A B C D E F G H I J K L M N O P Q R S T U V W X Y

A

about() - Method in class org.scijava.app.AbstractApp

about() - Method in interface org.scijava.app.App

Displays information about the application.

about() - Method in interface org.scijava.platform.AppEventService

Deprecated.

Use App.about() instead.

about() - Method in class org.scijava.platform.DefaultAppEventService

Deprecated.

AbstractApp - Class in org.scijava.app

Abstract superclass of App implementations.

AbstractApp() - Constructor for class org.scijava.app.AbstractApp

AbstractAutoCompleter - Class in org.scijava.script

Abstract base class for AutoCompleter implementations.

AbstractAutoCompleter(ScriptLanguage) - Constructor for class org.scijava.script.AbstractAutoCompleter

AbstractBasicDetails - Class in org.scijava

Abstract superclass of BasicDetails implementations.

AbstractBasicDetails() - Constructor for class org.scijava.AbstractBasicDetails

AbstractCodeRunner - Class in org.scijava.run

Abstract superclass of CodeRunner implementations.

AbstractCodeRunner() - Constructor for class org.scijava.run.AbstractCodeRunner

AbstractConsoleArgument - Class in org.scijava.console

Abstract superclass of ConsoleArgument implementations.

AbstractConsoleArgument() - Constructor for class org.scijava.console.AbstractConsoleArgument

AbstractConsoleArgument(String...) - Constructor for class org.scijava.console.AbstractConsoleArgument

AbstractConsoleArgument(int, String...) - Constructor for class org.scijava.console.AbstractConsoleArgument

AbstractConsolePane<C> - Class in org.scijava.ui.console

Abstract base class of ConsolePane implementations.

AbstractConsolePane(Context) - Constructor for class org.scijava.ui.console.AbstractConsolePane

AbstractContextual - Class in org.scijava

Abstract base class for Contextual objects.

AbstractContextual() - Constructor for class org.scijava.AbstractContextual

AbstractConverter<I,O> - Class in org.scijava.convert

Abstract superclass for Converter plugins.

AbstractConverter() - Constructor for class org.scijava.convert.AbstractConverter

AbstractConvertService - Class in org.scijava.convert

Abstract superclass for ConvertService implementations.

AbstractConvertService() - Constructor for class org.scijava.convert.AbstractConvertService

AbstractDataHandle<L extends Location> - Class in org.scijava.io.handle

Abstract base class for DataHandle plugins.

AbstractDataHandle() - Constructor for class org.scijava.io.handle.AbstractDataHandle

AbstractDisplay<T> - Class in org.scijava.display

Abstract superclass of Display implementations.

AbstractDisplay(Class<T>) - Constructor for class org.scijava.display.AbstractDisplay

AbstractDisplayViewer<T> - Class in org.scijava.ui.viewer

The AbstractDisplayViewer provides some basic generic implementations for a DisplayViewer such as storing and providing the display, window and panel for a DisplayViewer.

AbstractDisplayViewer() - Constructor for class org.scijava.ui.viewer.AbstractDisplayViewer

AbstractDragAndDropData - Class in org.scijava.ui.dnd

Abstract superclass for DragAndDropData implementations.

AbstractDragAndDropData() - Constructor for class org.scijava.ui.dnd.AbstractDragAndDropData

AbstractDragAndDropHandler<D> - Class in org.scijava.ui.dnd

Abstract superclass for DragAndDropHandlers.

AbstractDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.AbstractDragAndDropHandler

AbstractGateway - Class in org.scijava

Abstract superclass for Gateway implementations.

AbstractGateway() - Constructor for class org.scijava.AbstractGateway

AbstractGateway(String, Context) - Constructor for class org.scijava.AbstractGateway

AbstractHandlerPlugin<D> - Class in org.scijava.plugin

Abstract base class for HandlerPlugin implementations.

AbstractHandlerPlugin() - Constructor for class org.scijava.plugin.AbstractHandlerPlugin

AbstractHandlerService<DT,PT extends HandlerPlugin<DT>> - Class in org.scijava.plugin

Abstract base class for HandlerServices.

AbstractHandlerService() - Constructor for class org.scijava.plugin.AbstractHandlerService

AbstractHigherOrderHandle<L extends Location> - Class in org.scijava.io.handle

Abstract superclass for DataHandles that operate over other DataHandles.

AbstractHigherOrderHandle(DataHandle<L>) - Constructor for class org.scijava.io.handle.AbstractHigherOrderHandle

AbstractIndexWriter - Class in org.scijava.annotations

Writes annotations as JSON-formatted files.

AbstractIndexWriter() - Constructor for class org.scijava.annotations.AbstractIndexWriter

AbstractIndexWriter.StreamFactory - Interface in org.scijava.annotations

AbstractInputHarvester<P,W> - Class in org.scijava.widget

Abstract superclass for InputHarvesters.

AbstractInputHarvester() - Constructor for class org.scijava.widget.AbstractInputHarvester

AbstractInputHarvesterPlugin<P,W> - Class in org.scijava.ui

AbstractInputHarvesterPlugin is an InputHarvester that implements the PreprocessorPlugin interface.

AbstractInputHarvesterPlugin() - Constructor for class org.scijava.ui.AbstractInputHarvesterPlugin

AbstractInputPanel<P,W> - Class in org.scijava.widget

Abstract superclass of UI-specific InputPanel implementations.

AbstractInputPanel() - Constructor for class org.scijava.widget.AbstractInputPanel

AbstractInputWidget<T,W> - Class in org.scijava.widget

Base class for input widgets.

AbstractInputWidget() - Constructor for class org.scijava.widget.AbstractInputWidget

AbstractIOPlugin<D> - Class in org.scijava.io

Abstract base class for IOPlugins.

AbstractIOPlugin() - Constructor for class org.scijava.io.AbstractIOPlugin

AbstractLocation - Class in org.scijava.io.location

Abstract base class for Location implementations.

AbstractLocation() - Constructor for class org.scijava.io.location.AbstractLocation

AbstractLocationResolver - Class in org.scijava.io.location

Abstract super class for LocationResolver plugins.

AbstractLocationResolver(String...) - Constructor for class org.scijava.io.location.AbstractLocationResolver

AbstractLogService - Class in org.scijava.log

Base class for LogService implementations.

AbstractLogService() - Constructor for class org.scijava.log.AbstractLogService

AbstractLogService(Properties) - Constructor for class org.scijava.log.AbstractLogService

AbstractMenuCreator<T,M> - Class in org.scijava.menu

Abstract helper class for generating a menu structure.

AbstractMenuCreator() - Constructor for class org.scijava.menu.AbstractMenuCreator

AbstractModule - Class in org.scijava.module

Abstract superclass of Module implementations.

AbstractModule() - Constructor for class org.scijava.module.AbstractModule

AbstractModuleInfo - Class in org.scijava.module

Abstract superclass of ModuleInfo implementation.

AbstractModuleInfo() - Constructor for class org.scijava.module.AbstractModuleInfo

AbstractModuleItem<T> - Class in org.scijava.module

Abstract superclass of ModuleItem implementations.

AbstractModuleItem(ModuleInfo) - Constructor for class org.scijava.module.AbstractModuleItem

AbstractPlatform - Class in org.scijava.platform

Abstract superclass of platform implementations.

AbstractPlatform() - Constructor for class org.scijava.platform.AbstractPlatform

AbstractPostprocessorPlugin - Class in org.scijava.module.process

Abstract base class for plugin postprocessors.

AbstractPostprocessorPlugin() - Constructor for class org.scijava.module.process.AbstractPostprocessorPlugin

AbstractPrefService - Class in org.scijava.prefs

Abstract PrefService implementation.

AbstractPrefService() - Constructor for class org.scijava.prefs.AbstractPrefService

AbstractPreprocessorPlugin - Class in org.scijava.module.process

Abstract base class for plugin preprocessors.

AbstractPreprocessorPlugin() - Constructor for class org.scijava.module.process.AbstractPreprocessorPlugin

AbstractPrimitiveArray<ArrayType,BaseType> - Class in org.scijava.util

Abstract base class for primitive-type extensible arrays.

AbstractPrimitiveArray(Class<BaseType>) - Constructor for class org.scijava.util.AbstractPrimitiveArray

Constructs an extensible array of primitive type elements, backed by a fixed-size array.

AbstractPrimitiveArray(Class<BaseType>, int) - Constructor for class org.scijava.util.AbstractPrimitiveArray

Constructs an extensible array of primitive type elements, backed by a fixed-size array.

AbstractPrimitiveArray(Class<BaseType>, ArrayType) - Constructor for class org.scijava.util.AbstractPrimitiveArray

Constructs an extensible array of primitive type elements, backed by the given fixed-size array.

AbstractPTService<PT extends SciJavaPlugin> - Class in org.scijava.plugin

Abstract base class for PTServices.

AbstractPTService() - Constructor for class org.scijava.plugin.AbstractPTService

AbstractRemoteLocation - Class in org.scijava.io.location

Abstract base class for RemoteLocation implementations.

AbstractRemoteLocation() - Constructor for class org.scijava.io.location.AbstractRemoteLocation

AbstractRichPlugin - Class in org.scijava.plugin

Abstract base class for RichPlugin implementations.

AbstractRichPlugin() - Constructor for class org.scijava.plugin.AbstractRichPlugin

AbstractScriptContext - Class in org.scijava.script

A minimal implementation of ScriptContext for use in the AbstractScriptEngine.

AbstractScriptContext() - Constructor for class org.scijava.script.AbstractScriptContext

AbstractScriptEngine - Class in org.scijava.script

This class implements dummy versions for ScriptEngine's methods that are not needed by the SciJava scripting framework.

AbstractScriptEngine() - Constructor for class org.scijava.script.AbstractScriptEngine

AbstractScriptHeader - Class in org.scijava.script

Abstract superclass for ScriptHeader implementations.

AbstractScriptHeader() - Constructor for class org.scijava.script.AbstractScriptHeader

AbstractScriptLanguage - Class in org.scijava.script

Abstract superclass for ScriptLanguage implementations.

AbstractScriptLanguage() - Constructor for class org.scijava.script.AbstractScriptLanguage

AbstractService - Class in org.scijava.service

Abstract superclass of Service implementations.

AbstractService() - Constructor for class org.scijava.service.AbstractService

AbstractSingleInputPreprocessor - Class in org.scijava.module.process

Abstract superclass for PreprocessorPlugin implementations that populate singleton inputs.

AbstractSingleInputPreprocessor() - Constructor for class org.scijava.module.process.AbstractSingleInputPreprocessor

AbstractSingletonService<PT extends SingletonPlugin> - Class in org.scijava.plugin

Abstract base class for SingletonServices.

AbstractSingletonService() - Constructor for class org.scijava.plugin.AbstractSingletonService

AbstractTextDisplayViewer - Class in org.scijava.ui.viewer.text

Implements the UI-independent elements of a text viewer.

AbstractTextDisplayViewer() - Constructor for class org.scijava.ui.viewer.text.AbstractTextDisplayViewer

AbstractTextFormat - Class in org.scijava.text

Abstract superclass of TextFormat implementations.

AbstractTextFormat() - Constructor for class org.scijava.text.AbstractTextFormat

AbstractTool - Class in org.scijava.tool

Abstract base class for Tool implementations.

AbstractTool() - Constructor for class org.scijava.tool.AbstractTool

AbstractTypedPlugin<D> - Class in org.scijava.plugin

Abstract base class for TypedPlugins.

AbstractTypedPlugin() - Constructor for class org.scijava.plugin.AbstractTypedPlugin

AbstractTypedService<DT,PT extends TypedPlugin<DT>> - Class in org.scijava.plugin

Abstract base class for TypedServices.

AbstractTypedService() - Constructor for class org.scijava.plugin.AbstractTypedService

AbstractUIDetails - Class in org.scijava

Abstract superclass of UIDetails implementations.

AbstractUIDetails() - Constructor for class org.scijava.AbstractUIDetails

AbstractUIInputWidget<T,W> - Class in org.scijava.ui

Abstract superclass of InputWidget implementations that belong to a specific UI.

AbstractUIInputWidget() - Constructor for class org.scijava.ui.AbstractUIInputWidget

AbstractUserInterface - Class in org.scijava.ui

Abstract superclass for UserInterface implementations.

AbstractUserInterface() - Constructor for class org.scijava.ui.AbstractUserInterface

AbstractWrapperPlugin<D> - Class in org.scijava.plugin

Abstract base class for WrapperPlugins.

AbstractWrapperPlugin() - Constructor for class org.scijava.plugin.AbstractWrapperPlugin

AbstractWrapperService<DT,PT extends WrapperPlugin<DT>> - Class in org.scijava.plugin

Abstract base class for WrapperServices.

AbstractWrapperService() - Constructor for class org.scijava.plugin.AbstractWrapperService

Accelerator - Class in org.scijava.input

A keyboard shortcut, consisting of a KeyCode plus InputModifiers.

Accelerator(KeyCode, InputModifiers) - Constructor for class org.scijava.input.Accelerator

acquireDrawer(Tool) - Method in interface org.scijava.tool.IconService

activate() - Method in interface org.scijava.tool.Tool

Informs the tool that it is now active.

activate() - Method in interface org.scijava.ui.ApplicationFrame

Activate the application frame, bringing it to the front.

ActiveDisplayPreprocessor - Class in org.scijava.display

Assigns the active Display when there is one single unresolved Display parameter.

ActiveDisplayPreprocessor() - Constructor for class org.scijava.display.ActiveDisplayPreprocessor

adapt(Object) - Method in class org.scijava.annotations.AbstractIndexWriter

adapt(A) - Method in class org.scijava.annotations.AbstractIndexWriter

AdaptedScriptEngine - Class in org.scijava.script

Abstract superclass for ScriptEngine implementations which adapt an existing ScriptEngine.

AdaptedScriptEngine(ScriptEngine) - Constructor for class org.scijava.script.AdaptedScriptEngine

AdaptedScriptLanguage - Class in org.scijava.script

Abstract superclass for ScriptLanguage implementations which adapt an existing ScriptEngineFactory.

AdaptedScriptLanguage(ScriptEngineFactory) - Constructor for class org.scijava.script.AdaptedScriptLanguage

Creates a new AdaptedScriptLanguage wrapping the given ScriptEngineFactory.

AdaptedScriptLanguage(String) - Constructor for class org.scijava.script.AdaptedScriptLanguage

Creates a new AdaptedScriptLanguage wrapping the ScriptEngineFactory with the given name.

add(Map<String, Object>, String, String) - Method in class org.scijava.annotations.AbstractIndexWriter

add(A, String) - Method in class org.scijava.annotations.DirectoryIndexer

add(int, T) - Method in class org.scijava.display.AbstractDisplay

add(T) - Method in class org.scijava.display.AbstractDisplay

add(String) - Method in class org.scijava.io.DefaultRecentFileService

add(String) - Method in interface org.scijava.io.RecentFileService

Adds or refreshes a path on the list of recent files.

add(ModuleInfo) - Method in class org.scijava.menu.ShadowMenu

Adds the given module to the menu structure.

add(E) - Method in class org.scijava.object.ObjectIndex

add(E, boolean) - Method in class org.scijava.object.ObjectIndex

Adds the object to all compatible type lists.

add(E, Class<?>, boolean) - Method in class org.scijava.object.ObjectIndex

Adds an object to type lists beneath the given type hierarchy.

add(ScriptEngineFactory, boolean) - Method in class org.scijava.script.ScriptLanguageIndex

add(ScriptLanguage) - Method in class org.scijava.script.ScriptLanguageIndex

add(int, BaseType) - Method in class org.scijava.util.AbstractPrimitiveArray

add(int, Boolean) - Method in class org.scijava.util.BoolArray

add(int, Byte) - Method in class org.scijava.util.ByteArray

add(int, Character) - Method in class org.scijava.util.CharArray

add(int, Double) - Method in class org.scijava.util.DoubleArray

add(int, Float) - Method in class org.scijava.util.FloatArray

add(int, Integer) - Method in class org.scijava.util.IntArray

add(T) - Method in class org.scijava.util.LastRecentlyUsed

Add a new newest entry.

add(int, Long) - Method in class org.scijava.util.LongArray

add(int, E) - Method in class org.scijava.util.ObjectArray

add(int, Short) - Method in class org.scijava.util.ShortArray

addAlias(String, Class<?>) - Method in class org.scijava.script.DefaultScriptService

addAlias(Class<?>) - Method in interface org.scijava.script.ScriptService

TODO

addAlias(String, Class<?>) - Method in interface org.scijava.script.ScriptService

TODO

addAll(int, Collection<? extends T>) - Method in class org.scijava.display.AbstractDisplay

addAll(Collection<? extends T>) - Method in class org.scijava.display.AbstractDisplay

addAll(Collection<? extends ModuleInfo>) - Method in class org.scijava.menu.ShadowMenu

Adds the given modules to the menu structure.

addAll(Collection<? extends E>) - Method in class org.scijava.object.ObjectIndex

addAll(Collection<? extends E>) - Method in class org.scijava.object.SortedObjectIndex

addAll(int, Collection<? extends Boolean>) - Method in class org.scijava.util.BoolArray

addAll(int, Collection<? extends Byte>) - Method in class org.scijava.util.ByteArray

addAll(int, Collection<? extends Character>) - Method in class org.scijava.util.CharArray

addAll(int, Collection<? extends Double>) - Method in class org.scijava.util.DoubleArray

addAll(int, Collection<? extends Float>) - Method in class org.scijava.util.FloatArray

addAll(int, Collection<? extends Integer>) - Method in class org.scijava.util.IntArray

addAll(Collection<? extends T>) - Method in class org.scijava.util.LastRecentlyUsed

addAll(int, Collection<? extends Long>) - Method in class org.scijava.util.LongArray

addAll(int, Collection<? extends E>) - Method in class org.scijava.util.ObjectArray

addAll(int, Collection<? extends Short>) - Method in class org.scijava.util.ShortArray

addArgDelimiter() - Method in interface org.scijava.script.CodeGenerator

Deprecated.

Adds delimiter character between arguments (typically a ',').

addArgDelimiter() - Method in class org.scijava.script.CodeGeneratorJava

Deprecated.

addArgument(ParameterObject) - Method in interface org.scijava.script.CodeGenerator

Deprecated.

addArgument(ParameterObject) - Method in class org.scijava.script.CodeGeneratorJava

Deprecated.

addChildren(List<? extends TreeNode<?>>) - Method in interface org.scijava.util.TreeNode

Adds the given list of children to this node.

addDisplayViewer(DisplayViewer<?>) - Method in class org.scijava.ui.DefaultUIService

addDisplayViewer(DisplayViewer<?>) - Method in interface org.scijava.ui.UIService

Registers the given viewer with the service.

addInput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo

addInput(String, Class<T>) - Method in interface org.scijava.module.MutableModule

Adds an input to the list.

addInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule

Adds an input to the list.

addInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo

Adds an input to the list.

addLater(LazyObjects<? extends E>) - Method in class org.scijava.object.ObjectIndex

Registers objects which will be created lazily as needed.

addLeafToMenu(ShadowMenu, M) - Method in class org.scijava.menu.AbstractMenuCreator

addLeafToTop(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator

addListener(EventHistoryListener) - Method in class org.scijava.event.DefaultEventHistory

addListener(EventHistoryListener) - Method in interface org.scijava.event.EventHistory

Adds an event history listener.

addLogListener(LogListener) - Method in class org.scijava.log.AbstractLogService

addLogListener(LogListener) - Method in class org.scijava.log.DefaultLogger

addLogListener(LogListener) - Method in interface org.scijava.log.Logger

Adds an item to the list of registered listeners.

addMain(String, String...) - Method in class org.scijava.main.DefaultMainService

addMain(String, String...) - Method in interface org.scijava.main.MainService

Registers a main class to be executed by MainService.execMains().

addModule(ModuleInfo) - Method in class org.scijava.module.DefaultModuleService

addModule(ModuleInfo) - Method in interface org.scijava.module.ModuleService

Manually registers a module with the module service.

addModuleCalled(String) - Method in interface org.scijava.script.CodeGenerator

Deprecated.

addModuleCalled(String) - Method in class org.scijava.script.CodeGeneratorJava

Deprecated.

addModules(Collection<? extends ModuleInfo>) - Method in class org.scijava.module.DefaultModuleService

addModules(Collection<? extends ModuleInfo>) - Method in interface org.scijava.module.ModuleService

Manually registers a list of modules with the module service.

addNonLeafToMenu(ShadowMenu, M) - Method in class org.scijava.menu.AbstractMenuCreator

addNonLeafToTop(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator

addObject(Object) - Method in class org.scijava.object.DefaultObjectService

addObject(Object) - Method in interface org.scijava.object.ObjectService

Registers an object with the object service.

addOperation(Runnable) - Method in class org.scijava.startup.DefaultStartupService

addOperation(Runnable) - Method in interface org.scijava.startup.StartupService

Adds an operation that will run as soon as the application starts up.

addOutput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo

addOutput(String, Class<T>) - Method in interface org.scijava.module.MutableModule

Adds an output to the list.

addOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule

Adds an output to the list.

addOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo

Adds an output to the list.

addOutputListener(OutputListener) - Method in interface org.scijava.console.ConsoleService

Adds a listener for output sent to stdout or stderr.

addOutputListener(OutputListener) - Method in class org.scijava.console.DefaultConsoleService

addOutputStream(OutputStream) - Method in class org.scijava.console.MultiOutputStream

Adds an output stream to those receiving this stream's output.

addParameter(String, Class<?>, Object) - Method in class org.scijava.script.InvocationObject

Deprecated.

addPlugin(PluginInfo<?>) - Method in class org.scijava.plugin.DefaultPluginService

addPlugin(PluginInfo<?>) - Method in interface org.scijava.plugin.PluginService

Manually registers a plugin with the plugin service.

addPlugins(Collection<T>) - Method in class org.scijava.plugin.DefaultPluginService

addPlugins(Collection<T>) - Method in interface org.scijava.plugin.PluginService

Manually registers plugins with the plugin service.

addPropertyChangeListener(PropertyChangeListener) - Method in interface org.scijava.ui.Arrangeable

addScriptDirectory(File) - Method in class org.scijava.script.DefaultScriptService

addScriptDirectory(File, MenuPath) - Method in class org.scijava.script.DefaultScriptService

addScriptDirectory(File) - Method in interface org.scijava.script.ScriptService

Adds a base directory to scan for scripts.

addScriptDirectory(File, MenuPath) - Method in interface org.scijava.script.ScriptService

Adds a base directory to scan for scripts, placing discovered scripts beneath the given menu path prefix.

addSeparatorToMenu(M) - Method in class org.scijava.menu.AbstractMenuCreator

addSeparatorToTop(T) - Method in class org.scijava.menu.AbstractMenuCreator

addTiming(Object) - Method in class org.scijava.util.Timing

addTiming(long, Object) - Method in class org.scijava.util.Timing

addToEnd(T) - Method in class org.scijava.util.LastRecentlyUsed

Add a new oldest entry.

addToList(E, List<E>, boolean) - Method in class org.scijava.object.ObjectIndex

addToList(E, List<E>, boolean) - Method in class org.scijava.object.SortedObjectIndex

addUI(UserInterface) - Method in class org.scijava.ui.DefaultUIService

addUI(String, UserInterface) - Method in class org.scijava.ui.DefaultUIService

addUI(UserInterface) - Method in interface org.scijava.ui.UIService

Adds the given UI to those managed by the service.

addUI(String, UserInterface) - Method in interface org.scijava.ui.UIService

Adds the given UI to those managed by the service.

addValue(boolean) - Method in class org.scijava.util.BoolArray

addValue(int, boolean) - Method in class org.scijava.util.BoolArray

addValue(byte) - Method in class org.scijava.util.ByteArray

addValue(int, byte) - Method in class org.scijava.util.ByteArray

addValue(char) - Method in class org.scijava.util.CharArray

addValue(int, char) - Method in class org.scijava.util.CharArray

addValue(double) - Method in class org.scijava.util.DoubleArray

addValue(int, double) - Method in class org.scijava.util.DoubleArray

addValue(float) - Method in class org.scijava.util.FloatArray

addValue(int, float) - Method in class org.scijava.util.FloatArray

addValue(int) - Method in class org.scijava.util.IntArray

addValue(int, int) - Method in class org.scijava.util.IntArray

addValue(long) - Method in class org.scijava.util.LongArray

addValue(int, long) - Method in class org.scijava.util.LongArray

addValue(E) - Method in class org.scijava.util.ObjectArray

addValue(int, E) - Method in class org.scijava.util.ObjectArray

addValue(short) - Method in class org.scijava.util.ShortArray

addValue(int, short) - Method in class org.scijava.util.ShortArray

addWidget(InputWidget<?, W>) - Method in class org.scijava.widget.AbstractInputPanel

addWidget(InputWidget<?, W>) - Method in interface org.scijava.widget.InputPanel

Adds a widget to the panel.

ALICEBLUE - Static variable in class org.scijava.util.Colors

allocate(FileChannel, FileChannel.MapMode, long, int) - Method in class org.scijava.io.nio.DefaultNIOService

allocate(FileChannel, FileChannel.MapMode, long, int) - Method in interface org.scijava.io.nio.NIOService

Allocates or maps the desired file data into memory.

allocate(long...) - Static method in class org.scijava.util.ArrayUtils

Allocates a 1-dimensional byte array matching the product of the given sizes.

alwaysLog(int, Object, Throwable) - Method in class org.scijava.log.AbstractLogService

alwaysLog(int, Object, Throwable) - Method in class org.scijava.log.DefaultLogger

alwaysLog(int, Object, Throwable) - Method in interface org.scijava.log.Logger

Logs a message with an exception.

ANALYZE_LABEL - Static variable in class org.scijava.menu.MenuConstants

ANALYZE_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants

ANALYZE_WEIGHT - Static variable in class org.scijava.menu.MenuConstants

annotation() - Method in class org.scijava.annotations.IndexItem

Obtains the annotation values.

AnnotationCombiner - Class in org.scijava.annotations

Combines annotation indexes from all JAR files on the classpath.

AnnotationCombiner() - Constructor for class org.scijava.annotations.AnnotationCombiner

AnnotationProcessor - Class in org.scijava.annotations

The annotation processor for use with Java 8 and earlier.

AnnotationProcessor() - Constructor for class org.scijava.annotations.AnnotationProcessor

ANTIQUEWHITE - Static variable in class org.scijava.util.Colors

app() - Method in class org.scijava.AbstractGateway

App - Interface in org.scijava.app

Metadata about a SciJava-based application, used by the AppService.

app() - Method in interface org.scijava.Gateway

Gets this application context's AppService.

AppAboutEvent - Class in org.scijava.platform.event

An event sent when the application is asked to open its about window.

AppAboutEvent() - Constructor for class org.scijava.platform.event.AppAboutEvent

append(String) - Method in class org.scijava.display.DefaultTextDisplay

append(String) - Method in interface org.scijava.display.TextDisplay

Add a line to the display.

append(OutputEvent) - Method in interface org.scijava.ui.console.ConsolePane

Appends the given output to the console.

append(String) - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel

append(String) - Method in class org.scijava.util.StringMaker

append(String, Object) - Method in class org.scijava.util.StringMaker

append(String, Object, Object) - Method in class org.scijava.util.StringMaker

appendBytes(byte[], int) - Method in interface org.scijava.io.ByteBank

Appends the given bytes to the buffer

appendBytes(byte[], int, int) - Method in interface org.scijava.io.ByteBank

Appends the given bytes to the buffer

appendContents(Collection<URL>, URL) - Static method in class org.scijava.util.FileUtils

Recursively adds contents from the referenced directory to an existing collection.

appendContents(Collection<URL>, URL, boolean, boolean) - Static method in class org.scijava.util.FileUtils

Add contents from the referenced directory to an existing collection.

appEvent() - Method in class org.scijava.AbstractGateway

appEvent() - Method in interface org.scijava.Gateway

Gets this application context's AppEventService.

AppEventService - Interface in org.scijava.platform

Deprecated.

Use AppService and App instead.

AppFocusEvent - Class in org.scijava.platform.event

An event sent when the application has become the foreground app, or when it has resigned being the foreground app.

AppFocusEvent(boolean) - Constructor for class org.scijava.platform.event.AppFocusEvent

APPLICATION_MENU_ROOT - Static variable in annotation type org.scijava.plugin.Plugin

Deprecated.

Use UIDetails.APPLICATION_MENU_ROOT instead.

APPLICATION_MENU_ROOT - Static variable in interface org.scijava.UIDetails

The default, application-level menu root.

ApplicationEvent - Class in org.scijava.platform.event

An event indicating an application-level occurrence.

ApplicationEvent() - Constructor for class org.scijava.platform.event.ApplicationEvent

ApplicationFrame - Interface in org.scijava.ui

Common interface for top-level application frames.

AppMenusCreatedEvent - Class in org.scijava.platform.event

An event sent when the application has created and populated its menus.

AppMenusCreatedEvent(Object) - Constructor for class org.scijava.platform.event.AppMenusCreatedEvent

AppOpenFilesEvent - Class in org.scijava.platform.event

An event sent when the application is asked to re-open itself.

AppOpenFilesEvent(List<File>) - Constructor for class org.scijava.platform.event.AppOpenFilesEvent

AppPreferencesEvent - Class in org.scijava.platform.event

An event sent when the application is asked to open its preferences window.

AppPreferencesEvent() - Constructor for class org.scijava.platform.event.AppPreferencesEvent

AppPrintEvent - Class in org.scijava.platform.event

An event sent when the app is asked to print a list of files.

