PAI1
NxmlSearcher
PANCREAS
NxmlSearcher
PHASE3_DRUG
NxmlSearcher
PMCMetaData
indexer
PTM
mentions
PTMPrefixPat
ReachKBKeyTransforms
PaddingContext
context
PaperId
PaperReader
PaperReader
reach
PathFinder
utils
PathwayUtils
fragmenter
PhosphorMutationPat
ReachKBKeyTransforms
PhysicalEntityUtils
fragmenter
Polarity
polarity
PolarityClassifier
ml
PolarityDatasetPreprocessor
data
PolarityEngine
polarity
Policy1
Engine
Policy2
Engine
Policy3
Engine
Policy4
Engine
PositivePolarity
polarity
Preprocess
utils
ProcessUtils
fragmenter
ProteinAuxKeyTransforms
ReachKBKeyTransforms
ProteinDomainShortNames
KBLookupSet
ProteinDomainShortNamesFilename
ReachKBConstants
ProteinKinaseIds
KBLookupSet
ProteinKinasesFilename
ReachKBConstants
ProteinPostAttributivePat
ReachKBKeyTransforms
p_W
DeepLearningPolarityClassifier
p_b
DeepLearningPolarityClassifier
papersDir
ReadPapers
parseAnnotation
Brat
parseArguments
PolarityDatasetPreprocessor
participantOf
EntityUtils
particleModifiers
LinguisticPolarityEngine
pathsAST
json
pathwayComponentOf
ProcessUtils
pathwayComponents
PathwayUtils
pc
DeepLearningPolarityClassifier
pmcId
PMCMetaData
polarity
clulab
polarityRule
ManualCheckModel
polarityRule2
ManualCheckModel
polarityRule_regulation_20191009
ManualCheckModel
polarity_regulation_20191009
ManualCheckModel
postKTs
KBKeyTransformsGroup
predict
DeepLearningPolarityClassifier
PolarityClassifier
predictManual
DeepLearningPolarityClassifier
preferEventControllers
DarpaActions
preferEvents
MentionFilter
preferredLabel
MentionManager
preproc
PaperReader
preprocessText
Preprocess
prettify
json
printCommands
ReachShell
procAnnotator
PaperReader
ReachShell
ReachSystem
pronominalMatch
DarpaLinks
proteinBetween
DarpaActions
proteinSearcher
EntityChecker
proteinSeq
ReachEntityLookup
pruneMentions
MentionFilter
publications
XReferrableUtils