMentionLookups
StaticProteinFamily0
ReachIMKBMentionLookups
StaticProteinFamily0Filename
ReachKBConstants
StaticProteinFamily2
ReachIMKBMentionLookups
StaticProteinFamily2Filename
ReachKBConstants
StaticProteinFamilyFilename
ReachKBConstants
StaticProteinFilename
ReachKBConstants
StringSetOps
json
sameEntityID
DarpaActions
saveDocs
NxmlSearcher
saveIds
NxmlSearcher
saveNxml
NxmlSearcher
search
NxmlSearcher
searchByField
NxmlSearcher
searchByIds
NxmlSearcher
searchId
NxmlSearcher
searcher
NxmlSearcher
sectionId
FriesEntry
sectionName
FriesEntry
selectASpecies
ReachKBUtils
selectByNotSpecies
ReachKBUtils
selectBySpecies
ReachKBUtils
selectHuman
ReachKBUtils
selectNoSpecies
ReachKBUtils
selectNotASpecies
ReachKBUtils
selectNotHuman
ReachKBUtils
sentenceEndCharacterOffset
MentionManager
sentenceStartCharacterOffset
MentionManager
seqNum
MentionCacheValue
serialization
mentions
setPropertyName
TypesafeConfigPropertyDefiner
sharesGroundingWith
Grounding
shortString
BioEventMention BioRelationMention BioTextBoundMention CorefEventMention CorefRelationMention CorefTextBoundMention
sieves
Anaphoric
simpleEventMatch
DarpaLinks
simpleMembers
ComplexUtils
site
EventSite PTM
siteArgs
MentionOps
siteSeq
ReachEntityLookup
siteSniffer
DarpaActions
size
KBLookupSet
sortMentionsToStrings
MentionManager
sortedContextEntries
ContextEngine
sourceArgs
MentionOps
sourceFromResource
ReachKBUtils
spans
TextBound
species
KBResolution ContextGrounding
speciesForNsId
IMKBLookup InMemoryKB
speciesSeq
ReachEntityLookup
splitSimpleEvents
DarpaActions
standardName
NamedUtils
staticBioProcessKBML
ReachIMKBMentionLookups
staticCellLocation2KBLookup
ReachIMKBLookups
staticCellLocation2KBML
ReachIMKBMentionLookups
staticCellLocationKBLookup
ReachIMKBLookups
staticCellLocationKBML
ReachIMKBMentionLookups
staticChemicalKBLookup
ReachIMKBLookups
staticChemicalKBML
ReachIMKBMentionLookups
staticDrugKBLookup
ReachIMKBLookups
staticDrugKBML
ReachIMKBMentionLookups
staticMetaboliteKBLookup
ReachIMKBLookups
staticMetaboliteKBML
ReachIMKBMentionLookups
staticProteinComplexKBLookup
ReachIMKBLookups
staticProteinComplexKBML
ReachIMKBMentionLookups
staticProteinFamily0KBLookup
ReachIMKBLookups
staticProteinFamily0KBML
ReachIMKBMentionLookups
staticProteinFamily2KBLookup
ReachIMKBLookups
staticProteinFamily2KBML
ReachIMKBMentionLookups
staticProteinFamilyKBLookup
ReachIMKBLookups
staticProteinFamilyKBML
ReachIMKBMentionLookups
staticProteinKBLookup
ReachIMKBLookups
staticProteinKBML
ReachIMKBMentionLookups
storeEventSite
DarpaActions
storeMutants
DarpaActions
storePTM
DarpaActions
strictHeadMatch
DarpaLinks
string
BioEventMention BioRelationMention BioTextBoundMention CorefEventMention CorefRelationMention CorefTextBoundMention
stripAllKeysSuffixes
ReachKBKeyTransforms
stripAllSuffixes
KBKeyTransforms
stripAllSuffixesKT
KBKeyTransforms
stripFamilyPostAttributivesKT
ReachKBKeyTransforms
stripGeneNameAffixesKT
ReachKBKeyTransforms
stripMutantProteinKT
ReachKBKeyTransforms
stripOrganPostAttributivesKT
ReachKBKeyTransforms
stripPTMPrefixesKT
ReachKBKeyTransforms
stripProteinDomainKT
ReachKBKeyTransforms
stripProteinPostAttributivesKT
ReachKBKeyTransforms
stripSuffixByPattern
ReachKBKeyTransforms
subgraph
DependencyUtils
switchLabel
DarpaActions
syntaxStandoff
Brat