AppPrintEvent() - Constructor for class org.scijava.platform.event.AppPrintEvent

AppQuitEvent - Class in org.scijava.platform.event

An event sent when the application is asked to quit.

AppQuitEvent() - Constructor for class org.scijava.platform.event.AppQuitEvent

AppReOpenEvent - Class in org.scijava.platform.event

An event sent when the application is asked to re-open itself.

AppReOpenEvent() - Constructor for class org.scijava.platform.event.AppReOpenEvent

AppScreenSleepEvent - Class in org.scijava.platform.event

An event sent when the displays attached to the system enter and exit power save sleep.

AppScreenSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppScreenSleepEvent

AppService - Interface in org.scijava.app

Interface for application-level functionality.

AppSleepEvent - Class in org.scijava.platform.event

An event sent when a device enters or exits power save sleep.

AppSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppSleepEvent

AppSystemSleepEvent - Class in org.scijava.platform.event

An event sent when the system enters and exits power save sleep.

AppSystemSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppSystemSleepEvent

AppUserSessionEvent - Class in org.scijava.platform.event

An event sent when the the user session has been changed via Fast User Switching.

AppUserSessionEvent(boolean) - Constructor for class org.scijava.platform.event.AppUserSessionEvent

AppUtils - Class in org.scijava.util

Useful methods for obtaining details of the SciJava application environment.

AppVisibleEvent - Class in org.scijava.platform.event

An event sent when the application has been hidden or shown.

AppVisibleEvent(boolean) - Constructor for class org.scijava.platform.event.AppVisibleEvent

AQUA - Static variable in class org.scijava.util.Colors

AQUAMARINE - Static variable in class org.scijava.util.Colors

AREA_STYLE - Static variable in interface org.scijava.widget.TextWidget

Widget style for text areas.

ARGBPlane - Class in org.scijava.ui

Represents a plane of ARGB pixel data.

ARGBPlane(int, int, int[]) - Constructor for class org.scijava.ui.ARGBPlane

ARGBPlane(int, int) - Constructor for class org.scijava.ui.ARGBPlane

args() - Method in interface org.scijava.main.MainService.Main

Gets the arguments to pass to the class's main method.

args(Type, Class<?>) - Static method in class org.scijava.util.Types

Gets the type arguments of a class/interface based on a subtype.

args(Class<?>, ParameterizedType) - Static method in class org.scijava.util.Types

Tries to determine the type arguments of a class/interface based on a super parameterized type's type arguments.

Arrangeable - Interface in org.scijava.ui

Arrangeable.

Arrangeable.Arrangement - Enum in org.scijava.ui

array(T...) - Static method in class org.scijava.util.ArrayUtils

Creates an array of the given type, containing the specified values.

array(Class<?>) - Static method in class org.scijava.util.Types

Gets the array class corresponding to the given element type.

array(Class<?>, int) - Static method in class org.scijava.util.Types

Gets the array class corresponding to the given element type and dimensionality.

array(Type) - Static method in class org.scijava.util.Types

Gets the array type—which might be a Class or a GenericArrayType depending on the argument—corresponding to the given element type.

ArrayConverters - Class in org.scijava.convert

Container class for all desired combinations of PrimitiveArrayUnwrapper and PrimitiveArrayWrapper implementations.

ArrayConverters() - Constructor for class org.scijava.convert.ArrayConverters

ArrayConverters.BoolArrayUnwrapper - Class in org.scijava.convert

ArrayConverters.BoolArrayWrapper - Class in org.scijava.convert

ArrayConverters.ByteArrayUnwrapper - Class in org.scijava.convert

ArrayConverters.ByteArrayWrapper - Class in org.scijava.convert

ArrayConverters.CharArrayUnwrapper - Class in org.scijava.convert

ArrayConverters.CharArrayWrapper - Class in org.scijava.convert

ArrayConverters.DoubleArrayUnwrapper - Class in org.scijava.convert

ArrayConverters.DoubleArrayWrapper - Class in org.scijava.convert

ArrayConverters.FloatArrayUnwrapper - Class in org.scijava.convert

ArrayConverters.FloatArrayWrapper - Class in org.scijava.convert

ArrayConverters.IntArrayUnwrapper - Class in org.scijava.convert

ArrayConverters.IntArrayWrapper - Class in org.scijava.convert

ArrayConverters.LongArrayUnwrapper - Class in org.scijava.convert

ArrayConverters.LongArrayWrapper - Class in org.scijava.convert

ArrayConverters.ShortArrayUnwrapper - Class in org.scijava.convert

ArrayConverters.ShortArrayWrapper - Class in org.scijava.convert

ArrayUtils - Class in org.scijava.util

Utility class for working with arrays, particularly arrays of primitives.

as(Object, Class<T>) - Method in class org.scijava.script.process.DirectiveScriptProcessor

Coerces some object into another object of the given type.

asBigDecimal(Number) - Static method in class org.scijava.util.NumberUtils

asBigInteger(Number) - Static method in class org.scijava.util.NumberUtils

asHTML(File) - Method in class org.scijava.text.DefaultTextService

asHTML(String) - Method in interface org.scijava.text.TextFormat

Expresses the given text string in HTML format.

asHTML(File) - Method in interface org.scijava.text.TextService

Expresses the given text string as HTML.

asList(Object, Class<T>) - Method in class org.scijava.script.process.DirectiveScriptProcessor

Coerces some object into a list of objects of the given type.

asMap() - Method in interface org.scijava.parse.Items

Gets the parsed items as a map.

assertConsistency() - Method in class org.scijava.util.LastRecentlyUsed

assignProperties(MenuEntry) - Method in class org.scijava.MenuEntry

Updates any default properties of this menu entry to match those of the given menu entry.

asType(ModuleItem<?>, Class<T>) - Method in class org.scijava.command.InteractiveCommand

attach(Object) - Method in class org.scijava.log.LogMessage

Attach object to this log message.

attachments() - Method in class org.scijava.log.LogMessage

Collection of objects that have been attached to this message with LogMessage.attach(Object).

Attr - Annotation Type in org.scijava.plugin

A name/value attribute pair, used to extend the @Plugin annotation.

autocomplete(String, int, ScriptEngine) - Method in class org.scijava.script.AbstractAutoCompleter

autocomplete(String, ScriptEngine) - Method in interface org.scijava.script.AutoCompleter

autocomplete(String, int, ScriptEngine) - Method in interface org.scijava.script.AutoCompleter

AutoCompleter - Interface in org.scijava.script

Helper for generating autocomplete suggestions for code fragments.

AutoCompletionResult - Class in org.scijava.script

Data structure housing suggestions given by AutoCompleter helpers.

AutoCompletionResult(List<String>) - Constructor for class org.scijava.script.AutoCompletionResult

AutoCompletionResult(List<String>, int) - Constructor for class org.scijava.script.AutoCompletionResult

available(long) - Method in interface org.scijava.io.handle.DataHandle

Gets the number of bytes which can be read from, or written to, the data handle, bounded by the specified number of bytes.

available() - Method in class org.scijava.io.handle.DataHandleInputStream

AZURE - Static variable in class org.scijava.util.Colors

B

base64(byte[]) - Static method in class org.scijava.util.DigestUtils

Converts the given byte array to a base64 string.

BasicDetails - Interface in org.scijava

An interface defining basic characteristics including name, label, description, and a table of key/value pairs.

basicRangeCheck(long, long) - Method in interface org.scijava.io.ByteBank

Ensures that the requested range satisfies basic sanity criteria.

begin(ScriptInfo) - Method in class org.scijava.script.process.DirectiveScriptProcessor

begin(ScriptInfo) - Method in class org.scijava.script.process.ParameterScriptProcessor

begin(ScriptInfo) - Method in interface org.scijava.script.process.ScriptProcessor

begin(ScriptInfo) - Method in class org.scijava.script.process.ShebangScriptProcessor

BEIGE - Static variable in class org.scijava.util.Colors

best(String) - Static method in class org.scijava.util.DigestUtils

Gets the given string's best available hash.

best(byte[]) - Static method in class org.scijava.util.DigestUtils

Gets the given byte array's best available hash.

bestBase64(String) - Static method in class org.scijava.util.DigestUtils

Gets the base64 string of the given string's best available hash.

bestBase64(byte[]) - Static method in class org.scijava.util.DigestUtils

Gets the base64 string of the given byte array's best available hash.

bestHex(String) - Static method in class org.scijava.util.DigestUtils

Gets the hex string of the given string's best available hash.

bestHex(byte[]) - Static method in class org.scijava.util.DigestUtils

Gets the hex string of the given byte array's best available hash.

BigIntegerToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.BigIntegerToBigDecimalConverter

BISQUE - Static variable in class org.scijava.util.Colors

BLACK - Static variable in class org.scijava.util.Colors

BLANCHEDALMOND - Static variable in class org.scijava.util.Colors

BLUE - Static variable in class org.scijava.util.Colors

BLUEVIOLET - Static variable in class org.scijava.util.Colors

BoolArray - Class in org.scijava.util

An extensible array of boolean elements.

BoolArray() - Constructor for class org.scijava.util.BoolArray

Constructs an extensible array of booleans, backed by a fixed-size array.

BoolArray(int) - Constructor for class org.scijava.util.BoolArray

Constructs an extensible array of booleans, backed by a fixed-size array.

BoolArray(boolean[]) - Constructor for class org.scijava.util.BoolArray

Constructs an extensible array of booleans, backed by the given fixed-size array.

BoolArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.BoolArrayUnwrapper

BoolArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.BoolArrayWrapper

box(Class<T>) - Static method in class org.scijava.util.Types

Returns the non-primitive Class closest to the given type.

BROWN - Static variable in class org.scijava.util.Colors

BrowsableLocation - Interface in org.scijava.io.location

A Location that offers methods to browse other locations relative to it.

buffer - Variable in class org.scijava.util.LineOutputStream

buffer - Variable in class org.scijava.util.ReadInto

buildPanel(InputPanel<P, W>, Module) - Method in class org.scijava.widget.AbstractInputHarvester

buildPanel(InputPanel<P, W>, Module) - Method in interface org.scijava.widget.InputHarvester

Populates the given InputPanel with widgets corresponding to the given Module instance.

BURLYWOOD - Static variable in class org.scijava.util.Colors

Button - Interface in org.scijava.widget

A interface used for marking input fields of plugin parameter dialogs as button fields.

ButtonWidget<U> - Interface in org.scijava.widget

Widget interface for buttons.

ByteArray - Class in org.scijava.util

An extensible array of byte elements.

ByteArray() - Constructor for class org.scijava.util.ByteArray

Constructs an extensible array of bytes, backed by a fixed-size array.

ByteArray(int) - Constructor for class org.scijava.util.ByteArray

Constructs an extensible array of bytes, backed by a fixed-size array.

ByteArray(byte[]) - Constructor for class org.scijava.util.ByteArray

Constructs an extensible array of bytes, backed by the given fixed-size array.

ByteArrayByteBank - Class in org.scijava.io

ByteBank implementation backed by a ByteArray.

ByteArrayByteBank() - Constructor for class org.scijava.io.ByteArrayByteBank

Creates a ByteArrayByteBank.

ByteArrayByteBank(int) - Constructor for class org.scijava.io.ByteArrayByteBank

Creates a ByteArrayByteBank with the specified initial capacity.

ByteArrayByteBank(byte[]) - Constructor for class org.scijava.io.ByteArrayByteBank

Creates a ByteArrayByteBank that wraps the provided byte array.

ByteArrayByteBank(ByteArray) - Constructor for class org.scijava.io.ByteArrayByteBank

Creates a ByteArrayByteBank that wraps the specified ByteArray.

ByteArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.ByteArrayUnwrapper

ByteArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.ByteArrayWrapper

ByteBank - Interface in org.scijava.io

A ByteBank is a self-growing buffer over arbitrary bytes.

ByteBufferByteBank - Class in org.scijava.io.nio

A ByteBank backed by a ByteBuffer.

ByteBufferByteBank() - Constructor for class org.scijava.io.nio.ByteBufferByteBank

ByteBufferByteBank(Function<Integer, ByteBuffer>) - Constructor for class org.scijava.io.nio.ByteBufferByteBank

ByteBufferByteBank(Function<Integer, ByteBuffer>, int) - Constructor for class org.scijava.io.nio.ByteBufferByteBank

ByteBufferByteBank(int) - Constructor for class org.scijava.io.nio.ByteBufferByteBank

Bytes - Class in org.scijava.util

Useful methods for reading, writing, decoding and converting bytes and byte arrays.

bytes(String) - Static method in class org.scijava.util.DigestUtils

Converts the given string to a byte array.

bytes(int) - Static method in class org.scijava.util.DigestUtils

Converts the given integer into a byte array.

BytesHandle - Class in org.scijava.io.handle

DataHandle for a BytesLocation.

BytesHandle() - Constructor for class org.scijava.io.handle.BytesHandle

BytesLocation - Class in org.scijava.io.location

Location backed by a ByteBank.

BytesLocation(ByteBank) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by the specified ByteBank.

BytesLocation(int) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by a ByteArrayByteBank with the specified initial capacity, but with a reported size of 0.

BytesLocation(ByteArray) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by a ByteArrayByteBank that wraps the specified ByteArray.

BytesLocation(byte[]) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by a ByteArrayByteBank which wraps the specified array.

BytesLocation(byte[], int, int) - Constructor for class org.scijava.io.location.BytesLocation

Creates a BytesLocation backed by a ByteArrayByteBank with the specified initial capacity and the provided data.

ByteToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToBigDecimalConverter

ByteToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToBigIntegerConverter

ByteToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToDoubleConverter

ByteToFloatConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToFloatConverter

ByteToIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToIntegerConverter

ByteToLongConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToLongConverter

ByteToShortConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToShortConverter

C

cacheAnnotatedObjects(Class<?>, Query) - Static method in class org.scijava.util.ClassUtils

This method scans the provided class, its superclasses and interfaces for all supported Annotation : AnnotatedElement pairs.

cachedLocation(Location) - Method in class org.scijava.download.DiskLocationCache

cachedLocation(Location) - Method in interface org.scijava.download.LocationCache

Gets the cache location of a given data source.

CacheService - Interface in org.scijava.cache

Base interface for cache services in SciJava

CADETBLUE - Static variable in class org.scijava.util.Colors

call() - Method in class org.scijava.module.ModuleRunner

callback(Module) - Method in class org.scijava.module.AbstractModuleItem

callback(Module) - Method in interface org.scijava.module.ModuleItem

Invokes this item's callback function, if any, on the given module.

callback() - Method in class org.scijava.widget.DefaultWidgetModel

callback() - Method in interface org.scijava.widget.WidgetModel

Executes the callback associated with this widget's associated input.

callbacks() - Method in class org.scijava.script.ScriptInfo

Gets the list of routines which should be invoked each time the script is about to execute.

CallingClassUtils - Class in org.scijava.log

Utility class for getting the calling class of a method.

canAssign(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.isAssignable(java.lang.reflect.Type, java.lang.reflect.Type)

canAssign(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.isInstance(java.lang.Object, java.lang.Class<?>)

canCache(Location) - Method in class org.scijava.download.DiskLocationCache

canCache(Location) - Method in interface org.scijava.download.LocationCache

Gets whether the given location can be cached by this cache.

canCancel() - Method in class org.scijava.command.CommandInfo

canCancel() - Method in class org.scijava.command.DynamicCommandInfo

canCancel() - Method in interface org.scijava.module.ModuleInfo

Gets whether the module condones cancellation.

canCast(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use Types.isAssignable(Type, Type)

canCast(Object, Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use Types.isInstance(Object, Class)

canCast(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.isAssignable(java.lang.reflect.Type, java.lang.reflect.Type)

canCast(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.isInstance(java.lang.Object, java.lang.Class<?>)

cancel(String) - Method in interface org.scijava.Cancelable

Cancels the operation execution, with the given reason for doing so.

cancel() - Method in class org.scijava.command.CommandModule

Cancels the command, undoing the effects of any CommandModule.preview() calls.

cancel(String) - Method in class org.scijava.command.CommandModule

cancel(String) - Method in class org.scijava.command.ContextCommand

Cancels the command execution, with the given reason for doing so.

cancel(String) - Method in class org.scijava.command.DynamicCommand

cancel() - Method in class org.scijava.command.InteractiveCommand

cancel(String) - Method in class org.scijava.command.ModuleCommand

cancel() - Method in interface org.scijava.command.Previewable

Does whatever is necessary upon cancelation to reset things back to before the operation was executed.

cancel() - Method in class org.scijava.module.AbstractModule

cancel() - Method in interface org.scijava.module.Module

Performs necessary cleanup in response to cancellation of the module execution.

cancel(String) - Method in class org.scijava.module.process.AbstractPreprocessorPlugin

cancel() - Method in class org.scijava.options.OptionsPlugin

cancel(String) - Method in class org.scijava.task.DefaultTask

cancel(String) - Method in class org.scijava.ui.AbstractInputHarvesterPlugin

Cancelable - Interface in org.scijava

An operation that can be canceled.

canConvert(ConversionRequest) - Method in class org.scijava.convert.AbstractConverter

canConvert(Object, Type) - Method in class org.scijava.convert.AbstractConverter

canConvert(Object, Class<?>) - Method in class org.scijava.convert.AbstractConverter

canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.AbstractConverter

canConvert(Class<?>, Type) - Method in class org.scijava.convert.AbstractConverter

Deprecated.

canConvert(Object, Class<?>) - Method in class org.scijava.convert.CastingConverter

canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.CastingConverter

canConvert(ConversionRequest) - Method in interface org.scijava.convert.Converter

Checks whether a given ConversionRequest can be processed, by converting the desired ConversionRequest.sourceClass() to its ConversionRequest.destClass() or ConversionRequest.destType().

canConvert(Object, Type) - Method in interface org.scijava.convert.Converter

Checks whether the given object's type can be converted to the specified type.

canConvert(Object, Class<?>) - Method in interface org.scijava.convert.Converter

Checks whether the given object's type can be converted to the specified type.

canConvert(Class<?>, Type) - Method in interface org.scijava.convert.Converter

Deprecated.

Use Converter.canConvert(Object, Type)

canConvert(Class<?>, Class<?>) - Method in interface org.scijava.convert.Converter

Deprecated.

Use Converter.canConvert(Object, Class)

canConvert(Class<?>, Type) - Method in class org.scijava.convert.DefaultConverter

Deprecated.

canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.DefaultConverter

Deprecated.

canConvert(ConversionRequest) - Method in class org.scijava.convert.NullConverter

canConvert(Object, Type) - Method in class org.scijava.convert.NullConverter

canConvert(Object, Class<?>) - Method in class org.scijava.convert.NullConverter

canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.NullConverter

canConvert(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use ConversionUtils.canConvert(Class, Class)

canConvert(Object, Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use ConversionUtils.canConvert(Object, Class)

canConvert(Class<?>, Type) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

canConvert(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

canConvert(Object, Type) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

canConvert(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

canDisplay(Class<?>) - Method in class org.scijava.display.AbstractDisplay

canDisplay(Class<?>) - Method in interface org.scijava.display.Display

Tests whether the display is capable of visualizing objects of the given class.

canDisplay(Object) - Method in interface org.scijava.display.Display

Tests whether the display is capable of visualizing the given object.

canHandleFile(File) - Method in class org.scijava.script.ScriptLanguageIndex

canHandleFile(String) - Method in class org.scijava.script.ScriptLanguageIndex

canHandleFile(File) - Method in interface org.scijava.script.ScriptService

TODO

canHandleFile(String) - Method in interface org.scijava.script.ScriptService

TODO

canPreview() - Method in class org.scijava.command.CommandInfo

canPreview() - Method in class org.scijava.command.DynamicCommandInfo

canPreview() - Method in interface org.scijava.module.ModuleInfo

Gets whether the module supports previews.

canRunHeadless() - Method in class org.scijava.command.CommandInfo

canRunHeadless() - Method in interface org.scijava.module.ModuleInfo

Gets whether the module condones headless execution.

canRunHeadless() - Method in class org.scijava.script.ScriptInfo

canView(Display<?>) - Method in class org.scijava.ui.headless.HeadlessDisplayViewer

canView(Display<?>) - Method in interface org.scijava.ui.viewer.DisplayViewer

Returns true if an instance of this display viewer can view the given display.

canView(Display<?>) - Method in interface org.scijava.ui.viewer.text.TextDisplayViewer

capacity() - Method in class org.scijava.util.AbstractPrimitiveArray

Gets the current capacity of the backing array.

capacity() - Method in interface org.scijava.util.PrimitiveArray

Gets the current capacity of the backing array.

cast(Object, Class<T>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use Types.cast(Object, Class)

cast(Object, Class<T>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.cast(java.lang.Object, java.lang.Class<T>)

cast(Object, Class<T>) - Static method in class org.scijava.util.Types

Casts the given object to the specified type, or null if the types are incompatible.

CastingConverter - Class in org.scijava.convert

Minimal Converter implementation to do direct casting.

CastingConverter() - Constructor for class org.scijava.convert.CastingConverter

cdata(String) - Method in class org.scijava.util.XML

Obtains the CDATA identified by the given XPath expression.

cdata(Node) - Static method in class org.scijava.util.XML

Gets the CData beneath the given node.

cdata(Element, String) - Static method in class org.scijava.util.XML

Gets the CData beneath the given element's specified child.

CharArray - Class in org.scijava.util

An extensible array of char elements.

CharArray() - Constructor for class org.scijava.util.CharArray

Constructs an extensible array of chars, backed by a fixed-size array.

CharArray(int) - Constructor for class org.scijava.util.CharArray

Constructs an extensible array of chars, backed by a fixed-size array.

CharArray(char[]) - Constructor for class org.scijava.util.CharArray

Constructs an extensible array of chars, backed by the given fixed-size array.

CharArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.CharArrayUnwrapper

CharArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.CharArrayWrapper

CHARTREUSE - Static variable in class org.scijava.util.Colors

check(D, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

Throws IllegalArgumentException if (data, display) pair is incompatible.

check(boolean) - Static method in class org.scijava.util.CheckSezpoz

Deprecated.

check(File) - Static method in class org.scijava.util.CheckSezpoz

Deprecated.

checkBounds(int) - Method in class org.scijava.util.AbstractPrimitiveArray

Checks that the index is less than the size of the array.

checkDirectory(File) - Static method in class org.scijava.util.CheckSezpoz

Deprecated.

checkDirectory(File, File, long) - Static method in class org.scijava.util.CheckSezpoz

Deprecated.

CheckInputsPreprocessor - Class in org.scijava.module.process

A preprocessor plugin that does a final check of input parameters, complaining if any required ones are null.

CheckInputsPreprocessor() - Constructor for class org.scijava.module.process.CheckInputsPreprocessor

checkJar(File) - Static method in class org.scijava.util.CheckSezpoz

Deprecated.

checkObject(Object) - Method in class org.scijava.display.AbstractDisplay

checkReadPos(long, long) - Method in interface org.scijava.io.ByteBank

Check if we can read from the specified range

CheckSezpoz - Class in org.scijava.util

Deprecated.

checksum() - Method in class org.scijava.download.MultiWriteHandle

checksum() - Method in interface org.scijava.io.handle.DataHandle

Gets a "fast" checksum which succinctly represents the contents of the data stream.

checkWritePos(long, long) - Method in interface org.scijava.io.ByteBank

Check if we can write to the specified range

child(String) - Method in interface org.scijava.io.location.BrowsableLocation

Obtains a location with the given name, for whom this location is the parent.

child(String) - Method in class org.scijava.io.location.FileLocation

children() - Method in interface org.scijava.io.location.BrowsableLocation

Obtains a collection of locations for whom this location is the parent.

children() - Method in class org.scijava.io.location.FileLocation

children() - Method in class org.scijava.util.DefaultTreeNode

children() - Method in interface org.scijava.util.TreeNode

Gets the node's children.

CHOCOLATE - Static variable in class org.scijava.util.Colors

ChoiceWidget<U> - Interface in org.scijava.widget

Widget interface for multiple choice selectors.

chooseFile(File, String) - Method in class org.scijava.ui.DefaultUIService

chooseFile(String, File, String) - Method in class org.scijava.ui.DefaultUIService

chooseFile(String, File, String) - Method in class org.scijava.ui.headless.HeadlessUI

chooseFile(File, String) - Method in interface org.scijava.ui.UIService

Prompts the user to choose a file.

chooseFile(String, File, String) - Method in interface org.scijava.ui.UIService

Prompts the user to choose a file.

chooseFile(File, String) - Method in interface org.scijava.ui.UserInterface

Prompts the user to choose a file.

chooseFile(String, File, String) - Method in interface org.scijava.ui.UserInterface

Prompts the user to choose a file.

chooseFiles(File, File[], FileFilter, String) - Method in class org.scijava.ui.DefaultUIService

chooseFiles(File, List<File>, FileFilter, String) - Method in class org.scijava.ui.DefaultUIService

chooseFiles(File, File[], FileFilter, String) - Method in interface org.scijava.ui.UIService

Prompts the user to select one or multiple files.

chooseFiles(File, List<File>, FileFilter, String) - Method in interface org.scijava.ui.UIService

Prompts the user to select one or multiple files.

chooseFiles(File, File[], FileFilter, String) - Method in interface org.scijava.ui.UserInterface

Prompts the user to choose a list of files.

chooseFiles(File, List<File>, FileFilter, String) - Method in interface org.scijava.ui.UserInterface

Prompts the user to choose a list of files.

clampToRange(Class<?>, Number, Number, Number) - Static method in class org.scijava.util.NumberUtils

className() - Method in class org.scijava.annotations.IndexItem

Returns the name of the annotated class.

className() - Method in interface org.scijava.main.MainService.Main

Gets the name of the class containing the main method to run.

ClassUtils - Class in org.scijava.util

Useful methods for working with Class objects and primitive types.

cleanup() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle

Clean up data structures after a handle has been closed in the AbstractHigherOrderHandle.close() method.

cleanup() - Method in class org.scijava.io.handle.ReadBufferDataHandle

cleanup() - Method in class org.scijava.io.handle.WriteBufferDataHandle

clear() - Method in class org.scijava.display.AbstractDisplay

clear() - Method in class org.scijava.event.DefaultEventHistory

clear() - Method in interface org.scijava.event.EventHistory

Clears the recorded event history.

clear() - Method in class org.scijava.io.ByteArrayByteBank

clear() - Method in interface org.scijava.io.ByteBank

Clears the buffer

clear() - Method in class org.scijava.io.DefaultRecentFileService

clear() - Method in class org.scijava.io.nio.ByteBufferByteBank

clear() - Method in interface org.scijava.io.RecentFileService

Clears the list of recent files.

clear() - Method in class org.scijava.menu.ShadowMenu

clear() - Method in class org.scijava.object.ObjectIndex

clear(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService

clear(String, String) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

clear(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

clear(Class<?>) - Method in interface org.scijava.prefs.PrefService

Deletes all of the given Class's keys from persistent storage.

clear(String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.remove(Class, String) or PrefService.clear(Class).

clear(String, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.remove(Class, String).

clear(Class<?>, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.remove(Class, String).

clear() - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel

clear() - Method in class org.scijava.util.AbstractPrimitiveArray

clear() - Method in class org.scijava.util.LastRecentlyUsed

Empties the data structure.

clear(Class<?>) - Static method in class org.scijava.util.Prefs

Deprecated.

clear(String) - Static method in class org.scijava.util.Prefs

Deprecated.

Clears the node.

clear(Preferences, String) - Static method in class org.scijava.util.Prefs

Deprecated.

clearAll() - Method in class org.scijava.prefs.DefaultPrefService

clearAll() - Method in interface org.scijava.prefs.PrefService

Deletes all information from the data store.

clearAll() - Static method in class org.scijava.util.Prefs

Deprecated.

Clears everything.

clearParameters() - Method in class org.scijava.module.AbstractModuleInfo

Clears input and output parameters.

clearParameters() - Method in class org.scijava.script.ScriptInfo

clearStatus() - Method in class org.scijava.app.DefaultStatusService

clearStatus() - Method in interface org.scijava.app.StatusService

Clears the status message.

clone() - Method in class org.scijava.util.MersenneTwisterFast

close() - Method in class org.scijava.annotations.legacy.LegacyReader

close() - Method in class org.scijava.console.MultiOutputStream

close() - Method in class org.scijava.display.AbstractDisplay

close() - Method in interface org.scijava.display.Display

Closes the display and disposes its resources.

close() - Method in class org.scijava.download.MultiWriteHandle

close() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle

close() - Method in class org.scijava.io.handle.BytesHandle

close() - Method in class org.scijava.io.handle.DataHandleInputStream

close() - Method in class org.scijava.io.handle.DataHandleOutputStream

close() - Method in class org.scijava.io.handle.DummyHandle

close() - Method in class org.scijava.io.handle.FileHandle

close() - Method in interface org.scijava.ui.viewer.DisplayWindow

close() - Method in class org.scijava.util.LineOutputStream

Flushes the current line buffer if any bytes are left in it.

CloseConfirmable - Interface in org.scijava.ui

Interface for UI components that require the user to deal with changed state before the component can be closed.

closeLine(SourceDataLine) - Method in class org.scijava.util.TunePlayer

closeOnEOF - Variable in class org.scijava.util.ReadInto

CodeGenerator - Interface in org.scijava.script

Deprecated.

To be removed in SciJava Common 3.0.0.

CodeGeneratorJava - Class in org.scijava.script

Deprecated.

To be removed in SciJava Common 3.0.0.

CodeGeneratorJava() - Constructor for class org.scijava.script.CodeGeneratorJava

Deprecated.

CodeRunner - Interface in org.scijava.run

A plugin which extends the RunService's execution handling.

ColorRGB - Class in org.scijava.util

A color with red, green and blue color components.

ColorRGB(int, int, int) - Constructor for class org.scijava.util.ColorRGB

ColorRGB(String) - Constructor for class org.scijava.util.ColorRGB

Parses a color from the given string.

ColorRGBA - Class in org.scijava.util

A color with red, green, blue and alpha color components.

ColorRGBA(int, int, int, int) - Constructor for class org.scijava.util.ColorRGBA

Colors - Class in org.scijava.util

Predefined ColorRGB objects and related utility methods.

ColorWidget<U> - Interface in org.scijava.widget

Widget interface for color choosers.

combine(File) - Method in class org.scijava.annotations.AnnotationCombiner

Reads in annotations from all available resources and combines them.

combine() - Method in class org.scijava.util.CombineAnnotations

Deprecated.

Use AnnotationCombiner.combine(File) instead.

combine(File) - Method in interface org.scijava.util.Combiner

Combines a collection of items and writes the result to the provided directory.

combine(File) - Method in class org.scijava.util.ServiceCombiner

CombineAnnotations - Class in org.scijava.util

Deprecated.

Use AnnotationCombiner instead.

CombineAnnotations() - Constructor for class org.scijava.util.CombineAnnotations

Deprecated.

Use AnnotationCombiner.AnnotationCombiner() instead.

Combiner - Interface in org.scijava.util

Interface for combining structurally-delicate items (such as annotations) which need to be unified to a single output.

command() - Method in class org.scijava.AbstractGateway

Command - Interface in org.scijava.command

Command is a plugin that is executable.

command() - Method in interface org.scijava.Gateway

Gets this application context's CommandService.

CommandCodeRunner - Class in org.scijava.command.run

Runs the given Command class.

CommandCodeRunner() - Constructor for class org.scijava.command.run.CommandCodeRunner

CommandInfo - Class in org.scijava.command

A collection of metadata about a particular Command.

CommandInfo(String) - Constructor for class org.scijava.command.CommandInfo

Creates a new command metadata object.

CommandInfo(String, Plugin) - Constructor for class org.scijava.command.CommandInfo

Creates a new command metadata object.

CommandInfo(Class<? extends Command>) - Constructor for class org.scijava.command.CommandInfo

Creates a new command metadata object.

CommandInfo(Class<? extends Command>, Plugin) - Constructor for class org.scijava.command.CommandInfo

Creates a new command metadata object.

CommandInfo(PluginInfo<Command>) - Constructor for class org.scijava.command.CommandInfo

Creates a new command metadata object describing the same command as the given PluginInfo.

CommandInfo(PluginInfo<Command>, String, Class<? extends Command>, Plugin) - Constructor for class org.scijava.command.CommandInfo

CommandModule - Class in org.scijava.command

Module adapter class for working with a Command instance.

CommandModule(CommandInfo) - Constructor for class org.scijava.command.CommandModule

Creates a command module for the given PluginInfo.

CommandModule(CommandInfo, Command) - Constructor for class org.scijava.command.CommandModule

Creates a command module for the given CommandInfo, around the specified Command instance.

CommandModuleItem<T> - Class in org.scijava.command

ModuleItem implementation describing an input or output of a command.

CommandModuleItem(ModuleInfo, Field) - Constructor for class org.scijava.command.CommandModuleItem

CommandService - Interface in org.scijava.command

Interface for service that keeps track of available commands.

commandService() - Method in class org.scijava.platform.DefaultPlatformService

commandService() - Method in interface org.scijava.platform.PlatformService

compare(Prioritized, Prioritized) - Static method in class org.scijava.Priority

Compares two Prioritized objects.

compare(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils

Compares two Class objects using their fully qualified names.

compare(T, T) - Static method in class org.scijava.util.MiscUtils

Compares two comparable objects, even if one or both of them are null.

compare(T, T, boolean) - Static method in class org.scijava.util.MiscUtils

Compares two comparable objects, even if one or both of them are null.

compare(String, String) - Static method in class org.scijava.util.VersionUtils

Compares two version strings.

compareTo(ShadowMenu) - Method in class org.scijava.menu.ShadowMenu

compareTo(Prioritized) - Method in interface org.scijava.Prioritized

compareTo(Prioritized) - Method in interface org.scijava.UIDetails

compareTo(POM) - Method in class org.scijava.util.POM

compareVersions(String, String) - Static method in class org.scijava.util.POM

Compares two version strings.

component(Type) - Static method in class org.scijava.util.Types

Gets the component type of the given array type, or null if not an array.

configure(PlatformService) - Method in class org.scijava.platform.AbstractPlatform

configure(PlatformService) - Method in interface org.scijava.platform.Platform

Activates and configures the platform.

configure() - Method in interface org.scijava.tool.Tool

Occurs when the user right clicks this tool's icon.

confirmClose() - Method in interface org.scijava.ui.CloseConfirmable

console() - Method in class org.scijava.AbstractGateway

console() - Method in interface org.scijava.Gateway

Gets this application context's ConsoleService.

ConsoleArgument - Interface in org.scijava.console

A plugin which extends an application's command line argument handling.

ConsolePane<C> - Interface in org.scijava.ui.console

A panel which displays stdout and stderr console output.

ConsoleService - Interface in org.scijava.console

Interface for service that manages interaction with the console.

ConsoleUtils - Class in org.scijava.console

Deprecated.

Use alternatives instead (see individual method docs).

ConsoleUtils() - Constructor for class org.scijava.console.ConsoleUtils

Deprecated.

consume() - Method in class org.scijava.event.SciJavaEvent

contains(Object) - Method in class org.scijava.display.AbstractDisplay

contains(Object) - Method in class org.scijava.menu.ShadowMenu

contains(Object) - Method in class org.scijava.object.ObjectIndex

contains(Object) - Method in class org.scijava.object.SortedObjectIndex

contains(byte[], byte) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(boolean[], boolean) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(char[], char) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(double[], double) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(float[], float) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(int[], int) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(long[], long) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(short[], short) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(Object[], Object) - Static method in class org.scijava.util.ArrayUtils

Returns true if the given value is contained in the specified array.

contains(boolean) - Method in class org.scijava.util.BoolArray

contains(Object) - Method in class org.scijava.util.BoolArray

contains(byte) - Method in class org.scijava.util.ByteArray

contains(Object) - Method in class org.scijava.util.ByteArray

contains(char) - Method in class org.scijava.util.CharArray

contains(Object) - Method in class org.scijava.util.CharArray

contains(double) - Method in class org.scijava.util.DoubleArray

contains(Object) - Method in class org.scijava.util.DoubleArray

contains(float) - Method in class org.scijava.util.FloatArray

contains(Object) - Method in class org.scijava.util.FloatArray

contains(int) - Method in class org.scijava.util.IntArray

contains(Object) - Method in class org.scijava.util.IntArray

contains(IntCoords) - Method in class org.scijava.util.IntRect

Tests whether the given coordinates lie within the rectangle.

contains(Object) - Method in class org.scijava.util.LastRecentlyUsed

contains(long) - Method in class org.scijava.util.LongArray

contains(Object) - Method in class org.scijava.util.LongArray

contains(Object) - Method in class org.scijava.util.ObjectArray

contains(RealCoords) - Method in class org.scijava.util.RealRect

Tests whether the given coordinates lie within the rectangle.

contains(short) - Method in class org.scijava.util.ShortArray

contains(Object) - Method in class org.scijava.util.ShortArray

containsAll(Collection<?>) - Method in class org.scijava.display.AbstractDisplay

containsAll(Collection<?>) - Method in class org.scijava.menu.ShadowMenu

containsAll(Collection<?>) - Method in class org.scijava.object.ObjectIndex

containsAll(Collection<?>) - Method in class org.scijava.object.SortedObjectIndex

containsAll(Collection<?>) - Method in class org.scijava.util.BoolArray

containsAll(Collection<?>) - Method in class org.scijava.util.ByteArray

containsAll(Collection<?>) - Method in class org.scijava.util.CharArray

containsAll(Collection<?>) - Method in class org.scijava.util.DoubleArray

containsAll(Collection<?>) - Method in class org.scijava.util.FloatArray

containsAll(Collection<?>) - Method in class org.scijava.util.IntArray

containsAll(Collection<?>) - Method in class org.scijava.util.LastRecentlyUsed

containsAll(Collection<?>) - Method in class org.scijava.util.LongArray

containsAll(Collection<?>) - Method in class org.scijava.util.ObjectArray

containsAll(Collection<?>) - Method in class org.scijava.util.ShortArray

containsTypeVars(Type) - Static method in class org.scijava.util.Types

Learn, recursively, whether any of the type parameters associated with type are bound to variables.

context() - Method in class org.scijava.AbstractContextual

context() - Method in class org.scijava.command.CommandModule

context() - Method in class org.scijava.command.DynamicCommand

Context - Class in org.scijava

Top-level SciJava application context, which initializes and maintains a list of services.

Context() - Constructor for class org.scijava.Context

Creates a new SciJava application context with all available services.

Context(boolean) - Constructor for class org.scijava.Context

Creates a new SciJava application context.

Context(boolean, boolean) - Constructor for class org.scijava.Context

Creates a new SciJava application context.

Context(Class...) - Constructor for class org.scijava.Context

Creates a new SciJava application context with the specified services (and any required service dependencies).

Context(Collection<Class<? extends Service>>) - Constructor for class org.scijava.Context

Creates a new SciJava application context with the specified services (and any required service dependencies).

Context(Collection<Class<? extends Service>>, boolean) - Constructor for class org.scijava.Context

Creates a new SciJava application context with the specified services (and any required service dependencies).

Context(PluginIndex) - Constructor for class org.scijava.Context

Creates a new SciJava application context with all available services from the specified PluginIndex.

Context(Collection<Class<? extends Service>>, PluginIndex) - Constructor for class org.scijava.Context

Creates a new SciJava application context with the specified services (and any required service dependencies).

Context(Collection<Class<? extends Service>>, PluginIndex, boolean) - Constructor for class org.scijava.Context

Creates a new SciJava application context with the specified services (and any required service dependencies).

context() - Method in interface org.scijava.Contextual

Gets the application context to which the object belongs.

context() - Method in class org.scijava.script.ScriptInfo

context() - Method in class org.scijava.script.ScriptModule

CONTEXT_MENU_ROOT - Static variable in annotation type org.scijava.plugin.Plugin

Deprecated.

Use a context-specific menu root string instead. This one is too general. There is no such thing as a "default context menu" since such a thing wouldn't be a context menu!

ContextCommand - Class in org.scijava.command

A command that knows its context.

ContextCommand() - Constructor for class org.scijava.command.ContextCommand

ContextDisposingEvent - Class in org.scijava.event

Event to be published just before disposing a context.

ContextDisposingEvent() - Constructor for class org.scijava.event.ContextDisposingEvent

Contextual - Interface in org.scijava

An object that belongs to a SciJava application context.

ConversionRequest - Class in org.scijava.convert

Currency for use in Converter and ConvertService methods.

ConversionRequest(Object, Type) - Constructor for class org.scijava.convert.ConversionRequest

ConversionRequest(Type, Type) - Constructor for class org.scijava.convert.ConversionRequest

ConversionRequest(Object, Type, Type) - Constructor for class org.scijava.convert.ConversionRequest

ConversionUtils - Class in org.scijava.util

Deprecated.

use ConvertService and Types

convert() - Method in class org.scijava.AbstractGateway

convert(Object, Type) - Method in class org.scijava.convert.AbstractConverter

convert(ConversionRequest) - Method in class org.scijava.convert.AbstractConverter

convert(Object, Type) - Method in class org.scijava.convert.AbstractConvertService

convert(Object, Class<T>) - Method in class org.scijava.convert.AbstractConvertService

convert(ConversionRequest) - Method in class org.scijava.convert.AbstractConvertService

convert(Object, Class<T>) - Method in class org.scijava.convert.CastingConverter

convert(Object, Type) - Method in interface org.scijava.convert.Converter

As Converter.convert(Object, Class) but capable of creating and populating multi-element objects (Collections and array types).

convert(Object, Class<T>) - Method in interface org.scijava.convert.Converter

Converts the given object to an object of the specified type.

convert(ConversionRequest) - Method in interface org.scijava.convert.Converter

Converts the given ConversionRequest.sourceObject() to the specified ConversionRequest.destClass() or ConversionRequest.destType().

convert(Object, Type) - Method in interface org.scijava.convert.ConvertService

convert(Object, Class<T>) - Method in interface org.scijava.convert.ConvertService

convert(ConversionRequest) - Method in interface org.scijava.convert.ConvertService

convert(Object, Type) - Method in class org.scijava.convert.DefaultConverter

convert(Object, Class<T>) - Method in class org.scijava.convert.DefaultConverter

convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.FileArrayToStringConverter

convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.FileToStringConverter

convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.StringToFileArrayConverter

convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.StringToFileConverter

convert(Object, Class<T>) - Method in class org.scijava.convert.NullConverter

convert(Number) - Method in class org.scijava.convert.NumberToBigDecimalConverter

convert(Number) - Method in class org.scijava.convert.NumberToBigIntegerConverter

convert(Number) - Method in class org.scijava.convert.NumberToDoubleConverter

convert(Number) - Method in class org.scijava.convert.NumberToFloatConverter

convert(Number) - Method in class org.scijava.convert.NumberToIntegerConverter

convert(Number) - Method in class org.scijava.convert.NumberToLongConverter

convert(Object, Class<T>) - Method in class org.scijava.convert.NumberToNumberConverter

convert(Number) - Method in class org.scijava.convert.NumberToNumberConverter

convert(Number) - Method in class org.scijava.convert.NumberToShortConverter

convert(Object, Class<T>) - Method in class org.scijava.convert.PrimitiveArrayUnwrapper

convert(Object, Class<T>) - Method in class org.scijava.convert.PrimitiveArrayWrapper

convert(Object, Class<T>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use ConversionUtils.convert(Object, Class)

convert(Object, Type) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

convert(Object, Class<T>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

convertData(DragAndDropData) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

convertData(DragAndDropData) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Converts the given DragAndDropData to the type of data object supported by this handler.

convertDataUnchecked(DragAndDropData) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

Converts the given data to this handler's native data type, without verifying compatibility first.

Converter<I,O> - Interface in org.scijava.convert

Extensible conversion Plugin for converting between classes and types.

convertObject(Object) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

convertObject(Object) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Converts the given object to the type of data object supported by this handler.

convertObjectUnchecked(Object) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

Converts the given object to this handler's native data type, without verifying compatibility first.

ConvertService - Interface in org.scijava.convert

Service for converting between types using an extensible plugin: Converter.

convertToEnum(String, Class<T>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.enumValue(java.lang.String, java.lang.Class<T>)

copy(DataHandle<Location>, DataHandle<Location>) - Static method in class org.scijava.io.handle.DataHandles

Copies all bytes from the input to the output handle.

copy(DataHandle<Location>, DataHandle<Location>, Task) - Static method in class org.scijava.io.handle.DataHandles

Copies all bytes from the input to the output handle, reporting the progress to the provided task.

copy(DataHandle<Location>, DataHandle<Location>, int) - Static method in class org.scijava.io.handle.DataHandles

Copies up to length bytes from the input to the output handle.

copy(DataHandle<Location>, DataHandle<Location>, long, Task) - Static method in class org.scijava.io.handle.DataHandles

Copies up to length bytes from the input to the output handle, reporting the progress to the provided task.

copy(DataHandle<Location>, DataHandle<Location>, long, Task, int) - Static method in class org.scijava.io.handle.DataHandles

Copies up to length bytes from the input to the output handle, reporting the progress to the provided task.

copyArray() - Method in class org.scijava.util.AbstractPrimitiveArray

copyArray() - Method in interface org.scijava.util.PrimitiveArray

Returns a copy of the primitive-array array.

CORAL - Static variable in class org.scijava.util.Colors

CORNFLOWERBLUE - Static variable in class org.scijava.util.Colors

CORNSILK - Static variable in class org.scijava.util.Colors

create(String) - Static method in class org.scijava.input.Accelerator

Creates an accelerator from the given string representation.

create(Class<P>) - Method in interface org.scijava.plugin.PTService

Creates an instance of the given plugin class.

create(Class<P>) - Method in interface org.scijava.plugin.SingletonService

create(D) - Method in interface org.scijava.plugin.WrapperService

Creates a new plugin instance wrapping the given associated data object.

createBindings() - Method in class org.scijava.script.AbstractScriptEngine

createBindings() - Method in class org.scijava.script.AdaptedScriptEngine

createDisplay(Object) - Method in class org.scijava.display.DefaultDisplayService

createDisplay(String, Object) - Method in class org.scijava.display.DefaultDisplayService

createDisplay(Object) - Method in interface org.scijava.display.DisplayService

Creates a display for the given object, publishing a DisplayCreatedEvent to notify interested parties.

createDisplay(String, Object) - Method in interface org.scijava.display.DisplayService

Creates a display for the given object, publishing a DisplayCreatedEvent to notify interested parties.

createDisplayQuietly(Object) - Method in class org.scijava.display.DefaultDisplayService

createDisplayQuietly(Object) - Method in interface org.scijava.display.DisplayService

Creates a display for the given object, without publishing a DisplayCreatedEvent.

createDisplayWindow(Display<?>) - Method in class org.scijava.ui.headless.HeadlessUI

createDisplayWindow(Display<?>) - Method in interface org.scijava.ui.UserInterface

Creates a new display window housing the given display, or null if not applicable.

createExactService(Class<S>) - Method in class org.scijava.service.ServiceHelper

Instantiates a service of the given class, registering it in the index.

createInputPanel() - Method in interface org.scijava.widget.InputHarvester

Constructs an empty InputPanel.

createInstance() - Method in class org.scijava.command.CommandInfo

createInstance() - Method in interface org.scijava.Instantiable

Creates an object.

createInstance(PluginInfo<PT>) - Method in class org.scijava.plugin.DefaultPluginService

createInstance() - Method in class org.scijava.plugin.PluginInfo

createInstance(PluginInfo<PT>) - Method in interface org.scijava.plugin.PluginService

Creates an instance of the given plugin.

createInstances(List<PluginInfo<PT>>) - Method in class org.scijava.plugin.DefaultPluginService

createInstances(List<PluginInfo<PT>>) - Method in interface org.scijava.plugin.PluginService

Creates an instance of each of the plugins on the given list.

createInstancesOfType(Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService

createInstancesOfType(Class<PT>) - Method in interface org.scijava.plugin.PluginService

Creates one instance each of the available plugins of the given type.

createMenus(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator

createMenus(ShadowMenu, T) - Method in interface org.scijava.menu.MenuCreator

createMenus(MenuCreator<T>, T) - Method in interface org.scijava.menu.MenuService

Populates a UI-specific application menu structure.

createMenus(String, MenuCreator<T>, T) - Method in interface org.scijava.menu.MenuService

Populates a UI-specific menu structure.

createModel(InputPanel<?, ?>, Module, ModuleItem<?>, List<?>) - Method in interface org.scijava.widget.WidgetService

Create a WidgetModel for the given module input.

createModule(Command) - Method in class org.scijava.command.CommandInfo

Instantiates the module described by this module info, around the specified existing command instance.

createModule() - Method in class org.scijava.command.CommandInfo

createModule(ModuleInfo) - Method in class org.scijava.module.DefaultModuleService

createModule() - Method in interface org.scijava.module.ModuleInfo

Instantiates the module described by this module info.

createModule(ModuleInfo) - Method in interface org.scijava.module.ModuleService

Creates an instance of the given module.

createModule() - Method in interface org.scijava.module.MutableModuleInfo

createModule() - Method in class org.scijava.script.ScriptInfo

createPath(File, String) - Static method in class org.scijava.test.TestUtils

Creates an empty file at the given path, creating intermediate directories as necessary.

createTask(String) - Method in class org.scijava.task.DefaultTaskService

createTask(String) - Method in interface org.scijava.task.TaskService

Creates a new, empty Task.

createTemporaryDirectory(String) - Static method in class org.scijava.test.TestUtils

Makes a temporary directory for use with unit tests.

createTemporaryDirectory(String, Class<?>) - Static method in class org.scijava.test.TestUtils

Makes a temporary directory for use with unit tests.

createTemporaryDirectory(String, Class<?>, String) - Static method in class org.scijava.test.TestUtils

Makes a temporary directory for use with unit tests.

createTemporaryDirectory(String) - Static method in class org.scijava.util.FileUtils

Creates a temporary directory.

createTemporaryDirectory(String, String) - Static method in class org.scijava.util.FileUtils

Creates a temporary directory.

createTemporaryDirectory(String, String, File) - Static method in class org.scijava.util.FileUtils

Creates a temporary directory.

createUI() - Method in class org.scijava.ui.AbstractUserInterface

Subclasses override to control UI creation.

CRIMSON - Static variable in class org.scijava.util.Colors

CustomDrawnTool - Interface in org.scijava.tool

Tools that would like to define how they are drawn implement this interface.

CYAN - Static variable in class org.scijava.util.Colors

D

DARKBLUE - Static variable in class org.scijava.util.Colors

DARKCYAN - Static variable in class org.scijava.util.Colors

DARKGOLDENROD - Static variable in class org.scijava.util.Colors

DARKGRAY - Static variable in class org.scijava.util.Colors

DARKGREEN - Static variable in class org.scijava.util.Colors

DARKGREY - Static variable in class org.scijava.util.Colors

DARKKHAKI - Static variable in class org.scijava.util.Colors

DARKMAGENTA - Static variable in class org.scijava.util.Colors

DARKOLIVEGREEN - Static variable in class org.scijava.util.Colors

DARKORANGE - Static variable in class org.scijava.util.Colors

DARKORCHID - Static variable in class org.scijava.util.Colors

DARKRED - Static variable in class org.scijava.util.Colors

DARKSALMON - Static variable in class org.scijava.util.Colors

DARKSEAGREEN - Static variable in class org.scijava.util.Colors

DARKSLATEBLUE - Static variable in class org.scijava.util.Colors

DARKSLATEGRAY - Static variable in class org.scijava.util.Colors

DARKSLATEGREY - Static variable in class org.scijava.util.Colors

DARKTURQUOISE - Static variable in class org.scijava.util.Colors

DARKVIOLET - Static variable in class org.scijava.util.Colors

data() - Method in class org.scijava.util.DefaultTreeNode

data() - Method in interface org.scijava.util.TreeNode

Gets the data associated with the node.

DataHandle<L extends Location> - Interface in org.scijava.io.handle

A data handle is a plugin which provides both streaming and random access to bytes at a Location (e.g., files or arrays).

DataHandle.ByteOrder - Enum in org.scijava.io.handle

DataHandleInputStream<L extends Location> - Class in org.scijava.io.handle

InputStream backed by a DataHandle.

DataHandleInputStream(DataHandle<L>) - Constructor for class org.scijava.io.handle.DataHandleInputStream

Creates an input stream around the given DataHandle.

DataHandleOutputStream<L extends Location> - Class in org.scijava.io.handle

OutputStream backed by a DataHandle.

DataHandleOutputStream(DataHandle<L>) - Constructor for class org.scijava.io.handle.DataHandleOutputStream

Creates an output stream around the given DataHandle.

DataHandles - Class in org.scijava.io.handle

Utility methods for working with DataHandles.

DataHandleService - Interface in org.scijava.io.handle

Interface for low-level data I/O: reading and writing bytes using DataHandles.

DataOpenedEvent - Class in org.scijava.io.event

An event indicating that data has been opened from a source.

DataOpenedEvent(String, Object) - Constructor for class org.scijava.io.event.DataOpenedEvent

DataSavedEvent - Class in org.scijava.io.event

An event indicating that data has been saved to a destination.

DataSavedEvent(String, Object) - Constructor for class org.scijava.io.event.DataSavedEvent

DateWidget<U> - Interface in org.scijava.widget

Widget interface for dates.

deactivate() - Method in interface org.scijava.tool.Tool

Informs the tool that it is no longer active.

debug(Object) - Method in interface org.scijava.log.Logger

debug(Throwable) - Method in interface org.scijava.log.Logger

debug(Object, Throwable) - Method in interface org.scijava.log.Logger

DEBUG - Static variable in class org.scijava.log.LogLevel

DEBUG - Static variable in interface org.scijava.log.LogService

Deprecated.

Use LogLevel.DEBUG.

debug() - Method in class org.scijava.script.ScriptREPL

DebugPostprocessor - Class in org.scijava.module.process

A postprocessor plugin that dumps parameter values to the log.

DebugPostprocessor() - Constructor for class org.scijava.module.process.DebugPostprocessor

DebugPreprocessor - Class in org.scijava.module.process

A preprocessor plugin that dumps information to the log.

DebugPreprocessor() - Constructor for class org.scijava.module.process.DebugPreprocessor

DebugUtils - Class in org.scijava.util

Useful methods for debugging programs.

decode(Object) - Method in interface org.scijava.script.ScriptLanguage

Performs any necessary conversion of an encoded object retrieved from the language's script engine.

DEEPPINK - Static variable in class org.scijava.util.Colors

DEEPSKYBLUE - Static variable in class org.scijava.util.Colors

DEFAULT_BLOCK_SIZE - Static variable in interface org.scijava.io.handle.DataHandle

Default block size to use when searching through the stream.

DEFAULT_PAD_CHAR - Static variable in class org.scijava.util.StringUtils

DEFAULT_SHORTENER_THRESHOLD - Static variable in class org.scijava.util.FileUtils

DEFAULT_WEIGHT - Static variable in class org.scijava.MenuEntry

DefaultAppEventService - Class in org.scijava.platform

Deprecated.

Use AppService and App instead.

DefaultAppEventService() - Constructor for class org.scijava.platform.DefaultAppEventService

Deprecated.

DefaultAppService - Class in org.scijava.app

Default service for application-level functionality.

DefaultAppService() - Constructor for class org.scijava.app.DefaultAppService

DefaultAutoCompleter - Class in org.scijava.script

Default implementation of AutoCompleter.

DefaultAutoCompleter(ScriptLanguage) - Constructor for class org.scijava.script.DefaultAutoCompleter

DefaultCacheService - Class in org.scijava.cache

Trivial CacheService implementation.

DefaultCacheService() - Constructor for class org.scijava.cache.DefaultCacheService

DefaultCommandService - Class in org.scijava.command

Default service for working with Commands.

DefaultCommandService() - Constructor for class org.scijava.command.DefaultCommandService

DefaultConsoleService - Class in org.scijava.console

Default service for managing interaction with the console.

DefaultConsoleService() - Constructor for class org.scijava.console.DefaultConsoleService

DefaultConverter - Class in org.scijava.convert

Default Converter implementation.

DefaultConverter() - Constructor for class org.scijava.convert.DefaultConverter

DefaultConvertService - Class in org.scijava.convert

Default ConvertService implementation.

DefaultConvertService() - Constructor for class org.scijava.convert.DefaultConvertService

DefaultDataHandleService - Class in org.scijava.io.handle

Default implementation of DataHandleService.

DefaultDataHandleService() - Constructor for class org.scijava.io.handle.DefaultDataHandleService

DefaultDisplay - Class in org.scijava.display

Default display for objects, when no other displays are available.

DefaultDisplay() - Constructor for class org.scijava.display.DefaultDisplay

DefaultDisplayService - Class in org.scijava.display

Default service for working with Displays.

DefaultDisplayService() - Constructor for class org.scijava.display.DefaultDisplayService

DefaultDownloadService - Class in org.scijava.download

Default implementation of DownloadService.

DefaultDownloadService() - Constructor for class org.scijava.download.DefaultDownloadService

DefaultDragAndDropData - Class in org.scijava.ui.dnd

Default implementation of DragAndDropData, which provides a UI-agnostic way to bundle an object together with its MIME type.

DefaultDragAndDropData(Context, MIMEType, Object) - Constructor for class org.scijava.ui.dnd.DefaultDragAndDropData

DefaultDragAndDropService - Class in org.scijava.ui.dnd

Default service for handling drag and drop events.

DefaultDragAndDropService() - Constructor for class org.scijava.ui.dnd.DefaultDragAndDropService

DefaultEventBus - Class in org.scijava.event

An EventService implementation for SciJava.

DefaultEventBus(ThreadService, LogService) - Constructor for class org.scijava.event.DefaultEventBus

DefaultEventHistory - Class in org.scijava.event

Default service for keeping a history of SciJava events.

DefaultEventHistory() - Constructor for class org.scijava.event.DefaultEventHistory

DefaultEventService - Class in org.scijava.event

Default service for publishing and subscribing to SciJava events.

DefaultEventService() - Constructor for class org.scijava.event.DefaultEventService

DefaultInputService - Class in org.scijava.input

Default implementation of InputService.

DefaultInputService() - Constructor for class org.scijava.input.DefaultInputService

DefaultIOService - Class in org.scijava.io

Default implementation of IOService.

DefaultIOService() - Constructor for class org.scijava.io.DefaultIOService

DefaultLocationService - Class in org.scijava.io.location

Default LocationService implementation.

DefaultLocationService() - Constructor for class org.scijava.io.location.DefaultLocationService

DefaultLogger - Class in org.scijava.log

Default implementation of Logger.

DefaultLogger(LogListener, LogSource, int) - Constructor for class org.scijava.log.DefaultLogger

DefaultMainService - Class in org.scijava.main

Default implementation of MainService.

DefaultMainService() - Constructor for class org.scijava.main.DefaultMainService

DefaultMenuService - Class in org.scijava.menu

Default service for keeping track of the application's menu structure.

DefaultMenuService() - Constructor for class org.scijava.menu.DefaultMenuService

DefaultModuleService - Class in org.scijava.module

Default service for keeping track of and executing available modules.

DefaultModuleService() - Constructor for class org.scijava.module.DefaultModuleService

DefaultMutableModule - Class in org.scijava.module

Default MutableModule implementation, intended for subclassing.

DefaultMutableModule() - Constructor for class org.scijava.module.DefaultMutableModule

DefaultMutableModule(MutableModuleInfo) - Constructor for class org.scijava.module.DefaultMutableModule

DefaultMutableModuleInfo - Class in org.scijava.module

Default MutableModuleInfo implementation.

DefaultMutableModuleInfo() - Constructor for class org.scijava.module.DefaultMutableModuleInfo

DefaultMutableModuleItem<T> - Class in org.scijava.module

Default MutableModuleItem implementation, for use with custom MutableModule implementations.

DefaultMutableModuleItem(Module, String, Class<T>) - Constructor for class org.scijava.module.DefaultMutableModuleItem

DefaultMutableModuleItem(ModuleInfo, String, Class<T>) - Constructor for class org.scijava.module.DefaultMutableModuleItem

DefaultMutableModuleItem(ModuleInfo, ModuleItem<T>) - Constructor for class org.scijava.module.DefaultMutableModuleItem

Creates a new module item with the same values as the given item.

defaultName() - Method in interface org.scijava.io.location.Location

Gets the default name used when no explicit name is assigned.

DefaultNIOService - Class in org.scijava.io.nio

Default service for working with the java.nio package, particularly NIO ByteBuffer objects.

DefaultNIOService() - Constructor for class org.scijava.io.nio.DefaultNIOService

DefaultObjectService - Class in org.scijava.object

Default service for keeping track of registered objects.

DefaultObjectService() - Constructor for class org.scijava.object.DefaultObjectService

DefaultOptionsService - Class in org.scijava.options

Default service for keeping track of the available options and their settings.

DefaultOptionsService() - Constructor for class org.scijava.options.DefaultOptionsService

DefaultParseService - Class in org.scijava.parse

Default service for parsing strings.

DefaultParseService() - Constructor for class org.scijava.parse.DefaultParseService

DefaultPlatform - Class in org.scijava.platform

A platform implementation for default handling of platform issues.

DefaultPlatform() - Constructor for class org.scijava.platform.DefaultPlatform

DefaultPlatformService - Class in org.scijava.platform

Default service for handling platform-specific deployment issues.

DefaultPlatformService() - Constructor for class org.scijava.platform.DefaultPlatformService

DefaultPluginFinder - Class in org.scijava.plugin

Default SciJava plugin discovery mechanism.

DefaultPluginFinder() - Constructor for class org.scijava.plugin.DefaultPluginFinder

DefaultPluginFinder(ClassLoader) - Constructor for class org.scijava.plugin.DefaultPluginFinder

DefaultPluginService - Class in org.scijava.plugin

Default service for keeping track of available plugins.

DefaultPluginService() - Constructor for class org.scijava.plugin.DefaultPluginService

DefaultPrefService - Class in org.scijava.prefs

Default PrefService implementation, which persists preferences to disk using the Preferences API.

DefaultPrefService() - Constructor for class org.scijava.prefs.DefaultPrefService

DefaultRecentFileService - Class in org.scijava.io

Default service for managing the Recently Used Files menu.

DefaultRecentFileService() - Constructor for class org.scijava.io.DefaultRecentFileService

DefaultRunService - Class in org.scijava.run

Default service for managing available CodeRunner plugins.

DefaultRunService() - Constructor for class org.scijava.run.DefaultRunService

DefaultScriptHeaderService - Class in org.scijava.script

Default ScriptHeaderService implementation.

DefaultScriptHeaderService() - Constructor for class org.scijava.script.DefaultScriptHeaderService

DefaultScriptInterpreter - Class in org.scijava.script

The default implementation of a ScriptInterpreter.

DefaultScriptInterpreter(PrefService, ScriptService, ScriptLanguage) - Constructor for class org.scijava.script.DefaultScriptInterpreter

Deprecated.

Use DefaultScriptInterpreter.DefaultScriptInterpreter(ScriptLanguage) instead.

DefaultScriptInterpreter(ScriptLanguage) - Constructor for class org.scijava.script.DefaultScriptInterpreter

Creates a new script interpreter for the given script language.

DefaultScriptInterpreter(ScriptLanguage, ScriptEngine) - Constructor for class org.scijava.script.DefaultScriptInterpreter

Creates a new script interpreter for the given script language, using the specified script engine.

DefaultScriptProcessorService - Class in org.scijava.script.process

Default implementation of ScriptProcessorService.

DefaultScriptProcessorService() - Constructor for class org.scijava.script.process.DefaultScriptProcessorService

DefaultScriptService - Class in org.scijava.script

Default service for working with scripts.

DefaultScriptService() - Constructor for class org.scijava.script.DefaultScriptService

DefaultStartupService - Class in org.scijava.startup

Default implementation of StartupService.

DefaultStartupService() - Constructor for class org.scijava.startup.DefaultStartupService

DefaultStatusService - Class in org.scijava.app

Default service for status notifications.

DefaultStatusService() - Constructor for class org.scijava.app.DefaultStatusService

DefaultTask - Class in org.scijava.task

Default implementation of Task.

DefaultTask(ThreadService, EventService) - Constructor for class org.scijava.task.DefaultTask

Creates a new task.

DefaultTaskService - Class in org.scijava.task

Default implementation of TaskService.

DefaultTaskService() - Constructor for class org.scijava.task.DefaultTaskService

DefaultTextDisplay - Class in org.scijava.display

Default display for text.

DefaultTextDisplay() - Constructor for class org.scijava.display.DefaultTextDisplay

DefaultTextService - Class in org.scijava.text

Default service for working with text formats.

DefaultTextService() - Constructor for class org.scijava.text.DefaultTextService

DefaultThreadService - Class in org.scijava.thread

Default service for managing active threads.

DefaultThreadService() - Constructor for class org.scijava.thread.DefaultThreadService

DefaultToolService - Class in org.scijava.tool

Default service for keeping track of available tools, including which tool is active, and delegating UI events to the active tool.

DefaultToolService() - Constructor for class org.scijava.tool.DefaultToolService

DefaultTreeNode<T> - Class in org.scijava.util

Default implementation of TreeNode.

DefaultTreeNode(T, TreeNode<?>) - Constructor for class org.scijava.util.DefaultTreeNode

Creates a new tree node wrapping the given data, located in the tree beneath the specified parent.

DefaultUIService - Class in org.scijava.ui

Default service for handling SciJava user interfaces.

DefaultUIService() - Constructor for class org.scijava.ui.DefaultUIService

DefaultUncaughtExceptionHandler - Class in org.scijava.log

A handler for otherwise uncaught exceptions.

DefaultUncaughtExceptionHandler(LogService) - Constructor for class org.scijava.log.DefaultUncaughtExceptionHandler

defaultValue() - Method in class org.scijava.util.BoolArray

defaultValue() - Method in class org.scijava.util.ByteArray

defaultValue() - Method in class org.scijava.util.CharArray

defaultValue() - Method in class org.scijava.util.DoubleArray

defaultValue() - Method in class org.scijava.util.FloatArray

defaultValue() - Method in class org.scijava.util.IntArray

defaultValue() - Method in class org.scijava.util.LongArray

defaultValue() - Method in class org.scijava.util.ObjectArray

defaultValue() - Method in interface org.scijava.util.PrimitiveArray

defaultValue() - Method in class org.scijava.util.ShortArray

DefaultValuePreprocessor - Class in org.scijava.module.process

A preprocessor plugin that populates default parameter values.

DefaultValuePreprocessor() - Constructor for class org.scijava.module.process.DefaultValuePreprocessor

DefaultWelcomeService - Class in org.scijava.welcome

Default service for displaying the welcome greeting.

DefaultWelcomeService() - Constructor for class org.scijava.welcome.DefaultWelcomeService

DefaultWidgetModel - Class in org.scijava.widget

The backing data model for a particular InputWidget.

DefaultWidgetModel(Context, InputPanel<?, ?>, Module, ModuleItem<?>, List<?>) - Constructor for class org.scijava.widget.DefaultWidgetModel

DefaultWidgetService - Class in org.scijava.widget

Default service for managing available InputWidgets.

DefaultWidgetService() - Constructor for class org.scijava.widget.DefaultWidgetService

DELAY_IN_MICROSECONDS - Static variable in class org.scijava.util.MirrorWebsite

delete(int, int) - Method in class org.scijava.util.AbstractPrimitiveArray

Shifts the array to delete space starting at a specified index.

delete(int, int) - Method in interface org.scijava.util.PrimitiveArray

Shifts the array to delete space starting at a specified index.

deleteRecursively(File) - Static method in class org.scijava.util.FileUtils

Deletes a directory recursively.

Desktop - Interface in org.scijava.ui

Marker interface for MDI Desktop manager

destClass() - Method in class org.scijava.convert.ConversionRequest

destination() - Method in interface org.scijava.download.Download

destType() - Method in class org.scijava.convert.ConversionRequest

DialogPrompt - Interface in org.scijava.ui

TODO

dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.headless.HeadlessUI

dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in interface org.scijava.ui.UserInterface

Creates a dialog prompter.

DialogPrompt.MessageType - Enum in org.scijava.ui

DialogPrompt.OptionType - Enum in org.scijava.ui

DialogPrompt.Result - Enum in org.scijava.ui

digest(String, byte[]) - Static method in class org.scijava.util.DigestUtils

Gets the given byte array's hash value according to the specified algorithm.

DigestUtils - Class in org.scijava.util

Utility class for computing cryptographic hashes.

DIMGRAY - Static variable in class org.scijava.util.Colors

DIMGREY - Static variable in class org.scijava.util.Colors

DirectiveScriptProcessor - Class in org.scijava.script.process

Abstract base class for ScriptProcessor plugins that parse lines of the form #@directive(...) ....

DirectiveScriptProcessor(Predicate<String>) - Constructor for class org.scijava.script.process.DirectiveScriptProcessor

DIRECTORIES_ONLY - Static variable in interface org.scijava.widget.FileListWidget

Widget style to allow directory selection only

DIRECTORY_STYLE - Static variable in interface org.scijava.widget.FileWidget

Widget style for directory chooser dialogs.

DirectoryIndexer - Class in org.scijava.annotations

Indexes a directory of classes.

DirectoryIndexer() - Constructor for class org.scijava.annotations.DirectoryIndexer

discover() - Method in class org.scijava.plugin.PluginIndex

Adds all plugins discovered by the attached PluginFinder to this index, or does nothing if the attached PluginFinder is null.

discoverAnnotations(File, String, ClassLoader) - Method in class org.scijava.annotations.DirectoryIndexer

DiskLocationCache - Class in org.scijava.download

A file-based implementation of LocationCache.

DiskLocationCache() - Constructor for class org.scijava.download.DiskLocationCache

display() - Method in class org.scijava.AbstractGateway

display(Object) - Method in class org.scijava.display.AbstractDisplay

Display<T> - Interface in org.scijava.display

A display is a particular type of plugin intended to collect objects for visualization.

display(Object) - Method in interface org.scijava.display.Display

Displays the given object in this display.

display() - Method in interface org.scijava.Gateway

Gets this application context's DisplayService.

Displayable - Interface in org.scijava.display

An interface used by classes that can draw on demand.

DisplayActivatedEvent - Class in org.scijava.display.event

An event indicating a display has become the active one.

DisplayActivatedEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayActivatedEvent

DisplayCreatedEvent - Class in org.scijava.display.event

An event indicating a new display has been created.

DisplayCreatedEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayCreatedEvent

DisplayDeletedEvent - Class in org.scijava.display.event

An event indicating a display has been deleted.

DisplayDeletedEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayDeletedEvent

DisplayEvent - Class in org.scijava.display.event

An event indicating something has happened to a Display.

DisplayEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayEvent

DisplayPanel - Interface in org.scijava.ui.viewer

The panel housing a particular Display.

DisplayPostprocessor - Class in org.scijava.display

Displays outputs upon completion of a module execution.

DisplayPostprocessor() - Constructor for class org.scijava.display.DisplayPostprocessor

DisplayService - Interface in org.scijava.display

Interface for service that tracks available Displays.

DisplayUpdatedEvent - Class in org.scijava.display.event

An event indicating a display has updated; e.g., an object has been added or removed.

DisplayUpdatedEvent(Display<?>, DisplayUpdatedEvent.DisplayUpdateLevel) - Constructor for class org.scijava.display.event.DisplayUpdatedEvent

DisplayUpdatedEvent.DisplayUpdateLevel - Enum in org.scijava.display.event

The display update level gives a hint about how much work needs to be done during the update.

DisplayViewer<T> - Interface in org.scijava.ui.viewer

A display viewer is a UI widget that shows a display to a user.

displayWelcome() - Method in class org.scijava.welcome.DefaultWelcomeService

displayWelcome() - Method in interface org.scijava.welcome.WelcomeService

Displays the welcome greeting.

DisplayWindow - Interface in org.scijava.ui.viewer

A user interface window associated with a Display, containing a DisplayPanel.

Disposable - Interface in org.scijava

An object that knows how to clean up after itself.

dispose() - Method in class org.scijava.console.DefaultConsoleService

dispose() - Method in class org.scijava.Context

dispose() - Method in interface org.scijava.Disposable

Performs any needed cleanup of the object's services, in preparation for the object being retired (e.g., to make garbage collection possible).

dispose() - Method in class org.scijava.event.DefaultEventService

dispose() - Method in class org.scijava.platform.DefaultPlatformService

dispose() - Method in class org.scijava.thread.DefaultThreadService

dispose() - Method in class org.scijava.ui.DefaultUIService

dispose() - Method in class org.scijava.ui.headless.HeadlessUI

dispose() - Method in interface org.scijava.ui.viewer.DisplayViewer

DODGERBLUE - Static variable in class org.scijava.util.Colors

done - Variable in class org.scijava.util.ReadInto

done() - Method in class org.scijava.util.ReadInto

doRefresh() - Method in class org.scijava.ui.AbstractUIInputWidget

Performs the intended AbstractUIInputWidget.refreshWidget() operation.

DoubleArray - Class in org.scijava.util

An extensible array of double elements.

DoubleArray() - Constructor for class org.scijava.util.DoubleArray

Constructs an extensible array of doubles, backed by a fixed-size array.

DoubleArray(int) - Constructor for class org.scijava.util.DoubleArray

Constructs an extensible array of doubles, backed by a fixed-size array.

DoubleArray(double[]) - Constructor for class org.scijava.util.DoubleArray

Constructs an extensible array of doubles, backed by the given fixed-size array.

DoubleArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.DoubleArrayUnwrapper

DoubleArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.DoubleArrayWrapper

DoubleToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.DoubleToBigDecimalConverter

download(Location, Location) - Method in class org.scijava.download.DefaultDownloadService

download(Location, Location, LocationCache) - Method in class org.scijava.download.DefaultDownloadService

Download - Interface in org.scijava.download

Object representing an asynchronous download task.

download(Location, Location) - Method in interface org.scijava.download.DownloadService

Downloads data from the given source, storing it into the given destination.

download(Location, Location, LocationCache) - Method in interface org.scijava.download.DownloadService

Downloads data from the given source, storing it into the given destination.

DownloadService - Interface in org.scijava.download

Service for managing retrieval of remote resources.

downOctave() - Method in class org.scijava.util.TunePlayer

DragAndDropData - Interface in org.scijava.ui.dnd

Interface for drag-and-drop data.

DragAndDropEvent - Class in org.scijava.ui.dnd.event

An event indicating drag-and-drop activity in a display.

DragAndDropEvent(Display<?>) - Constructor for class org.scijava.ui.dnd.event.DragAndDropEvent

DragAndDropEvent(Display<?>, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragAndDropEvent

DragAndDropEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragAndDropEvent

DragAndDropHandler<D> - Interface in org.scijava.ui.dnd

Interface for drag-and-drop handlers.

DragAndDropService - Interface in org.scijava.ui.dnd

Interface for service that handles drag and drop events.

DragEnterEvent - Class in org.scijava.ui.dnd.event

An event indicating an object was dragged onto a display.

DragEnterEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragEnterEvent

DragExitEvent - Class in org.scijava.ui.dnd.event

An event indicating an object was dragged off of a display.

DragExitEvent(Display<?>) - Constructor for class org.scijava.ui.dnd.event.DragExitEvent

DragOverEvent - Class in org.scijava.ui.dnd.event

An event indicating an object was dragged within a display.

DragOverEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragOverEvent

draw() - Method in interface org.scijava.display.Displayable

Render self when called.

drawIcon() - Method in interface org.scijava.tool.CustomDrawnTool

drop(D, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Performs a drop operation with the given data object in the specified Display.

drop(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService

Performs a drag-and-drop operation in the given display with the specified DragAndDropData, using the first available compatible handler.

drop(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService

Performs a drag-and-drop operation in the given display with the specified data object, using the first available compatible handler.

drop(File, Display<?>) - Method in class org.scijava.ui.dnd.FileDragAndDropHandler

drop(List<?>, Display<?>) - Method in class org.scijava.ui.dnd.ListDragAndDropHandler

drop(File, Display<?>) - Method in class org.scijava.ui.dnd.ScriptFileDragAndDropHandler

dropData(DragAndDropData, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

dropData(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Performs a drop operation with the given data in the specified Display.

DropEvent - Class in org.scijava.ui.dnd.event

An event indicating an object was dropped onto a display.

DropEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DropEvent

dropObject(Object, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

dropObject(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Performs a drop operation with the given data in the specified Display.

DummyHandle - Class in org.scijava.io.handle

A DataHandle which reads all zeroes, and writes no actual data.

DummyHandle() - Constructor for class org.scijava.io.handle.DummyHandle

DummyLocation - Class in org.scijava.io.location

Location backed by nothing whatsoever.

DummyLocation() - Constructor for class org.scijava.io.location.DummyLocation

DummyTool - Class in org.scijava.tool

A tool that does nothing.

DummyTool() - Constructor for class org.scijava.tool.DummyTool

DynamicCommand - Class in org.scijava.command

A command with a variable number of inputs and outputs.

DynamicCommand() - Constructor for class org.scijava.command.DynamicCommand

DynamicCommandInfo - Class in org.scijava.command

Helper class for maintaining a DynamicCommand's associated ModuleInfo.

DynamicCommandInfo(CommandInfo, Class<? extends DynamicCommand>) - Constructor for class org.scijava.command.DynamicCommandInfo

E

EclipseHelper - Class in org.scijava.annotations

Helps Eclipse's lack of support for annotation processing in incremental build mode.

EclipseHelper() - Constructor for class org.scijava.annotations.EclipseHelper

EDIT_LABEL - Static variable in class org.scijava.menu.MenuConstants

EDIT_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants

EDIT_WEIGHT - Static variable in class org.scijava.menu.MenuConstants

elements(String) - Method in class org.scijava.util.XML

Obtains the elements identified by the given XPath expression.

elements(NodeList) - Static method in class org.scijava.util.XML

Gets the element nodes from the given node list.

elements(Element, String) - Static method in class org.scijava.util.XML

Gets the given element's specified child elements.

end() - Method in class org.scijava.script.process.ParameterScriptProcessor

end() - Method in interface org.scijava.script.process.ScriptProcessor

engineScopeBindings - Variable in class org.scijava.script.AbstractScriptEngine

ensure(int) - Method in class org.scijava.util.LineOutputStream

Increases the size of the line buffer if necessary.

ensureCapacity(int) - Method in class org.scijava.util.AbstractPrimitiveArray

ensureCapacity(int) - Method in interface org.scijava.util.PrimitiveArray

Makes sure the backing array at least a specified capacity.

ensureCapacity(int) - Method in class org.scijava.util.SizableArrayList

ensureOpen() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle

ensureOpen() - Method in class org.scijava.io.handle.WriteBufferDataHandle

ensureReadable(long) - Method in interface org.scijava.io.handle.DataHandle

Ensures that the handle has sufficient bytes available to read.

ensureWritable(long) - Method in interface org.scijava.io.handle.DataHandle

Ensures that the handle has the correct length to be written to, and extends it as required.

enumValue(String, Class<T>) - Static method in class org.scijava.util.Types

Converts the given string value to an enumeration constant of the specified type.

equal(Object, Object) - Static method in class org.scijava.util.MiscUtils

Deprecated.

Use Objects.equals(Object, Object) instead.

equals(Object) - Method in class org.scijava.input.Accelerator

equals(Object) - Method in class org.scijava.input.InputModifiers

equals(Object) - Method in class org.scijava.io.location.AbstractLocation

equals(Object) - Method in class org.scijava.io.location.BytesLocation

equals(Object) - Method in class org.scijava.ui.dnd.MIMEType

equals(Object) - Method in class org.scijava.util.ColorRGB

equals(Object) - Method in class org.scijava.util.IntCoords

equals(Object) - Method in class org.scijava.util.IntRect

equals(Object) - Method in class org.scijava.util.RealCoords

equals(Object) - Method in class org.scijava.util.RealRect

error(Object) - Method in interface org.scijava.log.Logger

error(Throwable) - Method in interface org.scijava.log.Logger

error(Object, Throwable) - Method in interface org.scijava.log.Logger

ERROR - Static variable in class org.scijava.log.LogLevel

ERROR - Static variable in interface org.scijava.log.LogService

Deprecated.

Use LogLevel.ERROR.

errorWriter - Variable in class org.scijava.script.AbstractScriptContext

eval(String) - Method in class org.scijava.script.AbstractScriptEngine

eval(Reader) - Method in class org.scijava.script.AbstractScriptEngine

eval(String, ScriptContext) - Method in class org.scijava.script.AbstractScriptEngine

eval(Reader, ScriptContext) - Method in class org.scijava.script.AbstractScriptEngine

eval(String, Bindings) - Method in class org.scijava.script.AbstractScriptEngine

eval(Reader, Bindings) - Method in class org.scijava.script.AbstractScriptEngine

eval(String, ScriptContext) - Method in class org.scijava.script.AdaptedScriptEngine

eval(Reader, ScriptContext) - Method in class org.scijava.script.AdaptedScriptEngine

eval(String) - Method in class org.scijava.script.AdaptedScriptEngine

eval(Reader) - Method in class org.scijava.script.AdaptedScriptEngine

eval(String, Bindings) - Method in class org.scijava.script.AdaptedScriptEngine

eval(Reader, Bindings) - Method in class org.scijava.script.AdaptedScriptEngine

eval(String) - Method in class org.scijava.script.DefaultScriptInterpreter

eval(String) - Method in interface org.scijava.script.ScriptInterpreter

Evaluates a command.

evaluate(String) - Method in class org.scijava.script.ScriptREPL

Evaluates the line, including handling of special colon-prefixed REPL commands.

event() - Method in class org.scijava.AbstractGateway

event() - Method in interface org.scijava.Gateway

Gets this application context's EventService.

EventDetails - Class in org.scijava.event

Caches details of a particular SciJavaEvent, without saving the event itself (since doing so could leave dangling references).

EventDetails(SciJavaEvent) - Constructor for class org.scijava.event.EventDetails

EventHandler - Annotation Type in org.scijava.event

Annotation identifying an event handler method.

eventHistory() - Method in class org.scijava.AbstractGateway

EventHistory - Interface in org.scijava.event

Interface for service that keeps a history of SciJava events.

eventHistory() - Method in interface org.scijava.Gateway

Gets this application context's EventHistory.

EventHistoryListener - Interface in org.scijava.event

Listener for event history changes.

eventOccurred(EventDetails) - Method in interface org.scijava.event.EventHistoryListener

eventService() - Method in interface org.scijava.command.CommandService

eventService() - Method in class org.scijava.command.DefaultCommandService

eventService() - Method in class org.scijava.display.DefaultDisplayService

eventService() - Method in interface org.scijava.display.DisplayService

EventService - Interface in org.scijava.event

Interface for the event handling service.

eventService() - Method in class org.scijava.input.DefaultInputService

eventService() - Method in interface org.scijava.input.InputService

eventService() - Method in class org.scijava.object.DefaultObjectService

eventService() - Method in interface org.scijava.object.ObjectService

eventService - Variable in class org.scijava.options.OptionsPlugin

eventService() - Method in class org.scijava.platform.DefaultPlatformService

eventService() - Method in interface org.scijava.platform.PlatformService

EventSubscriber<E extends SciJavaEvent> - Interface in org.scijava.event

Interface for subscribers that wish to be notified of SciJava events.

exec() - Method in interface org.scijava.main.MainService.Main

Runs the main method with the associated arguments.

exec(String...) - Method in class org.scijava.platform.DefaultPlatformService

exec(String...) - Method in interface org.scijava.platform.PlatformService

Executes a native program and waits for it to return.

exec(File, PrintStream, PrintStream, String...) - Static method in class org.scijava.util.ProcessUtils

Executes a program.

exec(File, InputStream, PrintStream, PrintStream, String...) - Static method in class org.scijava.util.ProcessUtils

Executes a program.

exec(String) - Method in class org.scijava.util.ReflectedUniverse

Executes a command in the universe.

execMains() - Method in class org.scijava.main.DefaultMainService

execMains() - Method in interface org.scijava.main.MainService

Executes registered main classes, in the order they were registered.

execute(Object, Object...) - Method in class org.scijava.module.MethodRef

executeOperations() - Method in class org.scijava.startup.DefaultStartupService

executeOperations() - Method in interface org.scijava.startup.StartupService

Execute all registered startup operations, in the order they were registered, blocking until complete.

exists() - Method in class org.scijava.download.MultiWriteHandle

exists() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle

exists() - Method in class org.scijava.io.handle.BytesHandle

exists() - Method in interface org.scijava.io.handle.DataHandle

Tests whether this handle's location actually exists at the source.

exists(Location) - Method in interface org.scijava.io.handle.DataHandleService

Convenience method to test whether it describes an existing file.

exists() - Method in class org.scijava.io.handle.DummyHandle

exists() - Method in class org.scijava.io.handle.FileHandle

EXTREMELY_HIGH - Static variable in class org.scijava.Priority

Priority for items that very strongly prefer to be sorted early.

EXTREMELY_LOW - Static variable in class org.scijava.Priority

Priority for items that very strongly prefer to be sorted late.

F

field(Class<?>, String) - Static method in class org.scijava.util.Types

Gets the field with the specified name, of the given class, or superclass thereof.

FIELD_STYLE - Static variable in interface org.scijava.widget.TextWidget

Widget style for text fields.

fieldType(Field, Class<?>) - Static method in class org.scijava.util.Types

Returns the "safe" generic type of the given field, as viewed from the given type.

FILE_LABEL - Static variable in class org.scijava.menu.MenuConstants

FILE_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants

FILE_NAME - Static variable in class org.scijava.util.CheckSezpoz

Deprecated.

FILE_WEIGHT - Static variable in class org.scijava.menu.MenuConstants

FileArrayToStringConverter() - Constructor for class org.scijava.convert.FileListConverters.FileArrayToStringConverter

FileDragAndDropHandler - Class in org.scijava.ui.dnd

Drag-and-drop handler for files.

FileDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.FileDragAndDropHandler

FileHandle - Class in org.scijava.io.handle

DataHandle for a FileLocation.

FileHandle() - Constructor for class org.scijava.io.handle.FileHandle

FileListConverters - Class in org.scijava.convert

A collection of Converter plugins for going between String, File and File[].

FileListConverters() - Constructor for class org.scijava.convert.FileListConverters

FileListConverters.FileArrayToStringConverter - Class in org.scijava.convert

FileListConverters.FileToStringConverter - Class in org.scijava.convert

FileListConverters.StringToFileArrayConverter - Class in org.scijava.convert

FileListConverters.StringToFileConverter - Class in org.scijava.convert

FileListPreprocessor - Class in org.scijava.ui

FileListPreprocessor() - Constructor for class org.scijava.ui.FileListPreprocessor

FileListWidget<U> - Interface in org.scijava.widget

FileLocation - Class in org.scijava.io.location

Location backed by a File on disk.

FileLocation(File) - Constructor for class org.scijava.io.location.FileLocation

FileLocation(String) - Constructor for class org.scijava.io.location.FileLocation

FileLocation(URI) - Constructor for class org.scijava.io.location.FileLocation

FileLocationResolver - Class in org.scijava.io.location

Implementation of LocationResolver for FileLocation.

FileLocationResolver() - Constructor for class org.scijava.io.location.FileLocationResolver

FilePreprocessor - Class in org.scijava.ui

A preprocessor plugin that handles single unresolved parameters of type File using a UI prompt.

FilePreprocessor() - Constructor for class org.scijava.ui.FilePreprocessor

FILES_AND_DIRECTORIES - Static variable in interface org.scijava.widget.FileListWidget

Widget style to allow selection of both files and directories

FILES_ONLY - Static variable in interface org.scijava.widget.FileListWidget

Widget style to allow file selection only

FileToStringConverter() - Constructor for class org.scijava.convert.FileListConverters.FileToStringConverter

FileUtils - Class in org.scijava.util

Useful methods for working with file paths.

FileWidget<U> - Interface in org.scijava.widget

Widget interface for file selectors.

filterInstances(List<Platform>) - Method in class org.scijava.platform.DefaultPlatformService

filterInstances(List<PT>) - Method in interface org.scijava.plugin.SingletonService

Filters the given list of instances by this service's inclusion criteria.

find(DT) - Method in interface org.scijava.plugin.TypedService

Gets a new instance of the highest priority plugin managed by this service which supports the given data object according to the Typed interface.

findDisplayContentScreenX() - Method in interface org.scijava.ui.viewer.DisplayWindow

Finds the x coordinate on the screen of the origin of the display window's content.

findDisplayContentScreenY() - Method in interface org.scijava.ui.viewer.DisplayWindow

Finds the y coordinate on the screen of the origin of the display window's content.

findPlugins(List<PluginInfo<?>>) - Method in class org.scijava.plugin.DefaultPluginFinder

findPlugins(List<PluginInfo<?>>) - Method in interface org.scijava.plugin.PluginFinder

Populates the given list with all available SciJava plugins.

findPluginsOfClass(String, List<? extends PluginInfo<?>>, List<T>) - Static method in class org.scijava.plugin.DefaultPluginService

Transfers plugins of the given class from the source list to the destination list.

findResources(String, String, File) - Static method in class org.scijava.util.FileUtils

Finds URLs of available resources.

findResources(String, Iterable<URL>) - Static method in class org.scijava.util.FileUtils

Finds URLs of resources known to the system.

findScripts(List<ScriptInfo>) - Method in class org.scijava.script.ScriptFinder

Discovers the scripts.

findString(String...) - Method in interface org.scijava.io.handle.DataHandle

Reads a string ending with one of the given terminating substrings.

findString(boolean, String...) - Method in interface org.scijava.io.handle.DataHandle

Reads or skips a string ending with one of the given terminating substrings.

findString(int, String...) - Method in interface org.scijava.io.handle.DataHandle

Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.

findString(boolean, int, String...) - Method in interface org.scijava.io.handle.DataHandle

Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.

FIREBRICK - Static variable in class org.scijava.util.Colors

FIRST - Static variable in class org.scijava.Priority

Priority for items that must be sorted first.

first(List<T>) - Static method in class org.scijava.util.ListUtils

Gets the first element of the given list, or null if none.

FIRST_PRIORITY - Static variable in class org.scijava.Priority

Deprecated.

Use Priority.FIRST instead.

fix(File, File) - Static method in class org.scijava.util.CheckSezpoz

Deprecated.

FloatArray - Class in org.scijava.util

An extensible array of float elements.

FloatArray() - Constructor for class org.scijava.util.FloatArray

Constructs an extensible array of floats, backed by a fixed-size array.

FloatArray(int) - Constructor for class org.scijava.util.FloatArray

Constructs an extensible array of floats, backed by a fixed-size array.

FloatArray(float[]) - Constructor for class org.scijava.util.FloatArray

Constructs an extensible array of floats, backed by the given fixed-size array.

FloatArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.FloatArrayUnwrapper

FloatArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.FloatArrayWrapper

FloatToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.FloatToBigDecimalConverter

FloatToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.FloatToDoubleConverter

FLORALWHITE - Static variable in class org.scijava.util.Colors

flush() - Method in class org.scijava.console.MultiOutputStream

flush() - Method in class org.scijava.io.handle.DataHandleOutputStream

flush() - Method in class org.scijava.util.LineOutputStream

If any bytes are in the current line buffer, output the line via LineOutputStream.println(String), stripping any trailing new-line characters.

FORESTGREEN - Static variable in class org.scijava.util.Colors

format(double) - Static method in class org.scijava.util.UnitUtils

foundAnnotations() - Method in class org.scijava.annotations.AbstractIndexWriter

fromDouble(double, boolean) - Static method in class org.scijava.util.Bytes

Translates the double value into an array of eight bytes.

fromDoubles(double[], boolean) - Static method in class org.scijava.util.Bytes

Translates an array of double values into an array of byte values.

fromFloat(float, boolean) - Static method in class org.scijava.util.Bytes

Translates the float value into an array of four bytes.

fromFloats(float[], boolean) - Static method in class org.scijava.util.Bytes

Translates an array of float values into an array of byte values.

fromHSVColor(double, double, double) - Static method in class org.scijava.util.ColorRGB

fromHTMLColor(String) - Static method in class org.scijava.util.ColorRGB

Convert a string in the format specified by CSS Color Module Level 3 - W3C Recommendation 07 June 2011 to a ColorRGB object.

fromInt(int, boolean) - Static method in class org.scijava.util.Bytes

Translates the int value into an array of four bytes.

fromInts(int[], boolean) - Static method in class org.scijava.util.Bytes

Translates an array of int values into an array of byte values.

fromLong(long, boolean) - Static method in class org.scijava.util.Bytes

Translates the long value into an array of eight bytes.

fromLongs(long[], boolean) - Static method in class org.scijava.util.Bytes

Translates an array of long values into an array of byte values.

fromShort(short, boolean) - Static method in class org.scijava.util.Bytes

Translates the short value into an array of two bytes.

fromShorts(short[], boolean) - Static method in class org.scijava.util.Bytes

Translates an array of short values into an array of byte values.

FUCHSIA - Static variable in class org.scijava.util.Colors

G

GAINSBORO - Static variable in class org.scijava.util.Colors

Gateway - Interface in org.scijava

Interface for convenience classes that wrap a Context to provide one-line access to a suite of Services.

GatewayPreprocessor - Class in org.scijava.module.process

The gateway preprocessor automatically populates module inputs that implement Gateway.

GatewayPreprocessor() - Constructor for class org.scijava.module.process.GatewayPreprocessor

GenericUtils - Class in org.scijava.util

Deprecated.

Use Types instead.

get(String) - Method in class org.scijava.AbstractBasicDetails

get(Class<S>) - Method in class org.scijava.AbstractGateway

get(String) - Method in class org.scijava.AbstractGateway

get(String) - Method in interface org.scijava.BasicDetails

Gets the value of the given key, or null if undefined.

get(Object) - Method in interface org.scijava.cache.CacheService

get(Object, Callable<V>) - Method in interface org.scijava.cache.CacheService

get(Object) - Method in class org.scijava.cache.DefaultCacheService

get(String) - Method in class org.scijava.command.CommandModuleItem

get(int) - Method in class org.scijava.display.AbstractDisplay

get(Class<S>) - Method in interface org.scijava.Gateway

Returns an implementation of the requested Service, if it exists in the underlying Context.

get(String) - Method in interface org.scijava.Gateway

Returns an implementation of the Service with the given class name, if it exists in the underlying Context.

get(int) - Static method in enum org.scijava.input.KeyCode

Gets the KeyCode corresponding to the given numeric code, or KeyCode.UNDEFINED if no such code.

get(String) - Static method in enum org.scijava.input.KeyCode

Gets the KeyCode with the given name, or KeyCode.UNDEFINED if no such code.

get() - Method in interface org.scijava.object.LazyObjects

Gets the collection of objects.

get(Class<?>) - Method in class org.scijava.object.ObjectIndex

Gets a list of registered objects compatible with the given type.

get() - Method in class org.scijava.plugin.AbstractWrapperPlugin

get() - Method in interface org.scijava.plugin.WrapperPlugin

Gets the data object currently associated with this plugin.

get(Class<?>, String, String) - Method in class org.scijava.prefs.DefaultPrefService

get(Class<?>, String) - Method in interface org.scijava.prefs.PrefService

Gets a persisted key as a String.

get(Class<?>, String, String) - Method in interface org.scijava.prefs.PrefService

Gets a persisted key as a String.

get(String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.get(Class, String).

get(String, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.get(Class, String, String).

get(String) - Method in class org.scijava.script.AbstractScriptEngine

get(String) - Method in class org.scijava.script.AdaptedScriptEngine

get(int) - Method in class org.scijava.util.BoolArray

get(int) - Method in class org.scijava.util.ByteArray

get(int) - Method in class org.scijava.util.CharArray

get(int) - Method in class org.scijava.util.DoubleArray

get(int) - Method in class org.scijava.util.FloatArray

get(int) - Method in class org.scijava.util.IntArray

get(int) - Method in class org.scijava.util.LastRecentlyUsed

Returns the entry for the given index.

get(int) - Method in class org.scijava.util.LongArray

get(String) - Method in class org.scijava.util.Manifest

get(int) - Method in class org.scijava.util.ObjectArray

get(String) - Static method in class org.scijava.util.Prefs

Deprecated.

get(String, String) - Static method in class org.scijava.util.Prefs

Deprecated.

get(Class<?>, String) - Static method in class org.scijava.util.Prefs

Deprecated.

get(Class<?>, String, String) - Static method in class org.scijava.util.Prefs

Deprecated.

get(int) - Method in class org.scijava.util.ShortArray

get() - Method in class org.scijava.widget.AbstractInputWidget

get() - Method in interface org.scijava.widget.InputWidget

Gets the model object backing this widget.

getAbbreviatedByteLabel(double) - Static method in class org.scijava.util.UnitUtils

getAccelerator() - Method in class org.scijava.display.event.input.KyEvent

Converts the key event into a corresponding accelerator.

getAccelerator() - Method in class org.scijava.MenuEntry

getActiveDisplay() - Method in class org.scijava.display.DefaultDisplayService

getActiveDisplay(Class<D>) - Method in class org.scijava.display.DefaultDisplayService

getActiveDisplay() - Method in interface org.scijava.display.DisplayService

Gets the currently active display (of any Display type).

getActiveDisplay(Class<D>) - Method in interface org.scijava.display.DisplayService

Gets the most recently active display (of the specified Display type).

getActiveTool() - Method in class org.scijava.tool.DefaultToolService

getActiveTool() - Method in interface org.scijava.tool.ToolService

getAll() - Method in class org.scijava.object.ObjectIndex

Gets a list of all registered objects.

getAll() - Method in class org.scijava.util.Manifest

getAllPOMs() - Static method in class org.scijava.util.POM

Gets all available Maven POMs on the class path.

getAllVersions(File, String) - Static method in class org.scijava.util.FileUtils

Lists all versions of a given (possibly versioned) file name.

getAlpha(int, int) - Method in class org.scijava.ui.ARGBPlane

getAlpha() - Method in class org.scijava.util.ColorRGB

getAlpha() - Method in class org.scijava.util.ColorRGBA

getAlwaysActiveTools() - Method in class org.scijava.tool.DefaultToolService

getAlwaysActiveTools() - Method in interface org.scijava.tool.ToolService

getAnnotatedFields(Class<?>, Class<A>) - Static method in class org.scijava.util.ClassUtils

Gets the given class's Fields marked with the annotation of the specified class.

getAnnotatedFields(Class<?>, Class<A>, List<Field>) - Static method in class org.scijava.util.ClassUtils

Gets the given class's Fields marked with the annotation of the specified class.

getAnnotatedMethods(Class<?>, Class<A>) - Static method in class org.scijava.util.ClassUtils

Gets the given class's Methods marked with the annotation of the specified class.

getAnnotatedMethods(Class<?>, Class<A>, List<Method>) - Static method in class org.scijava.util.ClassUtils

Gets the given class's Methods marked with the annotation of the specified class.

getAnnotation() - Method in class org.scijava.plugin.PluginInfo

Gets the associated @Plugin annotation.

getAnnotationFiles() - Method in class org.scijava.annotations.AnnotationCombiner

Scans for annotations files in every resource on the classpath.

getAnnotationFiles() - Method in class org.scijava.util.CombineAnnotations

Deprecated.

Use AnnotationCombiner.getAnnotationFiles() instead.

getApp() - Method in class org.scijava.AbstractGateway

getApp() - Method in interface org.scijava.app.AppService

Gets the foremost application (the one with the highest priority).

getApp(String) - Method in interface org.scijava.app.AppService

Gets an application by name.

getApp(String) - Method in class org.scijava.app.DefaultAppService

getApp() - Method in interface org.scijava.Gateway

getAppEventService() - Method in class org.scijava.platform.DefaultPlatformService

getAppEventService() - Method in interface org.scijava.platform.PlatformService

Deprecated.

Use AppService and App instead.

getApplicationFrame() - Method in interface org.scijava.ui.UserInterface

Gets the main SciJava application frame, or null if not applicable.

getApps() - Method in interface org.scijava.app.AppService

Gets the table of associated applications, keyed by name.

getApps() - Method in class org.scijava.app.DefaultAppService

getArchiverVersion() - Method in class org.scijava.util.Manifest

getARGB(int, int) - Method in class org.scijava.ui.ARGBPlane

getARGB() - Method in class org.scijava.util.ColorRGB

Gets the color as a packed integer, 8 bits per color component.

getArrangement() - Method in interface org.scijava.ui.Arrangeable

getArray() - Method in class org.scijava.util.BoolArray

getArray() - Method in class org.scijava.util.ByteArray

getArray() - Method in class org.scijava.util.CharArray

getArray() - Method in class org.scijava.util.DoubleArray

getArray() - Method in class org.scijava.util.FloatArray

getArray() - Method in class org.scijava.util.IntArray

getArray() - Method in class org.scijava.util.LongArray

getArray() - Method in class org.scijava.util.ObjectArray

getArray() - Method in interface org.scijava.util.PrimitiveArray

Gets the fixed-size array backing this instance.

getArray() - Method in class org.scijava.util.ShortArray

getArrayClass(Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.array(Class) instead.

getArtifactId() - Method in interface org.scijava.app.App

The Maven artifactId of the application.

getArtifactId() - Method in class org.scijava.app.SciJavaApp

getArtifactId() - Method in class org.scijava.util.POM

Gets the POM's artifactId.

getAttribute(String) - Method in class org.scijava.script.AbstractScriptContext

getAttribute(String, int) - Method in class org.scijava.script.AbstractScriptContext

getAttributesScope(String) - Method in class org.scijava.script.AbstractScriptContext

getAutoCompleter() - Method in interface org.scijava.script.ScriptLanguage

Gets a helper object capable of generating autocomplete suggestions for a code fragment.

getAvailableUIs() - Method in class org.scijava.ui.DefaultUIService

getAvailableUIs() - Method in interface org.scijava.ui.UIService

Gets the user interfaces available to the service.

getBase() - Method in class org.scijava.ui.dnd.MIMEType

Gets the MIME type with no parameter list.

getBaseClass() - Method in class org.scijava.object.ObjectIndex

Gets the base class of the items being managed.

getBaseDirectory() - Method in interface org.scijava.app.App

Gets the application's root directory.

getBaseDirectory() - Method in class org.scijava.download.DiskLocationCache

getBaseDirectory(String, Class<?>, String) - Static method in class org.scijava.util.AppUtils

Gets the application root directory.

getBaseDirectory(Class<?>) - Static method in class org.scijava.util.AppUtils

Gets the base file system directory containing the given class file.

getBaseDirectory(Class<?>, String) - Static method in class org.scijava.util.AppUtils

Gets the base file system directory containing the given class file.

getBaseDirectory(File, String) - Static method in class org.scijava.util.AppUtils

Gets the base file system directory from the given known class location.

getBindings(int) - Method in class org.scijava.script.AbstractScriptContext

getBindings(int) - Method in class org.scijava.script.AbstractScriptEngine

getBindings(int) - Method in class org.scijava.script.AdaptedScriptEngine

getBindings() - Method in class org.scijava.script.DefaultScriptInterpreter

getBindings() - Method in interface org.scijava.script.ScriptInterpreter

Returns the Bindings of the associated ScriptEngine at ScriptContext.ENGINE_SCOPE scope.

getBlue(int, int) - Method in class org.scijava.ui.ARGBPlane

getBlue() - Method in class org.scijava.util.ColorRGB

getBoolean(Class<?>, String, boolean) - Method in class org.scijava.prefs.DefaultPrefService

getBoolean(Class<?>, String, boolean) - Method in interface org.scijava.prefs.PrefService

Gets a persisted key as a boolean.

getBoolean(String, boolean) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.getBoolean(Class, String, boolean).

getBoolean(String, boolean) - Static method in class org.scijava.util.Prefs

Deprecated.

getBoolean(Class<?>, String, boolean) - Static method in class org.scijava.util.Prefs

Deprecated.

getBottomRight() - Method in class org.scijava.util.IntRect

Gets the bottom right coordinate of the rectangle.

getBottomRight() - Method in class org.scijava.util.RealRect

Gets the bottom right coordinate of the rectangle.

getBuildJdk() - Method in class org.scijava.util.Manifest

getBuildNumber(Class<?>) - Static method in class org.scijava.util.VersionUtils

Looks up the build number (typically an SCM revision) of the specified class.

getBuiltBy() - Method in class org.scijava.util.Manifest

getButton() - Method in class org.scijava.display.event.input.MsButtonEvent

getByExtension(String) - Method in class org.scijava.script.ScriptLanguageIndex

getByName(String) - Method in class org.scijava.script.ScriptLanguageIndex

getByte(long) - Method in class org.scijava.io.ByteArrayByteBank

getByte(long) - Method in interface org.scijava.io.ByteBank

getByte(long) - Method in class org.scijava.io.nio.ByteBufferByteBank

getByteBank() - Method in class org.scijava.io.location.BytesLocation

Gets the backing ByteBank.

getBytes(long, byte[], int, int) - Method in class org.scijava.io.ByteArrayByteBank

getBytes(long, byte[]) - Method in interface org.scijava.io.ByteBank

getBytes(long, byte[], int, int) - Method in interface org.scijava.io.ByteBank

getBytes(long, byte[], int, int) - Method in class org.scijava.io.nio.ByteBufferByteBank

getCallback() - Method in class org.scijava.command.CommandModuleItem

getCallback() - Method in class org.scijava.module.AbstractModuleItem

getCallback() - Method in class org.scijava.module.DefaultMutableModuleItem

getCallback() - Method in interface org.scijava.module.ModuleItem

Gets the function that is called whenever this item changes.

getCallingClass() - Static method in class org.scijava.log.CallingClassUtils

Inspects the stack trace to return the class that calls this method, but ignores every class annotated with @IgnoreAsCallingClass.

getCallingClass(Class<?>) - Static method in class org.scijava.test.TestUtils

Returns the class of the caller (excluding the specified class).

getCallingCodeLocation(Class<?>) - Static method in class org.scijava.test.TestUtils

Returns the class and the method/line number of the caller (excluding the specified class).

getCallingThread() - Method in class org.scijava.event.SciJavaEvent

Gets the thread that published the event.

getCancelReason() - Method in interface org.scijava.Cancelable

Gets a message describing why the operation was canceled.

getCancelReason() - Method in class org.scijava.command.CommandModule

getCancelReason() - Method in class org.scijava.command.ContextCommand

getCancelReason() - Method in class org.scijava.command.DynamicCommand

getCancelReason() - Method in class org.scijava.command.ModuleCommand

getCancelReason() - Method in class org.scijava.module.process.AbstractPreprocessorPlugin

getCancelReason() - Method in class org.scijava.task.DefaultTask

getCancelReason() - Method in class org.scijava.ui.AbstractInputHarvesterPlugin

getCharacter() - Method in class org.scijava.display.event.input.KyEvent

getChildren() - Method in class org.scijava.menu.ShadowMenu

Gets this node's children, sorted by weight.

getChoices() - Method in class org.scijava.command.CommandModuleItem

getChoices() - Method in class org.scijava.module.AbstractModuleItem

getChoices() - Method in class org.scijava.module.DefaultMutableModuleItem

getChoices() - Method in interface org.scijava.module.ModuleItem

Gets the list of possible values.

getChoices() - Method in class org.scijava.widget.DefaultWidgetModel

getChoices() - Method in interface org.scijava.widget.WidgetModel

Gets the multiple choice list for the module input.

getCIManagementSystem() - Method in class org.scijava.util.POM

Gets the CI management system.

getCIManagementURL() - Method in class org.scijava.util.POM

Gets the CI management URL.

getClass(Type) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.raw(java.lang.reflect.Type)

getClass(Type) - Static method in class org.scijava.util.GenericUtils

Deprecated.

Use Types.raw(java.lang.reflect.Type) instead.

getClasses(Type) - Static method in class org.scijava.util.GenericUtils

Deprecated.

Use Types.raws(java.lang.reflect.Type) instead.

getClassName() - Method in class org.scijava.command.CommandInfo

getClassName() - Method in interface org.scijava.Instantiable

Gets the fully qualified name of the Class of the objects that can be created.

getClassName() - Method in class org.scijava.plugin.PluginInfo

getClosestPresetColor(ColorRGB) - Static method in class org.scijava.util.Colors

Returns the preset color closest to a given color.

getCode() - Method in class org.scijava.display.event.input.KyEvent

getCode() - Method in enum org.scijava.input.KeyCode

Gets the key's numeric code.

getColor(String) - Static method in class org.scijava.util.Colors

Gets the preset color with the given name.

getColumnCount() - Method in class org.scijava.command.CommandModuleItem

getColumnCount() - Method in class org.scijava.module.AbstractModuleItem

getColumnCount() - Method in class org.scijava.module.DefaultMutableModuleItem

getColumnCount() - Method in interface org.scijava.module.ModuleItem

Gets the preferred width of the input field in characters (if applicable).

getCommand() - Method in class org.scijava.command.CommandModule

Gets the command instance handled by this module.

getCommand(Class<C>) - Method in interface org.scijava.command.CommandService

Gets the first available command of the given class, or null if none.

getCommand(String) - Method in interface org.scijava.command.CommandService

Gets the first available command of the given class name, or null if none.

getCommand(Class<C>) - Method in class org.scijava.command.DefaultCommandService

getCommand(String) - Method in class org.scijava.command.DefaultCommandService

getCommands() - Method in interface org.scijava.command.CommandService

Gets the list of all available Commands).

getCommands(List<PluginInfo<CT>>) - Method in interface org.scijava.command.CommandService

Gets the list of Commands corresponding to the given plugins.

getCommands() - Method in class org.scijava.command.DefaultCommandService

getCommands(List<PluginInfo<CT>>) - Method in class org.scijava.command.DefaultCommandService

getCommands() - Method in interface org.scijava.platform.AppEventService

Deprecated.

Tag relevant commands instead: attrs = { @Attr(name = "app-command") }

getCommands() - Method in class org.scijava.platform.DefaultAppEventService

Deprecated.

getCommandService() - Method in interface org.scijava.platform.PlatformService

Deprecated.

Use PlatformService.commandService() instead.

getCommandsOfClass(Class<C>) - Method in interface org.scijava.command.CommandService

Gets the list of commands of the given class.

getCommandsOfClass(String) - Method in interface org.scijava.command.CommandService

Gets the list of commands with the given class name.

getCommandsOfClass(Class<C>) - Method in class org.scijava.command.DefaultCommandService

getCommandsOfClass(String) - Method in class org.scijava.command.DefaultCommandService

getCommandsOfType(Class<CT>) - Method in interface org.scijava.command.CommandService

Gets the list of Commands of the given type.

getCommandsOfType(Class<CT>) - Method in class org.scijava.command.DefaultCommandService

getCompatibleInputClasses(Class<?>) - Method in class org.scijava.convert.AbstractConvertService

getCompatibleInputClasses(Class<?>) - Method in interface org.scijava.convert.ConvertService

getCompatibleInputs(Class<?>) - Method in class org.scijava.convert.AbstractConvertService

getCompatibleInputs(Class<?>) - Method in interface org.scijava.convert.ConvertService

getCompatibleOutputClasses(Class<?>) - Method in class org.scijava.convert.AbstractConvertService

getCompatibleOutputClasses(Class<?>) - Method in interface org.scijava.convert.ConvertService

getComponent() - Method in interface org.scijava.widget.UIComponent

Gets the user interface component housing this object.

getComponentClass(Type) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.raws(java.lang.reflect.Type) and Types.component(java.lang.reflect.Type)

getComponentClass(Type) - Static method in class org.scijava.util.GenericUtils

Deprecated.

Use Types.component(java.lang.reflect.Type) and Types.raw(java.lang.reflect.Type) instead.

getComponentType(Type) - Static method in class org.scijava.util.GenericUtils

Deprecated.

Use Types.component(java.lang.reflect.Type) instead.

getComponentType() - Method in interface org.scijava.widget.UIComponent

Gets the type of the UI component housing the object.

getConsolePane() - Method in interface org.scijava.ui.UserInterface

Gets the main SciJava console pane, or null if not applicable.

getContext() - Method in class org.scijava.AbstractContextual

getContext() - Method in class org.scijava.command.CommandModule

getContext() - Method in class org.scijava.command.DynamicCommand

getContext() - Method in class org.scijava.command.ModuleCommand

getContext() - Method in interface org.scijava.Contextual

Gets the application context to which the object belongs, or null if Contextual.setContext(Context) has not yet been called on this object.

getContext() - Method in class org.scijava.script.AbstractScriptEngine

getContext() - Method in class org.scijava.script.AdaptedScriptEngine

getContext() - Method in class org.scijava.script.ScriptInfo

getContext() - Method in class org.scijava.script.ScriptModule

getContext() - Method in class org.scijava.service.AbstractService

getCreatedBy() - Method in class org.scijava.util.Manifest

getCursor() - Method in interface org.scijava.tool.Tool

The tool's mouse pointer.

getData() - Method in class org.scijava.io.event.IOEvent

Gets the data for which I/O took place.

getData() - Method in class org.scijava.ui.ARGBPlane

getData(MIMEType) - Method in class org.scijava.ui.dnd.DefaultDragAndDropData

getData(MIMEType) - Method in interface org.scijava.ui.dnd.DragAndDropData

Gets the data with respect to the given MIME type.

getData(Class<T>) - Method in interface org.scijava.ui.dnd.DragAndDropData

Gets the data as an object of the given Java class.

getData() - Method in class org.scijava.ui.dnd.event.DragAndDropEvent

Gets the drag-and-drop data.

getDataHandle() - Method in class org.scijava.io.handle.DataHandleInputStream

getDataType() - Method in interface org.scijava.io.IOPlugin

The type of data opened and/or saved by the plugin.

getDataType() - Method in class org.scijava.script.io.ScriptIOPlugin

getDataType() - Method in class org.scijava.text.io.TextIOPlugin

getDefaultUI() - Method in class org.scijava.ui.DefaultUIService

getDefaultUI() - Method in interface org.scijava.ui.UIService

Gets the default user interface.

getDefaultValue() - Method in class org.scijava.command.CommandModuleItem

getDefaultValue() - Method in class org.scijava.module.AbstractModuleItem

getDefaultValue(ModuleItem<T>) - Method in class org.scijava.module.DefaultModuleService

getDefaultValue() - Method in class org.scijava.module.DefaultMutableModuleItem

getDefaultValue() - Method in interface org.scijava.module.ModuleItem

Gets the default value.

getDefaultValue(ModuleItem<T>) - Method in interface org.scijava.module.ModuleService

Gets the default value of the given ModuleItem.

getDefaultValue(Number, Number, Class<?>) - Static method in class org.scijava.util.NumberUtils

getDelegateClass() - Method in class org.scijava.module.AbstractModuleItem

getDelegateClassName() - Method in class org.scijava.command.CommandInfo

getDelegateClassName() - Method in interface org.scijava.module.ModuleInfo

Gets the fully qualified name of the class containing the module's actual implementation.

getDelegateClassName() - Method in interface org.scijava.module.MutableModuleInfo

getDelegateClassName() - Method in class org.scijava.script.ScriptInfo

getDelegateObject() - Method in class org.scijava.command.CommandModule

getDelegateObject() - Method in class org.scijava.module.AbstractModule

getDelegateObject() - Method in interface org.scijava.module.Module

Gets the object containing the module's actual implementation.

getDescription() - Method in class org.scijava.AbstractBasicDetails

getDescription() - Method in interface org.scijava.BasicDetails

Gets a string describing the object.

getDescription() - Method in class org.scijava.command.CommandModuleItem

getDescription() - Method in class org.scijava.command.DynamicCommandInfo

getDescription() - Method in class org.scijava.module.DefaultMutableModuleItem

getDescription() - Method in interface org.scijava.tool.Tool

Returns the text the tool provides when mouse hovers over tool

getDescriptor() - Method in class org.scijava.io.event.IOEvent

Gets the data descriptor (source or destination).

getDesktop() - Method in interface org.scijava.ui.UserInterface

Gets the desktop, for use with multi-document interfaces (MDI), or null if not applicable.

getDestination() - Method in class org.scijava.io.event.DataSavedEvent

Gets the destination to which data was saved.

getDisplay(String) - Method in class org.scijava.display.DefaultDisplayService

getDisplay(String) - Method in interface org.scijava.display.DisplayService

Gets a display by its name.

getDisplay() - Method in class org.scijava.display.event.DisplayEvent

getDisplay() - Method in class org.scijava.input.DefaultInputService

getDisplay() - Method in interface org.scijava.input.InputService

Gets the display associated with the last observed mouse cursor.

getDisplay() - Method in class org.scijava.ui.viewer.AbstractDisplayViewer

getDisplay() - Method in interface org.scijava.ui.viewer.DisplayPanel

Gets the panel's associated display.

getDisplay() - Method in interface org.scijava.ui.viewer.DisplayViewer

Gets the display being viewed.

getDisplay() - Method in class org.scijava.ui.viewer.text.AbstractTextDisplayViewer

getDisplay() - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel

getDisplay() - Method in interface org.scijava.ui.viewer.text.TextDisplayViewer

getDisplayPlugin(Class<D>) - Method in class org.scijava.display.DefaultDisplayService

getDisplayPlugin(String) - Method in class org.scijava.display.DefaultDisplayService

getDisplayPlugin(Class<D>) - Method in interface org.scijava.display.DisplayService

Gets the display plugin of the given class, or null if none.

getDisplayPlugin(String) - Method in interface org.scijava.display.DisplayService

Gets the display plugin of the given class name, or null if none.

getDisplayPlugins() - Method in class org.scijava.display.DefaultDisplayService

getDisplayPlugins() - Method in interface org.scijava.display.DisplayService

Gets the list of known display plugins.

getDisplayPluginsOfType(Class<D>) - Method in class org.scijava.display.DefaultDisplayService

getDisplayPluginsOfType(Class<DT>) - Method in interface org.scijava.display.DisplayService

Gets the list of display plugins of the given type (e.g., ImageDisplay.class).

getDisplays() - Method in class org.scijava.display.DefaultDisplayService

getDisplays(Object) - Method in class org.scijava.display.DefaultDisplayService

getDisplays() - Method in interface org.scijava.display.DisplayService

Gets a list of all available displays.

getDisplays(Object) - Method in interface org.scijava.display.DisplayService

Gets a list of displays currently visualizing the given object.

getDisplaysOfType(Class<D>) - Method in class org.scijava.display.DefaultDisplayService

getDisplaysOfType(Class<DT>) - Method in interface org.scijava.display.DisplayService

Gets a list of all available displays of the given type (e.g., ImageDisplay.class).

getDisplayViewer(Display<?>) - Method in class org.scijava.ui.DefaultUIService

getDisplayViewer(Display<?>) - Method in interface org.scijava.ui.UIService

Gets the UI widget being used to visualize the given Display.

getDocument() - Method in class org.scijava.util.XML

Gets the XML's DOM representation.

getDouble(Class<?>, String, double) - Method in class org.scijava.prefs.DefaultPrefService

getDouble(Class<?>, String, double) - Method in interface org.scijava.prefs.PrefService

Gets a persisted key as a double.

getDouble(String, double) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.getDouble(Class, String, double).

getDouble(String, double) - Static method in class org.scijava.util.Prefs

Deprecated.

getDouble(Class<?>, String, double) - Static method in class org.scijava.util.Prefs

Deprecated.

getEncoding() - Method in class org.scijava.io.handle.AbstractDataHandle

getEncoding() - Method in interface org.scijava.io.handle.DataHandle

Gets the native encoding of the stream.

getEngine() - Method in class org.scijava.script.DefaultScriptInterpreter

getEngine() - Method in interface org.scijava.script.ScriptInterpreter

Returns the associated ScriptEngine.

getEngine() - Method in class org.scijava.script.ScriptModule

Gets the script engine used to execute the script.

getEngineName() - Method in class org.scijava.script.AbstractScriptLanguage

getEngineName() - Method in class org.scijava.script.AdaptedScriptLanguage

getEngineVersion() - Method in class org.scijava.script.AdaptedScriptLanguage

getEngineVersion() - Method in interface org.scijava.script.ScriptLanguage

getErrorWriter() - Method in class org.scijava.script.AbstractScriptContext

getEventClass() - Method in interface org.scijava.event.EventSubscriber

getEventService() - Method in interface org.scijava.command.CommandService

Deprecated.

Use CommandService.eventService() instead.

getEventService() - Method in interface org.scijava.display.DisplayService

Deprecated.

Use DisplayService.eventService() instead.

getEventService() - Method in interface org.scijava.input.InputService

Deprecated.

Use InputService.eventService() instead.

getEventService() - Method in interface org.scijava.object.ObjectService

Deprecated.

Use ObjectService.eventService() instead.

getEventService() - Method in interface org.scijava.platform.PlatformService

Deprecated.

Use PlatformService.eventService() instead.

getEventString() - Method in class org.scijava.event.EventDetails

getEventType() - Method in class org.scijava.event.EventDetails

getExceptions() - Method in class org.scijava.plugin.PluginIndex

Gets the exceptions which occurred during the last invocation of PluginIndex.discover().

getExecutorService() - Method in class org.scijava.thread.DefaultThreadService

getExecutorService() - Method in interface org.scijava.thread.ThreadService

Gets the ExecutorService object used when ThreadService.run(java.util.concurrent.Callable<V>) is called.

getExtension(File) - Static method in class org.scijava.util.FileUtils

Extracts the file extension from a file.

getExtension(String) - Static method in class org.scijava.util.FileUtils

Extracts the file extension from a file path.

getExtensions() - Method in class org.scijava.script.AdaptedScriptLanguage

getExtensions() - Method in interface org.scijava.script.ScriptLanguage

getExtensions() - Method in interface org.scijava.text.TextFormat

Gets the list of filename extensions for text in this format.

getFactory() - Method in class org.scijava.script.AbstractScriptEngine

getFactory() - Method in class org.scijava.script.AdaptedScriptEngine

getField() - Method in class org.scijava.command.CommandModuleItem

getField(String, String) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.field(java.lang.Class<?>, java.lang.String) instead.

getField(Class<?>, String) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.field(java.lang.Class<?>, java.lang.String) instead.

getFieldClasses(Field, Class<?>) - Static method in class org.scijava.util.GenericUtils

Deprecated.

Use Types.fieldType(Field, Class) and Types.raws(java.lang.reflect.Type) instead.

getFieldName(Class<?>, int) - Static method in class org.scijava.util.DebugUtils

This method uses reflection to scan the values of the given class's static fields, returning the first matching field's name.

getFieldType(Field, Class<?>) - Static method in class org.scijava.util.GenericUtils

Deprecated.

Use Types.fieldType(Field, Class) instead.

getFile() - Method in class org.scijava.io.location.FileLocation

Gets the associated File.

getFileExtensions(ScriptLanguage) - Method in class org.scijava.script.ScriptLanguageIndex

getFiles() - Method in class org.scijava.platform.event.AppOpenFilesEvent

getFloat(Class<?>, String, float) - Method in class org.scijava.prefs.DefaultPrefService

getFloat(Class<?>, String, float) - Method in interface org.scijava.prefs.PrefService

Gets a persisted key as a float.

getFloat(String, float) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.getFloat(Class, String, float).

getFloat(String, float) - Static method in class org.scijava.util.Prefs

Deprecated.

getFloat(Class<?>, String, float) - Static method in class org.scijava.util.Prefs

Deprecated.

getGenericType() - Method in class org.scijava.command.CommandModuleItem

getGenericType() - Method in class org.scijava.module.AbstractModuleItem

getGenericType() - Method in class org.scijava.module.DefaultMutableModuleItem

getGenericType() - Method in interface org.scijava.module.ModuleItem

Gets the type of the item, including Java generic parameters.

getGenericType(Field, Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.fieldType(Field, Class) instead.

getGreen(int, int) - Method in class org.scijava.ui.ARGBPlane

getGreen() - Method in class org.scijava.util.ColorRGB

getGroupId() - Method in interface org.scijava.app.App

The Maven groupId of the application.

getGroupId() - Method in class org.scijava.app.SciJavaApp

getGroupId() - Method in class org.scijava.util.POM

Gets the POM's groupId.

getHandler(Object, Class<?>) - Method in class org.scijava.convert.AbstractConvertService

getHandler(Class<?>, Class<?>) - Method in class org.scijava.convert.AbstractConvertService

getHandler(Object, Type) - Method in class org.scijava.convert.AbstractConvertService

getHandler(Class<?>, Type) - Method in class org.scijava.convert.AbstractConvertService

getHandler(Object, Class<?>) - Method in interface org.scijava.convert.ConvertService

getHandler(Object, Type) - Method in interface org.scijava.convert.ConvertService

getHandler(Class<?>, Class<?>) - Method in interface org.scijava.convert.ConvertService

Deprecated.

Use ConvertService.getHandler(Object, Class)

getHandler(Class<?>, Type) - Method in interface org.scijava.convert.ConvertService

Deprecated.

Use ConvertService.getHandler(Object, Type)

getHandler(DT) - Method in interface org.scijava.plugin.HandlerService

Gets the most appropriate handler for the given data object, or null if no handler supports it.

getHandler(File) - Method in interface org.scijava.text.TextService

Gets the text format which best handles the given file.

getHandler(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService

Gets the drag-and-drop handler which will be used to handle the given DragAndDropData dragged onto the specified display.

getHandler(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService

Gets the drag-and-drop handler which will be used to handle the given object dragged onto the specified display.

getHeader() - Method in interface org.scijava.script.ScriptHeader

getHeader(ScriptLanguage) - Method in interface org.scijava.script.ScriptHeaderService

Searches for all ScriptHeaders capable of handling the given ScriptLanguage and combines the result of their ScriptHeader.getHeader() output to a single string.

getHeight() - Method in class org.scijava.ui.ARGBPlane

getIconPath() - Method in class org.scijava.AbstractUIDetails

getIconPath() - Method in class org.scijava.command.DynamicCommandInfo

getIconPath() - Method in class org.scijava.MenuEntry

getIconPath() - Method in interface org.scijava.UIDetails

Gets the resource path to an icon representing the object.

getIconRectangleHeight() - Method in interface org.scijava.tool.IconDrawer

getIconRectangleWidth() - Method in interface org.scijava.tool.IconDrawer

getIconURL() - Method in class org.scijava.command.CommandInfo

getIconURL() - Method in class org.scijava.menu.ShadowMenu

Gets the URL of the icon associated with this node's MenuEntry.

getIconURL() - Method in class org.scijava.plugin.PluginInfo

Gets the URL corresponding to the icon resource path.

getIdentifier() - Method in class org.scijava.command.CommandInfo

getIdentifier() - Method in interface org.scijava.Identifiable

Gets a string intended to function as an identifier for the object.

getIdentifier() - Method in interface org.scijava.module.ModuleInfo

getIdentifier() - Method in class org.scijava.plugin.PluginInfo

getIdentifier() - Method in interface org.scijava.plugin.RichPlugin

getIdentifier() - Method in class org.scijava.script.ScriptInfo

getImplementationBuild() - Method in class org.scijava.util.Manifest

getImplementationDate() - Method in class org.scijava.util.Manifest

getImplementationTitle() - Method in class org.scijava.util.Manifest

getImplementationVendor() - Method in class org.scijava.util.Manifest

getImplementationVendorId() - Method in class org.scijava.util.Manifest

getImplementationVersion() - Method in class org.scijava.util.Manifest

getIndex() - Method in class org.scijava.module.DefaultModuleService

getIndex() - Method in interface org.scijava.module.ModuleService

Gets the index of available modules.

getIndex() - Method in class org.scijava.object.DefaultObjectService

getIndex() - Method in interface org.scijava.object.ObjectService

Gets the index of available objects.

getIndex() - Method in class org.scijava.plugin.DefaultPluginService

getIndex() - Method in interface org.scijava.plugin.PluginService

Gets the index of available plugins.

getIndex() - Method in class org.scijava.script.DefaultScriptService

getIndex() - Method in interface org.scijava.script.ScriptService

Gets the index of available scripting languages.

getInfo(boolean) - Method in class org.scijava.AbstractGateway

getInfo(boolean) - Method in interface org.scijava.app.App

Gets a string with information about the application.

getInfo() - Method in class org.scijava.command.CommandModule

getInfo() - Method in class org.scijava.command.DynamicCommand

getInfo() - Method in class org.scijava.command.ModuleCommand

getInfo(boolean) - Method in interface org.scijava.Gateway

getInfo() - Method in class org.scijava.module.AbstractModuleItem

getInfo() - Method in class org.scijava.module.DefaultMutableModule

getInfo() - Method in interface org.scijava.module.Module

Gets metadata about this module.

getInfo() - Method in interface org.scijava.module.ModuleItem

Gets the ModuleInfo to which this item belongs.

getInfo() - Method in interface org.scijava.module.MutableModule

getInfo() - Method in class org.scijava.plugin.AbstractRichPlugin

getInfo() - Method in interface org.scijava.plugin.HasPluginInfo

Gets the PluginInfo metadata associated with the object.

getInfo() - Method in class org.scijava.script.ScriptModule

getInitializer() - Method in class org.scijava.command.CommandInfo

getInitializer() - Method in class org.scijava.command.CommandModuleItem

getInitializer() - Method in class org.scijava.command.DynamicCommandInfo

getInitializer() - Method in class org.scijava.module.AbstractModuleItem

getInitializer() - Method in class org.scijava.module.DefaultMutableModuleItem

getInitializer() - Method in interface org.scijava.module.ModuleInfo

Gets the function that is called to initialize the module's values.

getInitializer() - Method in interface org.scijava.module.ModuleItem

Gets the function that is called to initialize the item's value.

getInput(String) - Method in class org.scijava.command.CommandInfo

getInput(String, Class<T>) - Method in class org.scijava.command.CommandInfo

getInput(String) - Method in class org.scijava.command.CommandModule

getInput(String) - Method in class org.scijava.command.DynamicCommand

getInput(String) - Method in class org.scijava.module.AbstractModule

getInput(String) - Method in class org.scijava.module.AbstractModuleInfo

getInput(String, Class<T>) - Method in class org.scijava.module.AbstractModuleInfo

getInput(String) - Method in interface org.scijava.module.Module

Gets the value of the input with the given name.

getInput(String) - Method in interface org.scijava.module.ModuleInfo

Gets the input item with the given name.

getInput(String, Class<T>) - Method in interface org.scijava.module.ModuleInfo

Gets the input item with the given name and type.

getInputField(String) - Method in class org.scijava.command.DynamicCommandInfo

Gets the Field corresponding to the given @Parameter annotated module input, or null if the input does not exist or was not declared using the @Parameter mechanism.

getInputs() - Method in class org.scijava.module.AbstractModule

getInputs() - Method in interface org.scijava.module.Module

Gets a table of input values.

getInputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayUnwrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayWrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayUnwrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayWrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayUnwrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayWrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayUnwrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayWrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayUnwrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayWrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayUnwrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayWrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayUnwrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayWrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayUnwrapper

getInputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayWrapper

getInputType() - Method in class org.scijava.convert.CastingConverter

getInputType() - Method in interface org.scijava.convert.Converter

getInputType() - Method in class org.scijava.convert.DefaultConverter

getInputType() - Method in class org.scijava.convert.FileListConverters.FileArrayToStringConverter

getInputType() - Method in class org.scijava.convert.FileListConverters.FileToStringConverter

getInputType() - Method in class org.scijava.convert.FileListConverters.StringToFileArrayConverter

getInputType() - Method in class org.scijava.convert.FileListConverters.StringToFileConverter

getInputType() - Method in class org.scijava.convert.NullConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.BigIntegerToBigDecimalConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToBigDecimalConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToBigIntegerConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToDoubleConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToFloatConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToIntegerConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToLongConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToShortConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.DoubleToBigDecimalConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.FloatToBigDecimalConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.FloatToDoubleConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToBigDecimalConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToBigIntegerConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToDoubleConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToLongConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.LongToBigDecimalConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.LongToBigIntegerConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToBigDecimalConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToBigIntegerConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToDoubleConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToFloatConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToIntegerConverter

getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToLongConverter

getInstance(Class<P>) - Method in class org.scijava.plugin.AbstractSingletonService

getInstance(Class<P>) - Method in interface org.scijava.plugin.SingletonService

Gets the singleton plugin instance of the given class.

getInstances() - Method in class org.scijava.options.DefaultOptionsService

getInstances() - Method in class org.scijava.plugin.AbstractSingletonService

getInstances() - Method in interface org.scijava.plugin.HandlerService

Gets the list of handlers.

getInstances() - Method in interface org.scijava.plugin.SingletonService

Gets the list of plugin instances.

getInstances() - Method in interface org.scijava.text.TextService

Gets the list of available text formats.

getInstances() - Method in interface org.scijava.ui.dnd.DragAndDropService

Gets the list of available drag-and-drop handlers, which are used to perform drag-and-drop operations.

getInt(Class<?>, String, int) - Method in class org.scijava.prefs.DefaultPrefService

getInt(Class<?>, String, int) - Method in interface org.scijava.prefs.PrefService

Gets a persisted key as an int.

getInt(String, int) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.getInt(Class, String, int).

getInt(String, int) - Static method in class org.scijava.util.Prefs

Deprecated.

getInt(Class<?>, String, int) - Static method in class org.scijava.util.Prefs

Deprecated.

getInterpretedLanguages() - Method in class org.scijava.script.ScriptREPL

Gets the list of languages compatible with the REPL.

getInterpreter() - Method in class org.scijava.script.ScriptREPL

Gets the script interpreter for the currently active language.

getIntX() - Method in class org.scijava.util.RealCoords

getIntY() - Method in class org.scijava.util.RealCoords

getIOType() - Method in class org.scijava.command.CommandModuleItem

getIOType() - Method in class org.scijava.module.AbstractModuleItem

getIOType() - Method in class org.scijava.module.DefaultMutableModuleItem

getIOType() - Method in interface org.scijava.module.ModuleItem

Gets the input/output type of the item.

getIssueManagementSystem() - Method in class org.scijava.util.POM

Gets the issue management system.

getIssueManagementURL() - Method in class org.scijava.util.POM

Gets the issue management URL.

getItem() - Method in class org.scijava.widget.DefaultWidgetModel

getItem() - Method in interface org.scijava.widget.WidgetModel

Gets the module input's associated item descriptor.

getItems() - Method in class org.scijava.object.event.ListEvent

Gets the list of affected items.

getIterable(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

getIterable(Class<?>, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.getList(Class, String).

getIterable(String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

User PrefService.getList(Class, String).

getKeyCode() - Method in class org.scijava.input.Accelerator

getLabel() - Method in class org.scijava.AbstractBasicDetails

getLabel() - Method in interface org.scijava.BasicDetails

Gets the name to appear in a UI, if applicable.

getLabel() - Method in class org.scijava.command.CommandModuleItem

getLabel() - Method in class org.scijava.command.DynamicCommandInfo

getLabel() - Method in class org.scijava.module.DefaultMutableModuleItem

getLanguage() - Method in class org.scijava.script.DefaultScriptInterpreter

getLanguage() - Method in class org.scijava.script.ScriptInfo

Gets the scripting language of the script.

getLanguage() - Method in interface org.scijava.script.ScriptInterpreter

Returns the associated ScriptLanguage.

getLanguage() - Method in class org.scijava.script.ScriptModule

Deprecated.

Use ScriptInfo.getLanguage() instead.

getLanguageByExtension(String) - Method in interface org.scijava.script.ScriptService

Gets the scripting language that handles the given file extension.

getLanguageByName(String) - Method in interface org.scijava.script.ScriptService

Gets the scripting language with the given name.

getLanguageName() - Method in class org.scijava.script.AbstractScriptLanguage

getLanguageName() - Method in class org.scijava.script.AdaptedScriptLanguage

getLanguages() - Method in interface org.scijava.script.ScriptService

Gets the available scripting languages.

getLanguageVersion() - Method in class org.scijava.script.AdaptedScriptLanguage

getLanguageVersion() - Method in interface org.scijava.script.ScriptLanguage

getLeaf() - Method in class org.scijava.MenuPath

Gets the final element of the menu path.

getLevel() - Method in class org.scijava.display.event.DisplayUpdatedEvent

getLevel() - Method in class org.scijava.log.AbstractLogService

getLevel() - Method in class org.scijava.log.DefaultLogger

getLevel() - Method in interface org.scijava.log.Logger

Returns the log level of this logger.

getList(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService

getList(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

getList(String, String) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

getList(Class<?>, String) - Method in interface org.scijava.prefs.PrefService

Gets a persisted key as a List.

getList(Class<?>) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.getList(Class, String).

getList(String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.getList(Class, String).

getList(String, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.getList(Class, String).

getList(String) - Static method in class org.scijava.util.Prefs

Deprecated.

Gets a List from the preferences.

getList(Preferences, String) - Static method in class org.scijava.util.Prefs

Deprecated.

getList(Preferences) - Static method in class org.scijava.util.Prefs

Deprecated.

Gets a List from the preferences.

getLocation() - Method in interface org.scijava.Locatable

Gets the URL string defining the object's location.

getLocation() - Method in interface org.scijava.module.ModuleInfo

getLocation() - Method in class org.scijava.plugin.PluginInfo

getLocation() - Method in class org.scijava.script.ScriptInfo

getLocation(String) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.location(java.lang.Class<?>) and Types.load(java.lang.String) instead.

getLocation(String, ClassLoader) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.location(java.lang.Class<?>) and Types.load(java.lang.String) instead.

getLocation(Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.location(java.lang.Class<?>) and Types.load(java.lang.String) instead.

getLocationX() - Method in interface org.scijava.ui.ApplicationFrame

Gets the X coordinate of the application frame's top left corner.

getLocationY() - Method in interface org.scijava.ui.ApplicationFrame

Gets the Y coordinate of the application frame's top left corner.

getLong(Class<?>, String, long) - Method in class org.scijava.prefs.DefaultPrefService

getLong(Class<?>, String, long) - Method in interface org.scijava.prefs.PrefService

Gets a persisted key as a long.

getLong(String, long) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.getLong(Class, String, long).

getLong(String, long) - Static method in class org.scijava.util.Prefs

Deprecated.

getLong(Class<?>, String, long) - Static method in class org.scijava.util.Prefs

Deprecated.

getLongX() - Method in class org.scijava.util.RealCoords

getLongY() - Method in class org.scijava.util.RealCoords

getMainClass() - Static method in class org.scijava.util.AppUtils

Gets the class whose main method launched the application.

getMainClassName() - Static method in class org.scijava.util.DebugUtils

Get the class whose main method launched the application.

getMains() - Method in class org.scijava.main.DefaultMainService

getMains() - Method in interface org.scijava.main.MainService

Gets the registered main classes to execute.

getManifest() - Method in class org.scijava.app.AbstractApp

getManifest() - Method in interface org.scijava.app.App

Gets the manifest containing metadata about the application.

getManifest(Class<?>) - Static method in class org.scijava.util.Manifest

Gets the JAR manifest associated with the given class.

getManifest(XML) - Static method in class org.scijava.util.Manifest

Gets the JAR manifest associated with the given XML document.

getManifest(File) - Static method in class org.scijava.util.Manifest

Gets the JAR manifest associated with the given JAR file.

getManifestVersion() - Method in class org.scijava.util.Manifest

getMap(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService

getMap(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

getMap(String, String) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

getMap(Class<?>, String) - Method in interface org.scijava.prefs.PrefService

Gets a persisted key as a Map.

getMap(Class<?>) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.getMap(Class, String).

getMap(String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.getMap(Class, String).

getMap(String, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.getMap(Class, String).

getMap(String) - Static method in class org.scijava.util.Prefs

Deprecated.

Gets a Map from the preferences.

getMap(Preferences, String) - Static method in class org.scijava.util.Prefs

Deprecated.

getMap(Preferences) - Static method in class org.scijava.util.Prefs

Deprecated.

Gets a Map from the preferences.

getMatches() - Method in class org.scijava.script.AutoCompletionResult

getMax() - Method in class org.scijava.widget.DefaultWidgetModel

getMax() - Method in interface org.scijava.widget.WidgetModel

Gets the maximum value for the module input.

getMaxBufferSize() - Method in class org.scijava.io.ByteArrayByteBank

getMaxBufferSize() - Method in interface org.scijava.io.ByteBank

getMaxBufferSize() - Method in class org.scijava.io.nio.ByteBufferByteBank

getMaximumGrowth() - Method in class org.scijava.util.AbstractPrimitiveArray

getMaximumGrowth() - Method in interface org.scijava.util.PrimitiveArray

Gets the maximal step size by which to grow the fixed-size array when running out of space.

getMaximumNumber(Class<?>) - Static method in class org.scijava.util.NumberUtils

getMaximumValue() - Method in class org.scijava.command.CommandModuleItem

getMaximumValue() - Method in class org.scijava.module.AbstractModuleItem

getMaximumValue() - Method in class org.scijava.module.DefaultMutableModuleItem

getMaximumValue() - Method in interface org.scijava.module.ModuleItem

Gets the maximum allowed value (if applicable).

getMenu(String) - Method in class org.scijava.menu.DefaultMenuService

getMenu() - Method in interface org.scijava.menu.MenuService

Gets the root node of the application menu structure.

getMenu(String) - Method in interface org.scijava.menu.MenuService

Gets the root node of a menu structure.

getMenu(MenuPath) - Method in class org.scijava.menu.ShadowMenu

Gets the node with the given menu path (relative to this node), or null if no such menu node.

getMenu(String) - Method in class org.scijava.menu.ShadowMenu

getMenuDepth() - Method in class org.scijava.menu.ShadowMenu

Gets how deep into the menu structure this node is.

getMenuEntry() - Method in class org.scijava.menu.ShadowMenu

Gets the menu entry corresponding to this node.

getMenuPath() - Method in class org.scijava.AbstractUIDetails

getMenuPath() - Method in class org.scijava.command.DynamicCommandInfo

getMenuPath() - Method in interface org.scijava.UIDetails

Gets the path to the object's suggested position in the menu structure.

getMenuPrefix(File) - Method in class org.scijava.script.DefaultScriptService

getMenuPrefix(File) - Method in interface org.scijava.script.ScriptService

Gets the menu path prefix for the given script directory, or null if none.

getMenuRoot() - Method in class org.scijava.AbstractUIDetails

getMenuRoot() - Method in class org.scijava.command.DynamicCommandInfo

getMenuRoot() - Method in interface org.scijava.UIDetails

Gets the name of the menu structure to which the object belongs.

getMenus() - Method in class org.scijava.platform.event.AppMenusCreatedEvent

getMenuString() - Method in class org.scijava.MenuPath

Gets the menu path as a string.

getMenuString(boolean) - Method in class org.scijava.MenuPath

Gets the menu path as a string, with or without the final element.

getMethodCallSyntax(String, String, String...) - Method in class org.scijava.script.AdaptedScriptLanguage

getMethodCallSyntax(String, String, String...) - Method in interface org.scijava.script.ScriptLanguage

getMethodReturnClasses(Method, Class<?>) - Static method in class org.scijava.util.GenericUtils

Deprecated.

Use Types.methodReturnType(java.lang.reflect.Method, java.lang.Class<?>) and Types.raws(java.lang.reflect.Type) instead.

getMethodReturnType(Method, Class<?>) - Static method in class org.scijava.util.GenericUtils

Deprecated.

Use Types.methodReturnType(java.lang.reflect.Method, java.lang.Class<?>) instead.

getMillis() - Method in class org.scijava.util.TunePlayer

Gets the current note length in milliseconds, by the current tempo.

getMIMEType(Class<?>) - Method in interface org.scijava.ui.dnd.DragAndDropData

Gets the best supported MIME type matching the given Java class.

getMimeTypes() - Method in class org.scijava.script.AdaptedScriptLanguage

getMimeTypes() - Method in interface org.scijava.script.ScriptLanguage

getMIMETypes() - Method in class org.scijava.ui.dnd.DefaultDragAndDropData

getMIMETypes() - Method in interface org.scijava.ui.dnd.DragAndDropData

Gets the list of supported MIME types.

getMin() - Method in class org.scijava.widget.DefaultWidgetModel

getMin() - Method in interface org.scijava.widget.WidgetModel

Gets the minimum value for the module input.

getMinimumNumber(Class<?>) - Static method in class org.scijava.util.NumberUtils

getMinimumValue() - Method in class org.scijava.command.CommandModuleItem

getMinimumValue() - Method in class org.scijava.module.AbstractModuleItem

getMinimumValue() - Method in class org.scijava.module.DefaultMutableModuleItem

getMinimumValue() - Method in interface org.scijava.module.ModuleItem

Gets the minimum allowed value (if applicable).

getMnemonic() - Method in class org.scijava.MenuEntry

getMode() - Method in class org.scijava.io.handle.FileHandle

getModifiedTime(File) - Static method in class org.scijava.util.FileUtils

Gets the Date of the file's last modification.

getModifiers() - Method in class org.scijava.display.event.input.InputEvent

getModifiers() - Method in class org.scijava.input.Accelerator

getModifiers() - Method in class org.scijava.input.DefaultInputService

getModifiers() - Method in interface org.scijava.input.InputService

getModule() - Method in class org.scijava.module.event.ModuleEvent

getModule() - Method in class org.scijava.widget.DefaultWidgetModel

getModule() - Method in interface org.scijava.widget.WidgetModel

Gets the module's associated module instance.

getModuleById(String) - Method in class org.scijava.module.DefaultModuleService

getModuleById(String) - Method in interface org.scijava.module.ModuleService

Gets the module with the given identifier string.

getModuleClass() - Method in class org.scijava.module.DefaultMutableModuleInfo

getModuleClass() - Method in interface org.scijava.module.MutableModuleInfo

Gets the module class described by this ModuleInfo.

getModuleForAccelerator(Accelerator) - Method in class org.scijava.module.DefaultModuleService

getModuleForAccelerator(Accelerator) - Method in interface org.scijava.module.ModuleService

Gets the module for a given keyboard shortcut.

getModuleInfo() - Method in class org.scijava.menu.ShadowMenu

Gets the module linked to this node, or null if node is not a leaf.

getModules() - Method in class org.scijava.module.DefaultModuleService

getModules() - Method in interface org.scijava.module.ModuleService

Gets the list of available modules.

getModuleService() - Method in interface org.scijava.command.CommandService

Deprecated.

Use CommandService.moduleService() instead.

getMutableInput(String, Class<T>) - Method in class org.scijava.command.DynamicCommandInfo

Gets the mutable input with the given name and type.

getMutableOutput(String, Class<T>) - Method in class org.scijava.command.DynamicCommandInfo

Gets the mutable output with the given name and type.

getName() - Method in class org.scijava.AbstractBasicDetails

getName() - Method in class org.scijava.command.CommandModuleItem

getName() - Method in class org.scijava.command.DynamicCommandInfo

getName() - Method in class org.scijava.display.AbstractDisplay

getName() - Method in class org.scijava.io.location.FileLocation

getName() - Method in interface org.scijava.io.location.Location

Gets a (typically short) name expressing this location.

getName() - Method in interface org.scijava.log.Logger

Returns the name of this logger.

getName() - Method in class org.scijava.menu.ShadowMenu

getName() - Method in class org.scijava.MenuEntry

getName() - Method in class org.scijava.module.DefaultMutableModuleItem

getName() - Method in interface org.scijava.Named

Gets the name of the object.

getName() - Method in class org.scijava.task.DefaultTask

getName(ColorRGB) - Static method in class org.scijava.util.Colors

Gets the name of the preset matching the given color.

getNames() - Method in class org.scijava.script.AdaptedScriptLanguage

getNames() - Method in interface org.scijava.script.ScriptLanguage

getNextService(Class<S>, Class<? extends S>) - Method in class org.scijava.service.ServiceIndex

Gets the highest priority service compatible with class c, which is lower priority than the ref service.

getNonprimitiveType(Class<T>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use Types.box(Class)

getNonprimitiveType(Class<T>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.box(java.lang.Class<T>)

getNoteLength() - Method in class org.scijava.util.TunePlayer

getNullValue(Class<T>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

use Types.nullValue(Class)

getNullValue(Class<T>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

Use Types.nullValue(java.lang.Class<T>) instead.

getNumClicks() - Method in class org.scijava.display.event.input.MsButtonEvent

getObject() - Method in class org.scijava.display.event.DisplayCreatedEvent

getObject() - Method in class org.scijava.display.event.DisplayDeletedEvent

getObject() - Method in class org.scijava.object.event.ObjectEvent

getObjectPool() - Method in class org.scijava.widget.DefaultWidgetModel

getObjectPool() - Method in interface org.scijava.widget.WidgetModel

Gets the available objects for use with the widget.

getObjects(Class<T>) - Method in class org.scijava.object.DefaultObjectService

getObjects(Class<T>) - Method in interface org.scijava.object.ObjectService

Gets a list of all registered objects compatible with the given type.

getObjectService() - Method in interface org.scijava.display.DisplayService

Deprecated.

Use DisplayService.objectService() instead.

getOctave() - Method in class org.scijava.util.TunePlayer

getOpener(String) - Method in interface org.scijava.io.IOService

Gets the most appropriate IOPlugin for opening data from the given source.

getOptions(Class<O>) - Method in class org.scijava.options.DefaultOptionsService

getOptions() - Method in class org.scijava.options.event.OptionsEvent

getOptions(Class<O>) - Method in interface org.scijava.options.OptionsService

Gets the options plugin of the given class, or null if none.

getOrder() - Method in class org.scijava.io.handle.AbstractDataHandle

getOrder() - Method in interface org.scijava.io.handle.DataHandle

Returns the byte order of the stream.

getOrganizationName() - Method in class org.scijava.util.POM

Gets the organization name.

getOrganizationURL() - Method in class org.scijava.util.POM

Gets the organization URL.

getOutput(String) - Method in class org.scijava.command.CommandInfo

getOutput(String, Class<T>) - Method in class org.scijava.command.CommandInfo

getOutput(String) - Method in class org.scijava.command.CommandModule

getOutput(String) - Method in class org.scijava.command.DynamicCommand

getOutput() - Method in class org.scijava.console.OutputEvent

Gets the output string.

getOutput(String) - Method in class org.scijava.module.AbstractModule

getOutput(String) - Method in class org.scijava.module.AbstractModuleInfo

getOutput(String, Class<T>) - Method in class org.scijava.module.AbstractModuleInfo

getOutput(String) - Method in interface org.scijava.module.Module

Gets the value of the output with the given name.

getOutput(String) - Method in interface org.scijava.module.ModuleInfo

Gets the output item with the given name.

getOutput(String, Class<T>) - Method in interface org.scijava.module.ModuleInfo

Gets the output item with the given name and type.

getOutputField(String) - Method in class org.scijava.command.DynamicCommandInfo

Gets the Field corresponding to the given @Parameter annotated module output, or null if the output does not exist or was not declared using the @Parameter mechanism.

getOutputs() - Method in class org.scijava.module.AbstractModule

getOutputs() - Method in interface org.scijava.module.Module

Gets a table of output values.

getOutputStatement(String) - Method in class org.scijava.script.AdaptedScriptLanguage

getOutputStatement(String) - Method in interface org.scijava.script.ScriptLanguage

getOutputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayUnwrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayWrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayUnwrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayWrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayUnwrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayWrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayUnwrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayWrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayUnwrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayWrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayUnwrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayWrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayUnwrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayWrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayUnwrapper

getOutputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayWrapper

getOutputType() - Method in class org.scijava.convert.CastingConverter

getOutputType() - Method in interface org.scijava.convert.Converter

getOutputType() - Method in class org.scijava.convert.DefaultConverter

getOutputType() - Method in class org.scijava.convert.FileListConverters.FileArrayToStringConverter

getOutputType() - Method in class org.scijava.convert.FileListConverters.FileToStringConverter

getOutputType() - Method in class org.scijava.convert.FileListConverters.StringToFileArrayConverter

getOutputType() - Method in class org.scijava.convert.FileListConverters.StringToFileConverter

getOutputType() - Method in class org.scijava.convert.NullConverter

getOutputType() - Method in class org.scijava.convert.NumberToBigDecimalConverter

getOutputType() - Method in class org.scijava.convert.NumberToBigIntegerConverter

getOutputType() - Method in class org.scijava.convert.NumberToDoubleConverter

getOutputType() - Method in class org.scijava.convert.NumberToFloatConverter

getOutputType() - Method in class org.scijava.convert.NumberToIntegerConverter

getOutputType() - Method in class org.scijava.convert.NumberToLongConverter

getOutputType() - Method in class org.scijava.convert.NumberToShortConverter

getPackage() - Method in class org.scijava.util.Manifest

getPanel() - Method in class org.scijava.ui.viewer.AbstractDisplayViewer

getPanel() - Method in interface org.scijava.ui.viewer.DisplayViewer

Gets the display panel that hosts the gui elements.

getPanel() - Method in class org.scijava.widget.DefaultWidgetModel

getPanel() - Method in interface org.scijava.widget.WidgetModel

Gets the input panel intended to house the widget.

getParam(LinkedList<String>) - Method in class org.scijava.console.AbstractConsoleArgument

If the next argument is an appropriate parameter to a ConsoleArgument, retrieves it; otherwise, returns null.

getParameter() - Method in class org.scijava.command.CommandModuleItem

getParameter(String) - Method in class org.scijava.script.AdaptedScriptLanguage

getParameter(String) - Method in interface org.scijava.script.ScriptLanguage

getParameter(String) - Method in class org.scijava.ui.dnd.MIMEType

Gets the value of the parameter with the given name, or null if none.

getParameters() - Method in class org.scijava.ui.dnd.MIMEType

Gets the parameter names associated with this MIME type.

getParent() - Method in class org.scijava.console.MultiPrintStream

getParent() - Method in class org.scijava.menu.ShadowMenu

Gets this node's parent, or null if it is a root node.

getParent(Thread) - Method in class org.scijava.thread.DefaultThreadService

getParent(Thread) - Method in interface org.scijava.thread.ThreadService

Returns the thread that called the specified thread.

getParentArtifactId() - Method in class org.scijava.util.POM

Gets the POM's parent artifactId.

getParentGroupId() - Method in class org.scijava.util.POM

Gets the POM's parent groupId.

getParentVersion() - Method in class org.scijava.util.POM

Gets the POM's parent artifactId.

getPath() - Method in class org.scijava.script.ScriptInfo

Gets the path to the script on disk.

getPath(File) - Static method in class org.scijava.util.FileUtils

Gets the absolute path to the given file, with the directory separator standardized to forward slash, like most platforms use.

getPath(String, String) - Static method in class org.scijava.util.FileUtils

Gets a standardized path based on the given one, with the directory separator standardized from the specific separator to forward slash, like most platforms use.

getPath() - Method in class org.scijava.util.XML

Gets the path to the XML document, or null if none.

getPersistKey() - Method in class org.scijava.command.CommandModuleItem

getPersistKey() - Method in class org.scijava.module.AbstractModuleItem

getPersistKey() - Method in class org.scijava.module.DefaultMutableModuleItem

getPersistKey() - Method in interface org.scijava.module.ModuleItem

Gets the key to use for saving the value persistently.

getPlatformService() - Method in class org.scijava.platform.AbstractPlatform

getPlugin(Class<P>) - Method in class org.scijava.plugin.DefaultPluginService

getPlugin(Class<P>, Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService

getPlugin(String) - Method in class org.scijava.plugin.DefaultPluginService

getPlugin(Class<P>) - Method in interface org.scijava.plugin.PluginService

Gets the first available plugin of the given class, or null if none.

getPlugin(Class<P>, Class<PT>) - Method in interface org.scijava.plugin.PluginService

Gets the first available plugin of the given class, or null if none.

getPlugin(String) - Method in interface org.scijava.plugin.PluginService

Gets the first available plugin of the given class name, or null if none.

getPluginClass() - Method in class org.scijava.command.CommandInfo

getPluginClass() - Method in class org.scijava.plugin.PluginInfo

Obtains the Class of the item objects, if that class has already been loaded.

getPluginIndex() - Method in class org.scijava.Context

getPlugins() - Method in class org.scijava.plugin.DefaultPluginService

getPlugins(Class<PT>) - Method in class org.scijava.plugin.PluginIndex

Gets a list of registered plugins compatible with the given type.

getPlugins() - Method in interface org.scijava.plugin.PluginService

Gets the list of known plugins.

getPlugins() - Method in interface org.scijava.plugin.PTService

Gets the plugins managed by this service.

getPluginService() - Method in interface org.scijava.display.DisplayService

Deprecated.

Use DisplayService.pluginService() instead.

getPluginService() - Method in interface org.scijava.plugin.PTService

Deprecated.

Use PTService.pluginService() instead.

getPluginsOfClass(Class<P>) - Method in class org.scijava.plugin.DefaultPluginService

getPluginsOfClass(Class<P>, Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService

getPluginsOfClass(String) - Method in class org.scijava.plugin.DefaultPluginService

getPluginsOfClass(String, Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService

getPluginsOfClass(Class<P>) - Method in interface org.scijava.plugin.PluginService

Gets the list of plugins of the given class.

getPluginsOfClass(Class<P>, Class<PT>) - Method in interface org.scijava.plugin.PluginService

Gets the list of plugins of the given class.

getPluginsOfClass(String) - Method in interface org.scijava.plugin.PluginService

Gets the list of plugins with the given class name.

getPluginsOfClass(String, Class<PT>) - Method in interface org.scijava.plugin.PluginService

Gets the list of plugins with the given class name.

getPluginsOfType(Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService

getPluginsOfType(Class<PT>) - Method in interface org.scijava.plugin.PluginService

Gets the list of plugins of the given type (e.g., Service).

getPluginType() - Method in interface org.scijava.app.AppService

getPluginType() - Method in class org.scijava.command.DefaultCommandService

getPluginType() - Method in interface org.scijava.console.ConsoleService

getPluginType() - Method in class org.scijava.convert.AbstractConvertService

getPluginType() - Method in interface org.scijava.io.handle.DataHandleService

getPluginType() - Method in interface org.scijava.io.IOService

getPluginType() - Method in interface org.scijava.io.location.LocationService

getPluginType() - Method in interface org.scijava.options.OptionsService

getPluginType() - Method in class org.scijava.platform.DefaultPlatformService

getPluginType(Class<P>) - Static method in class org.scijava.plugin.DefaultPluginService

Gets the plugin type of the given plugin class, as declared by its @Plugin annotation (i.e., Plugin.type()).

getPluginType() - Method in class org.scijava.plugin.PluginInfo

Gets the type of plugin described by the metadata.

getPluginType() - Method in interface org.scijava.plugin.PTService

Gets the type of plugins managed by this service.

getPluginType() - Method in interface org.scijava.run.RunService

getPluginType() - Method in interface org.scijava.script.process.ScriptProcessorService

getPluginType() - Method in interface org.scijava.script.ScriptHeaderService

getPluginType() - Method in interface org.scijava.script.ScriptService

getPluginType() - Method in class org.scijava.text.DefaultTextService

getPluginType() - Method in interface org.scijava.tool.ToolService

getPluginType() - Method in interface org.scijava.ui.dnd.DragAndDropService

getPluginType() - Method in interface org.scijava.widget.WidgetService

getPOM() - Method in class org.scijava.app.AbstractApp

getPOM() - Method in interface org.scijava.app.App

Gets the Maven POM containing metadata about the application.

getPOM(Class<?>, String, String) - Static method in class org.scijava.util.POM

Gets the Maven POM associated with the given class.

getPrefix(int) - Method in class org.scijava.log.AbstractLogService

Deprecated.

Use LogLevel.prefix(int) instead.

getPresets() - Method in class org.scijava.command.CommandInfo

Gets the table of items with fixed, preset values.

getPrevService(Class<S>, Class<? extends S>) - Method in class org.scijava.service.ServiceIndex

Gets the lowest priority service compatible with class c, which is higher priority than the ref service.

getPrimitiveType(Class<T>) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

use Types.unbox(java.lang.Class<T>)

getPriority() - Method in class org.scijava.AbstractUIDetails

getPriority() - Method in class org.scijava.command.DynamicCommandInfo

getPriority() - Method in class org.scijava.plugin.AbstractRichPlugin

getPriority() - Method in interface org.scijava.Prioritized

Gets the sort priority of the object.

getProblems() - Method in class org.scijava.command.CommandInfo

getProblems() - Method in class org.scijava.command.DynamicCommandInfo

getProblems() - Method in class org.scijava.module.MethodRef

getProblems() - Method in interface org.scijava.module.ModuleInfo

getProblems() - Method in interface org.scijava.Validated

Gets the list of problems encountered while initializing the object.

getProcessedScript() - Method in class org.scijava.script.ScriptInfo

Gets the script contents after script processing.

getProcessor() - Method in class org.scijava.module.event.ModulePostprocessEvent

getProcessor() - Method in class org.scijava.module.event.ModulePreprocessEvent

getProcessor() - Method in class org.scijava.module.event.ModuleProcessEvent

getProgram(String...) - Method in class org.scijava.script.AdaptedScriptLanguage

getProgram(String...) - Method in interface org.scijava.script.ScriptLanguage

getProgressMaximum() - Method in class org.scijava.app.event.StatusEvent

Gets progress maximum.

getProgressMaximum() - Method in class org.scijava.task.DefaultTask

getProgressMaximum() - Method in interface org.scijava.task.Task

Gets the number of steps the task performs in total.

getProgressValue() - Method in class org.scijava.app.event.StatusEvent

Gets progress value.

getProgressValue() - Method in class org.scijava.task.DefaultTask

getProgressValue() - Method in interface org.scijava.task.Task

Gets the step the task is currently performing.

getProjectDescription() - Method in class org.scijava.util.POM

Gets the project description.

getProjectInceptionYear() - Method in class org.scijava.util.POM

Gets the project inception year.

getProjectName() - Method in class org.scijava.util.POM

Gets the project name.

getProjectURL() - Method in class org.scijava.util.POM

Gets the project URL.

getQueryMap() - Method in class org.scijava.io.location.URILocation

getQueryValue(String) - Method in class org.scijava.io.location.URILocation

getRandomAccessFile() - Method in class org.scijava.io.handle.FileHandle

Gets the random access file object backing this FileHandle.

getReader() - Method in class org.scijava.script.AbstractScriptContext

getReader() - Method in class org.scijava.script.ScriptInfo

Gets a reader which delivers the script's content.

getReason() - Method in class org.scijava.module.event.ModuleCanceledEvent

getRecentFiles() - Method in class org.scijava.io.DefaultRecentFileService

getRecentFiles() - Method in interface org.scijava.io.RecentFileService

Gets the list of recent files.

getRed(int, int) - Method in class org.scijava.ui.ARGBPlane

getRed() - Method in class org.scijava.util.ColorRGB

getResolver(URI) - Method in class org.scijava.io.location.DefaultLocationService

getResolver(URI) - Method in interface org.scijava.io.location.LocationService

Returns a LocationResolver capable of resolving URL like the one provided to this method.

getResult() - Method in interface org.scijava.script.CodeGenerator

Deprecated.

getResult() - Method in class org.scijava.script.CodeGeneratorJava

Deprecated.

getReturnValue() - Method in class org.scijava.script.ScriptModule

Gets the return value of the script.

getSampleRate() - Method in class org.scijava.util.TunePlayer

getSaver(D, String) - Method in interface org.scijava.io.IOService

Gets the most appropriate IOPlugin for saving data to the given destination.

getSCMConnection() - Method in class org.scijava.util.POM

Gets the SCM connection string.

getSCMDeveloperConnection() - Method in class org.scijava.util.POM

Gets the SCM developerConnection string.

getSCMTag() - Method in class org.scijava.util.POM

Gets the SCM tag.

getSCMURL() - Method in class org.scijava.util.POM

Gets the SCM URL.

getScopes() - Method in class org.scijava.script.AbstractScriptContext

getScript(File) - Method in class org.scijava.script.DefaultScriptService

getScript(File) - Method in interface org.scijava.script.ScriptService

Gets the cached ScriptInfo metadata for the script at the given file, creating it if it does not already exist.

getScriptDirectories() - Method in class org.scijava.script.DefaultScriptService

getScriptDirectories() - Method in interface org.scijava.script.ScriptService

Gets the base directories to scan for scripts.

getScriptEngine() - Method in class org.scijava.script.AdaptedScriptLanguage

getScripts() - Method in class org.scijava.script.DefaultScriptService

getScripts() - Method in interface org.scijava.script.ScriptService

Gets all available scripts.

getSelectionGroup() - Method in class org.scijava.AbstractUIDetails

getSelectionGroup() - Method in class org.scijava.command.DynamicCommandInfo

getSelectionGroup() - Method in interface org.scijava.UIDetails

Gets the name of the selection group to which the object belongs.

getService(Class<S>) - Method in class org.scijava.Context

Gets the service of the given class, or null if there is no matching service.

getService(String) - Method in class org.scijava.Context

Gets the service of the given class name (useful for scripts).

getService(Class<S>) - Method in class org.scijava.service.ServiceIndex

Gets the first available service compatible with the given class.

getServiceIndex() - Method in class org.scijava.Context

getShortName() - Method in class org.scijava.AbstractGateway

getShortName() - Method in interface org.scijava.Gateway

Gets a very succinct name for use referring to this gateway, e.g.

getShortName() - Method in class org.scijava.SciJava

getSingleInput(Module, Class<T>) - Method in class org.scijava.module.DefaultModuleService

getSingleInput(Module, Collection<Class<?>>) - Method in class org.scijava.module.DefaultModuleService

getSingleInput(Module, Class<T>) - Method in interface org.scijava.module.ModuleService

Checks the given module for a solitary unresolved fillable input of the given type, returning the relevant ModuleItem if found, or null if not exactly one unresolved fillable input of that type.

getSingleInput(Module, Collection<Class<?>>) - Method in interface org.scijava.module.ModuleService

As ModuleService.getSingleInput(Module, Class) but will match with a set of potential classes, at the cost of generic parameter safety.

getSingleInput(Module, Class<?>) - Method in class org.scijava.module.process.AbstractSingleInputPreprocessor

Helper method to look up the name of singleton module inputs of a given type.

getSingleOutput(Module, Class<T>) - Method in class org.scijava.module.DefaultModuleService

getSingleOutput(Module, Collection<Class<?>>) - Method in class org.scijava.module.DefaultModuleService

getSingleOutput(Module, Class<T>) - Method in interface org.scijava.module.ModuleService

Checks the given module for a solitary unresolved output of the given type, returning the relevant ModuleItem if found, or null if not exactly one unresolved output of that type.

getSingleOutput(Module, Collection<Class<?>>) - Method in interface org.scijava.module.ModuleService

As ModuleService.getSingleOutput(Module, Class) but will match with a set of potential classes, at the cost of generic parameter safety.

getSoftMax() - Method in class org.scijava.widget.DefaultWidgetModel

getSoftMax() - Method in interface org.scijava.widget.WidgetModel

Gets the "soft" maximum value for the module input.

getSoftMaximum() - Method in class org.scijava.module.AbstractModuleItem

getSoftMaximum() - Method in class org.scijava.module.DefaultMutableModuleItem

getSoftMaximum() - Method in interface org.scijava.module.ModuleItem

Gets the "soft" maximum value (if applicable).

getSoftMin() - Method in class org.scijava.widget.DefaultWidgetModel

getSoftMin() - Method in interface org.scijava.widget.WidgetModel

Gets the "soft" minimum value for the module input.

getSoftMinimum() - Method in class org.scijava.module.AbstractModuleItem

getSoftMinimum() - Method in class org.scijava.module.DefaultMutableModuleItem

getSoftMinimum() - Method in interface org.scijava.module.ModuleItem

Gets the "soft" minimum value (if applicable).

getSource() - Method in class org.scijava.console.OutputEvent

Gets the source of the output.

getSource() - Method in class org.scijava.io.event.DataOpenedEvent

Gets the source from which data was opened.

getSource() - Method in class org.scijava.log.AbstractLogService

getSource() - Method in class org.scijava.log.DefaultLogger

getSource() - Method in interface org.scijava.log.Logger

Returns the LogSource associated with this logger.

getSpecificationTitle() - Method in class org.scijava.util.Manifest

getSpecificationVendor() - Method in class org.scijava.util.Manifest

getSpecificationVersion() - Method in class org.scijava.util.Manifest

getStackDump() - Static method in class org.scijava.util.DebugUtils

Provides a complete stack dump of all threads.

getStackTrace() - Method in class org.scijava.event.SciJavaEvent

Gets the stack trace of the calling thread when the event was published.

getStackTrace(Throwable) - Static method in class org.scijava.util.DebugUtils

Extracts the given exception's corresponding stack trace to a string.

getStartIndex() - Method in class org.scijava.script.AutoCompletionResult

getStatusBar() - Method in interface org.scijava.ui.UserInterface

Gets the main SciJava status bar, or null if not applicable.

getStatusMessage(String, StatusEvent) - Method in class org.scijava.app.DefaultStatusService

getStatusMessage() - Method in class org.scijava.app.event.StatusEvent

Gets status message, or null for no change.

getStatusMessage(String, StatusEvent) - Method in interface org.scijava.app.StatusService

Gets the status message of the given event.

getStatusMessage() - Method in class org.scijava.task.DefaultTask

getStatusMessage() - Method in interface org.scijava.task.Task

Gets a status message describing what the task is currently doing.

getStatusMessage(StatusEvent) - Method in class org.scijava.ui.DefaultUIService

getStatusMessage(StatusEvent) - Method in interface org.scijava.ui.UIService

Gets the status message associated with the given event.

getStepSize() - Method in class org.scijava.command.CommandModuleItem

getStepSize() - Method in class org.scijava.module.AbstractModuleItem

getStepSize() - Method in class org.scijava.module.DefaultMutableModuleItem

getStepSize() - Method in interface org.scijava.module.ModuleItem

Gets the preferred step size to use when rendering the item in a user interface (if applicable).

getStepSize() - Method in class org.scijava.widget.DefaultWidgetModel

getStepSize() - Method in interface org.scijava.widget.WidgetModel

Gets the step size between values for the module input.

getSubscribers(Class<E>) - Method in class org.scijava.event.DefaultEventService

getSubscribers(Class<E>) - Method in interface org.scijava.event.EventService

Gets a list of all subscribers to the given event class (and subclasses thereof).

getSystemClipboard() - Method in interface org.scijava.ui.UserInterface

Gets the system clipboard associated with this UI, or null if not applicable.

getSystemProperty() - Method in interface org.scijava.app.App

A system property which, if set, overrides the base directory of the application.

getTargetPlatforms() - Method in class org.scijava.platform.DefaultPlatformService

getTargetPlatforms() - Method in interface org.scijava.platform.PlatformService

Gets the platform handlers applicable to this platform.

getTask() - Method in class org.scijava.task.event.TaskEvent

getTempo() - Method in class org.scijava.util.TunePlayer

getText() - Method in class org.scijava.widget.DefaultWidgetModel

getText() - Method in interface org.scijava.widget.WidgetModel

Gets the input's value rendered as a string.

getThreadContext(Thread) - Method in class org.scijava.thread.DefaultThreadService

getThreadContext(Thread) - Method in interface org.scijava.thread.ThreadService

Analyzes the Context of the given thread.

getTimeout() - Method in class org.scijava.io.location.AbstractRemoteLocation

getTimeout() - Method in interface org.scijava.io.location.RemoteLocation

Gets the connection timeout for this location.

getTimestamp() - Method in class org.scijava.event.EventDetails

getTitle() - Method in class org.scijava.AbstractGateway

getTitle() - Method in interface org.scijava.app.App

Gets the title of the application.

getTitle() - Method in class org.scijava.command.CommandInfo

getTitle() - Method in class org.scijava.command.DynamicCommandInfo

getTitle() - Method in interface org.scijava.Gateway

getTitle() - Method in interface org.scijava.module.ModuleInfo

getTitle() - Method in interface org.scijava.UIDetails

Gets an appropriate title for the object, for use in a user interface.

getTone(int, char) - Method in class org.scijava.util.TunePlayer

Gets the value of the given tone for the current octave.

getTool(String) - Method in class org.scijava.tool.DefaultToolService

getTool() - Method in class org.scijava.tool.event.ToolEvent

getTool(String) - Method in interface org.scijava.tool.ToolService

getTool(Class<T>) - Method in interface org.scijava.tool.ToolService

Get a tool given its class.

getToolBar() - Method in interface org.scijava.ui.UserInterface

Gets the main SciJava toolbar, or null if not applicable.

getTools() - Method in class org.scijava.tool.DefaultToolService

getTools() - Method in interface org.scijava.tool.ToolService

getTopLeft() - Method in class org.scijava.util.IntRect

Gets the top left coordinate of the rectangle.

getTopLeft() - Method in class org.scijava.util.RealRect

Gets the top left coordinate of the rectangle.

getType() - Method in class org.scijava.command.CommandModuleItem

getType() - Method in interface org.scijava.console.ConsoleArgument

getType() - Method in interface org.scijava.console.ConsoleService

getType() - Method in class org.scijava.convert.AbstractConverter

getType() - Method in class org.scijava.convert.AbstractConvertService

getType() - Method in class org.scijava.download.MultiWriteHandle

getType() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle

getType() - Method in class org.scijava.io.handle.BytesHandle

getType() - Method in interface org.scijava.io.handle.DataHandleService

getType() - Method in class org.scijava.io.handle.DummyHandle

getType() - Method in class org.scijava.io.handle.FileHandle

getType() - Method in interface org.scijava.io.IOPlugin

getType() - Method in interface org.scijava.io.IOService

getType() - Method in class org.scijava.io.location.AbstractLocationResolver

getType() - Method in interface org.scijava.io.location.LocationService

getType() - Method in class org.scijava.module.DefaultMutableModuleItem

getType() - Method in interface org.scijava.module.ModuleItem

Gets the type of the item.

getType(E) - Method in class org.scijava.object.ObjectIndex

Return the type by which to index the object.

getType(PluginInfo<?>) - Method in class org.scijava.plugin.PluginIndex

Overrides the type by which the entries are indexed.

getType() - Method in interface org.scijava.run.CodeRunner

getType() - Method in interface org.scijava.run.RunService

getType() - Method in interface org.scijava.script.ScriptHeader

getType() - Method in interface org.scijava.script.ScriptHeaderService

getType() - Method in class org.scijava.text.DefaultTextService

getType() - Method in interface org.scijava.text.TextFormat

getType() - Method in interface org.scijava.Typed

Gets the type associated with the object.

getType() - Method in interface org.scijava.ui.dnd.DragAndDropService

getType() - Method in class org.scijava.ui.dnd.FileDragAndDropHandler

getType() - Method in class org.scijava.ui.dnd.ListDragAndDropHandler

getType() - Method in class org.scijava.ui.dnd.ScriptFileDragAndDropHandler

getType() - Method in interface org.scijava.widget.InputWidget

getType() - Method in interface org.scijava.widget.WidgetService

getTypeParameter(Type, Class<?>, int) - Static method in class org.scijava.util.GenericUtils

Deprecated.

Use Types.param(java.lang.reflect.Type, java.lang.Class<?>, int) instead.

getTypes(Class<?>) - Static method in class org.scijava.object.ObjectIndex

Gets a new set containing the type and all its supertypes.

getTypes(Field, Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.fieldType(Field, Class) and Types.raws(java.lang.reflect.Type) instead.

getUI() - Method in class org.scijava.ui.AbstractInputHarvesterPlugin

Gets the name (or class name) of the input harvester's affiliated UI.

getUI(String) - Method in class org.scijava.ui.DefaultUIService

getUI() - Method in class org.scijava.ui.event.UIEvent

Gets the user interface.

getUI(String) - Method in interface org.scijava.ui.UIService

Gets the UI with the given name (or class name).

getURI() - Method in class org.scijava.io.location.FileLocation

getURI() - Method in interface org.scijava.io.location.Location

Gets the location expressed as a URI, or null if the location cannot be expressed as such.

getURI() - Method in class org.scijava.io.location.URILocation

getURI() - Method in class org.scijava.io.location.URLLocation

Gets the associated URI, or null if this URL is not formatted strictly according to to RFC2396 and cannot be converted to a URI.

getURL() - Method in class org.scijava.io.location.URLLocation

Gets the associated URL.

getURL() - Method in class org.scijava.script.ScriptInfo

Gets the URL of the script.

getValidater() - Method in class org.scijava.command.CommandModuleItem

getValidater() - Method in class org.scijava.module.AbstractModuleItem

getValidater() - Method in class org.scijava.module.DefaultMutableModuleItem

getValidater() - Method in interface org.scijava.module.ModuleItem

Gets the function that is called to validate the item's value.

getValue(Module) - Method in class org.scijava.module.AbstractModuleItem

getValue(Module) - Method in interface org.scijava.module.ModuleItem

Gets the item's current value with respect to the given module.

getValue(int) - Method in class org.scijava.util.BoolArray

getValue(int) - Method in class org.scijava.util.ByteArray

getValue(int) - Method in class org.scijava.util.CharArray

getValue(Field, Object) - Static method in class org.scijava.util.ClassUtils

Gets the given field's value of the specified object instance, or null if the value cannot be obtained.

getValue(int) - Method in class org.scijava.util.DoubleArray

getValue(int) - Method in class org.scijava.util.FloatArray

getValue(int) - Method in class org.scijava.util.IntArray

getValue(int) - Method in class org.scijava.util.LongArray

getValue(int) - Method in class org.scijava.util.ObjectArray

getValue(int) - Method in class org.scijava.util.ShortArray

getValue(String) - Method in class org.scijava.widget.AbstractInputPanel

getValue() - Method in class org.scijava.widget.DefaultWidgetModel

getValue(String) - Method in interface org.scijava.widget.InputPanel

Returns the value of the given widget's input.

getValue() - Method in interface org.scijava.widget.InputWidget

Gets the current widget value.

getValue() - Method in interface org.scijava.widget.WidgetModel

Gets the current value of the module input.

getVar(String) - Method in class org.scijava.util.ReflectedUniverse

Returns the value of a variable or field in the universe.

getVersion() - Method in class org.scijava.AbstractGateway

getVersion() - Method in interface org.scijava.app.App

Gets the version of the application.

getVersion() - Method in interface org.scijava.module.ModuleInfo

getVersion() - Method in class org.scijava.plugin.PluginInfo

getVersion() - Method in class org.scijava.script.ScriptInfo

getVersion() - Method in class org.scijava.util.Manifest

getVersion() - Method in class org.scijava.util.POM

Gets the POM's version.

getVersion(Class<?>) - Static method in class org.scijava.util.VersionUtils

Looks up the version of the specified class using any means available, appending the build number to any SNAPSHOT version.

getVersion(Class<?>, String, String) - Static method in class org.scijava.util.VersionUtils

Looks up the version of the specified class using any means available, appending the build number to any SNAPSHOT version.

getVersion() - Method in interface org.scijava.Versioned

Gets the version of the object.

getVersionFromManifest(Class<?>) - Static method in class org.scijava.util.VersionUtils

Looks up the version of the specified class using a JAR manifest if available, appending the build number to any SNAPSHOT version.

getVersionFromPOM(Class<?>, String, String) - Static method in class org.scijava.util.VersionUtils

Looks up the version of the specified class using the specified POM, or base POM directory if groupId and artifactId are null.

getViewerPlugins() - Method in class org.scijava.ui.DefaultUIService

getViewerPlugins() - Method in interface org.scijava.ui.UIService

Gets the list of known viewer plugins.

getVisibility() - Method in class org.scijava.command.CommandModuleItem

getVisibility() - Method in class org.scijava.module.AbstractModuleItem

getVisibility() - Method in class org.scijava.module.DefaultMutableModuleItem

getVisibility() - Method in interface org.scijava.module.ModuleItem

Gets the visibility of the item.

getVisibleUIs() - Method in class org.scijava.ui.DefaultUIService

getVisibleUIs() - Method in interface org.scijava.ui.UIService

Gets the user interfaces that are currently visible.

getWeight() - Method in class org.scijava.MenuEntry

getWheelRotation() - Method in class org.scijava.display.event.input.MsWheelEvent

getWidget(String) - Method in class org.scijava.widget.AbstractInputPanel

getWidget(String) - Method in interface org.scijava.widget.InputPanel

Gets the widget with the provided name.

getWidgetComponentType() - Method in interface org.scijava.widget.InputPanel

Gets the type of the UI component housing the panel's widgets.

getWidgetCount() - Method in class org.scijava.widget.AbstractInputPanel

getWidgetCount() - Method in interface org.scijava.widget.InputPanel

Gets the number of active widgets in the input panel.

getWidgetLabel() - Method in class org.scijava.widget.DefaultWidgetModel

getWidgetLabel() - Method in interface org.scijava.widget.WidgetModel

Gets the text to use when labeling this widget.

getWidgetStyle() - Method in class org.scijava.command.CommandModuleItem

getWidgetStyle() - Method in class org.scijava.module.AbstractModuleItem

getWidgetStyle() - Method in class org.scijava.module.DefaultMutableModuleItem

getWidgetStyle() - Method in interface org.scijava.module.ModuleItem

Gets the preferred widget style to use when rendering the item in a user interface.

getWidth() - Method in class org.scijava.ui.ARGBPlane

getWindow() - Method in class org.scijava.display.event.window.WinEvent

Gets the actual UI-specific window.

getWindow() - Method in class org.scijava.ui.viewer.AbstractDisplayViewer

getWindow() - Method in interface org.scijava.ui.viewer.DisplayPanel

Gets the window housing this panel.

getWindow() - Method in interface org.scijava.ui.viewer.DisplayViewer

Gets the window in which the view is displayed.

getWriter() - Method in class org.scijava.script.AbstractScriptContext

getX() - Method in class org.scijava.display.event.input.InputEvent

getX() - Method in class org.scijava.input.DefaultInputService

getX() - Method in interface org.scijava.input.InputService

Gets the last observed X coordinate of the mouse cursor, relative to a specific display.

getY() - Method in class org.scijava.display.event.input.InputEvent

getY() - Method in class org.scijava.input.DefaultInputService

getY() - Method in interface org.scijava.input.InputService

Gets the last observed Y coordinate of the mouse cursor, relative to a specific display.

GHOSTWHITE - Static variable in class org.scijava.util.Colors

GOLD - Static variable in class org.scijava.util.Colors

GOLDENROD - Static variable in class org.scijava.util.Colors

GRAY - Static variable in class org.scijava.util.Colors

GREEN - Static variable in class org.scijava.util.Colors

GREENYELLOW - Static variable in class org.scijava.util.Colors

GREY - Static variable in class org.scijava.util.Colors

H

handle(LinkedList<String>) - Method in class org.scijava.command.console.RunArgument

Deprecated.

handle(LinkedList<String>) - Method in interface org.scijava.console.ConsoleArgument

Handles the front of the given list of arguments.

handle(LinkedList<String>) - Method in class org.scijava.console.SystemPropertyArgument

handle(LinkedList<String>) - Method in class org.scijava.io.console.OpenArgument

handle() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle

handle(Exception) - Method in class org.scijava.log.DefaultUncaughtExceptionHandler

handle(LinkedList<String>) - Method in class org.scijava.main.console.MainArgument

handle(LinkedList<String>) - Method in class org.scijava.run.console.RunArgument

handle(LinkedList<String>) - Method in class org.scijava.script.console.RunScriptArgument

Deprecated.

handle(LinkedList<String>) - Method in class org.scijava.ui.console.HeadlessArgument

handle(LinkedList<String>) - Method in class org.scijava.ui.console.ShowUIArgument

handle(LinkedList<String>) - Method in class org.scijava.ui.console.UIArgument

handledType() - Method in class org.scijava.script.AbstractScriptHeader

HandlerPlugin<D> - Interface in org.scijava.plugin

Interface for plugins which "handle" a particular subset of data objects.

HandlerService<DT,PT extends HandlerPlugin<DT>> - Interface in org.scijava.plugin

A service for managing HandlerPlugins of a particular type.

harvest(Module) - Method in interface org.scijava.widget.InputHarvester

Performs the harvesting process.

harvestInputs(InputPanel<P, W>, Module) - Method in interface org.scijava.widget.InputHarvester

Gathers input values from the user or other source.

hasClass(String) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.load(String) instead.

hasClass(String, ClassLoader) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.load(String, ClassLoader) instead.

hash(String) - Static method in class org.scijava.util.DigestUtils

Gets the Java hash code of the given string, as a byte array.

hash(byte[]) - Static method in class org.scijava.util.DigestUtils

Gets the hash code of the given byte array, as a byte array.

hashCode() - Method in class org.scijava.input.Accelerator

hashCode() - Method in class org.scijava.input.InputModifiers

hashCode() - Method in class org.scijava.io.location.AbstractLocation

hashCode() - Method in class org.scijava.io.location.BytesLocation

hashCode() - Method in class org.scijava.ui.dnd.MIMEType

hashCode() - Method in class org.scijava.util.ColorRGB

hashCode() - Method in class org.scijava.util.IntCoords

hashCode() - Method in class org.scijava.util.IntRect

hashCode() - Method in class org.scijava.util.RealCoords

hashCode() - Method in class org.scijava.util.RealRect

hasLogLevel() - Method in class org.scijava.log.LogSource

hasMoreElements() - Method in class org.scijava.util.IteratorPlus

hasNext() - Method in class org.scijava.menu.ShadowMenuIterator

hasNext() - Method in class org.scijava.util.IteratorPlus

hasParam(LinkedList<String>) - Static method in class org.scijava.console.ConsoleUtils

Deprecated.

Use AbstractConsoleArgument.getParam(LinkedList) instead.

HasPluginInfo - Interface in org.scijava.plugin

A object with associated PluginInfo metadata.

hasWidgets() - Method in class org.scijava.widget.AbstractInputPanel

hasWidgets() - Method in interface org.scijava.widget.InputPanel

Gets whether the input panel has any active widgets.

HeadlessArgument - Class in org.scijava.ui.console

Handles the --headless argument to signal that no UI will be opened and the enclosing Context will not be used after the ConsoleService argument processing is complete.

HeadlessArgument() - Constructor for class org.scijava.ui.console.HeadlessArgument

HeadlessDisplayViewer - Class in org.scijava.ui.headless

A display viewer used when running headless.

HeadlessDisplayViewer() - Constructor for class org.scijava.ui.headless.HeadlessDisplayViewer

HeadlessUI - Class in org.scijava.ui.headless

A no-op user interface used when the application is running headless.

HeadlessUI() - Constructor for class org.scijava.ui.headless.HeadlessUI

HeadlessUI - Class in org.scijava.ui.headlessUI

Deprecated.

Use HeadlessUI instead.

HeadlessUI() - Constructor for class org.scijava.ui.headlessUI.HeadlessUI

Deprecated.

height - Variable in class org.scijava.util.IntRect

height - Variable in class org.scijava.util.RealRect

help() - Method in class org.scijava.script.ScriptREPL

Prints a usage guide.

HELP_LABEL - Static variable in class org.scijava.menu.MenuConstants

HELP_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants

HELP_WEIGHT - Static variable in class org.scijava.menu.MenuConstants

hex(byte[]) - Static method in class org.scijava.util.DigestUtils

Converts the given byte array to a hexidecimal string.

HIGH - Static variable in class org.scijava.Priority

Priority for items that prefer to be sorted earlier.

HIGH_PRIORITY - Static variable in class org.scijava.Priority

Deprecated.

Use Priority.HIGH instead.

hoard - Variable in class org.scijava.object.ObjectIndex

"Them as counts counts moren them as dont count."
—Russell Hoban, Riddley Walker

HONEYDEW - Static variable in class org.scijava.util.Colors

HOTPINK - Static variable in class org.scijava.util.Colors

I

icon() - Method in class org.scijava.AbstractGateway

icon() - Method in interface org.scijava.Gateway

Gets this application context's IconService.

IconDrawer - Interface in org.scijava.tool

CustomDrawnTools use IconDrawers to draw their icon on screen.

IconService - Interface in org.scijava.tool

IconService allows a Tool to obtain the IconDrawer.

Identifiable - Interface in org.scijava

An object which can express itself by some unique string.

IgnoreAsCallingClass - Annotation Type in org.scijava.log

Classes annotated with IgnoreAsCallingClass are ignored by CallingClassUtils.getCallingClass().

IMAGE_LABEL - Static variable in class org.scijava.menu.MenuConstants

IMAGE_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants

IMAGE_WEIGHT - Static variable in class org.scijava.menu.MenuConstants

index(File) - Method in class org.scijava.annotations.DirectoryIndexer

Index<A extends Annotation> - Class in org.scijava.annotations

Makes the annotation indexes accessible.

Indexable - Annotation Type in org.scijava.annotations

Meta annotation for indexable annotations.

IndexItem<A extends Annotation> - Class in org.scijava.annotations

Allows access to individual annotations.

indexOf(Object) - Method in class org.scijava.display.AbstractDisplay

indexOf(boolean[], boolean) - Static method in class org.scijava.util.ArrayUtils

Returns the index of the first occurrence of the given value in the given array.

indexOf(byte[], byte) - Static method in class org.scijava.util.ArrayUtils

Returns the index of the first occurrence of the given value in the given array.

indexOf(char[], char) - Static method in class org.scijava.util.ArrayUtils

Returns the index of the first occurrence of the given value in the given array.

indexOf(double[], double) - Static method in class org.scijava.util.ArrayUtils

Returns the index of the first occurrence of the given value in the given array.

indexOf(float[], float) - Static method in class org.scijava.util.ArrayUtils

Returns the index of the first occurrence of the given value in the given array.

indexOf(int[], int) - Static method in class org.scijava.util.ArrayUtils

Returns the index of the first occurrence of the given value in the given array.

indexOf(long[], long) - Static method in class org.scijava.util.ArrayUtils

Returns the index of the first occurrence of the given value in the given array.

indexOf(short[], short) - Static method in class org.scijava.util.ArrayUtils

Returns the index of the first occurrence of the given value in the given array.

indexOf(Object[], Object) - Static method in class org.scijava.util.ArrayUtils

Returns the index of the first occurrence of the given value in the given Object array.

indexOf(boolean) - Method in class org.scijava.util.BoolArray

indexOf(Object) - Method in class org.scijava.util.BoolArray

indexOf(byte) - Method in class org.scijava.util.ByteArray

indexOf(Object) - Method in class org.scijava.util.ByteArray

indexOf(char) - Method in class org.scijava.util.CharArray

indexOf(Object) - Method in class org.scijava.util.CharArray

indexOf(double) - Method in class org.scijava.util.DoubleArray

indexOf(Object) - Method in class org.scijava.util.DoubleArray

indexOf(float) - Method in class org.scijava.util.FloatArray

indexOf(Object) - Method in class org.scijava.util.FloatArray

indexOf(int) - Method in class org.scijava.util.IntArray

indexOf(Object) - Method in class org.scijava.util.IntArray

indexOf(long) - Method in class org.scijava.util.LongArray

indexOf(Object) - Method in class org.scijava.util.LongArray

indexOf(Object) - Method in class org.scijava.util.ObjectArray

indexOf(short) - Method in class org.scijava.util.ShortArray

indexOf(Object) - Method in class org.scijava.util.ShortArray

INDIANRED - Static variable in class org.scijava.util.Colors

INDIGO - Static variable in class org.scijava.util.Colors

info(Object) - Method in interface org.scijava.log.Logger

info(Throwable) - Method in interface org.scijava.log.Logger

info(Object, Throwable) - Method in interface org.scijava.log.Logger

INFO - Static variable in class org.scijava.log.LogLevel

INFO - Static variable in interface org.scijava.log.LogService

Deprecated.

Use LogLevel.INFO.

info() - Method in class org.scijava.script.process.DirectiveScriptProcessor

Gets the active ScriptInfo instance.

Initializable - Interface in org.scijava

Interface for objects which can be initialized.

initialize() - Method in class org.scijava.cache.DefaultCacheService

initialize() - Method in class org.scijava.command.DefaultCommandService

initialize() - Method in class org.scijava.convert.AbstractConvertService

initialize() - Method in class org.scijava.event.DefaultEventService

initialize() - Method in interface org.scijava.Initializable

Initializes the object.

initialize() - Method in class org.scijava.io.DefaultRecentFileService

initialize() - Method in class org.scijava.module.AbstractModule

initialize(Module) - Method in class org.scijava.module.AbstractModuleItem

initialize() - Method in class org.scijava.module.DefaultModuleService

initialize() - Method in interface org.scijava.module.Module

Initializes the module.

initialize(Module) - Method in interface org.scijava.module.ModuleItem

Invokes this item's initializer function, if any, on the given module.

initialize() - Method in class org.scijava.object.DefaultObjectService

initialize() - Method in class org.scijava.platform.DefaultPlatformService

initialize() - Method in class org.scijava.plugin.DefaultPluginService

initialize() - Method in interface org.scijava.plugin.SingletonService

initialize() - Method in interface org.scijava.plugin.WrapperService

initialize() - Method in class org.scijava.prefs.AbstractPrefService

initialize() - Method in class org.scijava.script.DefaultScriptService

initialize() - Method in class org.scijava.script.ScriptREPL

Outputs a greeting, and sets up the initial language and variables of the REPL.

initialize(boolean) - Method in class org.scijava.script.ScriptREPL

Sets up the initial language and variables of the REPL.

initialize() - Method in interface org.scijava.service.Service

Performs any needed initialization when the service is first loaded.

InitPreprocessor - Class in org.scijava.module.process

A preprocessor plugin that populates initial parameter values.

InitPreprocessor() - Constructor for class org.scijava.module.process.InitPreprocessor

inject(Object) - Method in class org.scijava.Context

Injects the application context into the given object.

inject(Object) - Method in class org.scijava.plugin.PluginInfo

Injects the metadata into the given object.

inject(Object, double) - Static method in class org.scijava.Priority

Injects the specified priority into the given object.

input() - Method in class org.scijava.AbstractGateway

input() - Method in interface org.scijava.Gateway

Gets this application context's InputService.

InputEvent - Class in org.scijava.display.event.input

An event indicating input device (e.g., keyboard or mouse) activity in a display.

InputEvent(Display<?>, InputModifiers, int, int) - Constructor for class org.scijava.display.event.input.InputEvent

InputHarvester<P,W> - Interface in org.scijava.widget

An input harvester collects Module input values, according to the following steps: Create an InputPanel with widgets corresponding to the module inputs. Present the panel, if in a UI context. Harvest the final widget values from the panel, updating the Module's input values to match the harvested values. Perform any other needed processing of the results (marking inputs as resolved, storing persisted values to preferences, etc.).

inputList() - Method in class org.scijava.module.AbstractModuleInfo

Gets AbstractModuleInfo.outputMap, initializing if needed.

inputMap() - Method in class org.scijava.module.AbstractModuleInfo

Gets AbstractModuleInfo.inputMap, initializing if needed.

InputModifiers - Class in org.scijava.input

A UI-independent representation of keyboard and mouse modifier states.

InputModifiers(boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class org.scijava.input.InputModifiers

InputPanel<P,W> - Interface in org.scijava.widget

Flexible panel-building interface, for use with UIs that prompt for input values of various types.

inputs() - Method in class org.scijava.command.CommandInfo

inputs() - Method in class org.scijava.module.AbstractModuleInfo

inputs() - Method in interface org.scijava.module.ModuleInfo

Gets the list of input items.

InputService - Interface in org.scijava.input

Interface for service that tracks the current status of input devices (keyboard and mouse in particular).

InputWidget<T,W> - Interface in org.scijava.widget

Interface for input widgets.

insert(int, int) - Method in class org.scijava.util.AbstractPrimitiveArray

Shifts the array to insert space at a specified index.

insert(int, int) - Method in interface org.scijava.util.PrimitiveArray

Shifts the array to insert space at a specified index.

install(LogService) - Static method in class org.scijava.log.DefaultUncaughtExceptionHandler

Instantiable<T> - Interface in org.scijava

An interface declaring the ability to create objects.

InstantiableException - Exception in org.scijava

An exception thrown when an Instantiable cannot create an object.

InstantiableException() - Constructor for exception org.scijava.InstantiableException

InstantiableException(String) - Constructor for exception org.scijava.InstantiableException

InstantiableException(String, Throwable) - Constructor for exception org.scijava.InstantiableException

InstantiableException(Throwable) - Constructor for exception org.scijava.InstantiableException

IntArray - Class in org.scijava.util

An extensible array of int elements.

IntArray() - Constructor for class org.scijava.util.IntArray

Constructs an extensible array of ints, backed by a fixed-size array.

IntArray(int) - Constructor for class org.scijava.util.IntArray

Constructs an extensible array of ints, backed by a fixed-size array.

IntArray(int[]) - Constructor for class org.scijava.util.IntArray

Constructs an extensible array of ints, backed by the given fixed-size array.

IntArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.IntArrayUnwrapper

IntArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.IntArrayWrapper

IntCoords - Class in org.scijava.util

This class represents an (X, Y) coordinate pair in integer coordinates.

IntCoords(int, int) - Constructor for class org.scijava.util.IntCoords

IntegerToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.IntegerToBigDecimalConverter

IntegerToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.IntegerToBigIntegerConverter

IntegerToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.IntegerToDoubleConverter

IntegerToLongConverter() - Constructor for class org.scijava.convert.NumberConverters.IntegerToLongConverter

Interactive - Interface in org.scijava.command

An operation (usually a Command) which is intended to be run interactively.

InteractiveCommand - Class in org.scijava.command

A command intended to be run interactively.

InteractiveCommand(String...) - Constructor for class org.scijava.command.InteractiveCommand

Creates a new interactive command.

interpret(String) - Method in class org.scijava.script.DefaultScriptInterpreter

Interprets the given line of code, which might be part of a multi-line statement.

interpret(String) - Method in interface org.scijava.script.ScriptInterpreter

Interprets the given line of code, which might be part of a multi-line statement.

interrupt() - Method in class org.scijava.util.ReadInto

intersection(IntRect) - Method in class org.scijava.util.IntRect

Returns a Rect representing the intersection of this Rect with the given Rect.

intersection(RealRect) - Method in class org.scijava.util.RealRect

Returns a Rect representing the intersection of this Rect with the given Rect.

intersects(IntRect) - Method in class org.scijava.util.IntRect

Returns true if this rect intersects the given rect.

intersects(RealRect) - Method in class org.scijava.util.RealRect

Returns true if this rect intersects the given rect.

IntRect - Class in org.scijava.util

A class for representing a rectangular region, in integer coordinates.

IntRect() - Constructor for class org.scijava.util.IntRect

IntRect(int, int, int, int) - Constructor for class org.scijava.util.IntRect

InvocationObject - Class in org.scijava.script

Deprecated.

To be removed in SciJava Common 3.0.0.

InvocationObject(String) - Constructor for class org.scijava.script.InvocationObject

Deprecated.

invoke(ScriptModule) - Method in interface org.scijava.script.process.ScriptCallback

Invokes the callback routine.

invoke(Runnable) - Method in class org.scijava.thread.DefaultThreadService

invoke(Runnable) - Method in interface org.scijava.thread.ThreadService

Executes the given code in a special dispatch thread, blocking until execution is complete.

invokeStatementBegin() - Method in interface org.scijava.script.CodeGenerator

Deprecated.

invokeStatementBegin() - Method in class org.scijava.script.CodeGeneratorJava

Deprecated.

invokeStatementEnd() - Method in interface org.scijava.script.CodeGenerator

Deprecated.

invokeStatementEnd() - Method in class org.scijava.script.CodeGeneratorJava

Deprecated.

io() - Method in class org.scijava.AbstractGateway

io() - Method in interface org.scijava.Gateway

Gets this application context's IOService.

IOEvent - Class in org.scijava.io.event

An event indicating that I/O (e.g., opening or saving) has occurred.

IOEvent(String, Object) - Constructor for class org.scijava.io.event.IOEvent

IOPlugin<D> - Interface in org.scijava.io

A plugin which extends an application's I/O capabilities.

IOService - Interface in org.scijava.io

Interface for high-level data I/O: opening and saving data.

is(String) - Method in class org.scijava.AbstractBasicDetails

is(String) - Method in interface org.scijava.BasicDetails

Returns true iff the given key is defined.

is(String) - Method in class org.scijava.command.CommandModuleItem

is(String, String) - Method in class org.scijava.script.process.DirectiveScriptProcessor

Checks whether some key matches the desired value, ignoring case.

isAccepted() - Method in class org.scijava.ui.dnd.event.DragEnterEvent

Gets whether the drag operation is valid.

isAccessibilityIgnored() - Method in class org.scijava.util.ReflectedUniverse

Gets whether access modifiers (protected, private, etc.) are ignored.

isActivated() - Method in class org.scijava.platform.event.AppUserSessionEvent

isActive() - Method in class org.scijava.event.DefaultEventHistory

isActive() - Method in interface org.scijava.event.EventHistory

Gets whether event history tracking is currently active.

isActiveInAppFrame() - Method in interface org.scijava.tool.Tool

When true, tool receives events when the main application frame is active.

isAltDown() - Method in class org.scijava.input.DefaultInputService

isAltDown() - Method in class org.scijava.input.InputModifiers

isAltDown() - Method in interface org.scijava.input.InputService

isAltGrDown() - Method in class org.scijava.input.DefaultInputService

isAltGrDown() - Method in class org.scijava.input.InputModifiers

isAltGrDown() - Method in interface org.scijava.input.InputService

isAlwaysActive() - Method in interface org.scijava.tool.Tool

When true, tool has no button but rather is active all the time.

isAssignable(Type, Type) - Static method in class org.scijava.util.Types

Discerns whether it would be legal to assign a reference of type source to a reference of type target.

isAutoFill() - Method in class org.scijava.command.CommandModuleItem

isAutoFill() - Method in class org.scijava.module.AbstractModuleItem

isAutoFill() - Method in interface org.scijava.module.ModuleItem

Gets whether the item value is allowed to be auto-filled.

isBackground() - Method in class org.scijava.platform.event.AppFocusEvent

isBigEndian() - Method in interface org.scijava.io.handle.DataHandle

Returns true iff the stream's order is DataHandle.ByteOrder.BIG_ENDIAN.

isBoolean(Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.isBoolean(java.lang.Class<?>) instead.

isBoolean(Class<?>) - Static method in class org.scijava.util.Types

isBoolean() - Method in class org.scijava.widget.DefaultWidgetModel

isBoolean() - Method in interface org.scijava.widget.WidgetModel

Gets whether the input is a boolean type (i.e., Boolean or boolean).

isButtonDown(int) - Method in class org.scijava.input.DefaultInputService

isButtonDown(int) - Method in interface org.scijava.input.InputService

Gets whether the given mouse button is currently pressed.

isByte(Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.isByte(java.lang.Class<?>) instead.

isByte(Class<?>) - Static method in class org.scijava.util.Types

isCanceled() - Method in interface org.scijava.Cancelable

Gets whether the operation has been canceled.

isCanceled() - Method in class org.scijava.command.CommandModule

isCanceled() - Method in class org.scijava.command.ContextCommand

isCanceled() - Method in class org.scijava.command.DynamicCommand

isCanceled() - Method in class org.scijava.command.ModuleCommand

isCanceled() - Method in class org.scijava.module.process.AbstractPreprocessorPlugin

isCanceled() - Method in class org.scijava.task.DefaultTask

isCanceled() - Method in class org.scijava.ui.AbstractInputHarvesterPlugin

isCharacter(Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.isCharacter(java.lang.Class<?>) instead.

isCharacter(Class<?>) - Static method in class org.scijava.util.Types

isCharacter() - Method in class org.scijava.widget.DefaultWidgetModel

isCharacter() - Method in interface org.scijava.widget.WidgetModel

Gets whether the input is a character type (i.e., Character or char).

isCheckBox() - Method in class org.scijava.menu.ShadowMenu

Returns true if this node is a checkbox.

isClassObsolete(String) - Method in interface org.scijava.annotations.AbstractIndexWriter.StreamFactory

isClosed - Variable in class org.scijava.display.AbstractDisplay

isCompatible(MIMEType) - Method in class org.scijava.ui.dnd.MIMEType

Gets whether this MIME type is compatible with the given one.

isCompatible(Class<?>) - Method in class org.scijava.ui.dnd.MIMEType

Gets whether this MIME type represents objects of the given Java class.

isCompatible(UserInterface) - Method in class org.scijava.ui.headless.HeadlessDisplayViewer

isCompatible(UserInterface) - Method in interface org.scijava.ui.viewer.DisplayViewer

Returns true if this display viewer can be used with the given UI.

isCompiledLanguage() - Method in interface org.scijava.script.ScriptLanguage

True iff this language requires a compilation step.

isConsumed() - Method in class org.scijava.event.SciJavaEvent

isContextual() - Method in class org.scijava.console.OutputEvent

Returns true if the output was produced outside of a specific SciJava Context.

isCtrlDown() - Method in class org.scijava.input.DefaultInputService

isCtrlDown() - Method in class org.scijava.input.InputModifiers

isCtrlDown() - Method in interface org.scijava.input.InputService

isCtrlReplacedWithMeta() - Static method in class org.scijava.input.Accelerator

isDebug() - Method in interface org.scijava.log.Logger

isDefaultUI(String) - Method in class org.scijava.ui.DefaultUIService

isDefaultUI(String) - Method in interface org.scijava.ui.UIService

Gets whether the UI with the given name (or class name) is the default one.

isDirectory() - Method in interface org.scijava.io.location.BrowsableLocation

Tests whether this location is a directory, meaning that it can have children.

isDirectory() - Method in class org.scijava.io.location.FileLocation

isDispatchThread() - Method in class org.scijava.thread.DefaultThreadService

isDispatchThread() - Method in interface org.scijava.thread.ThreadService

Gets whether the current thread is a dispatch thread for use with ThreadService.invoke(Runnable) and ThreadService.queue(Runnable).

isDisplaying(Object) - Method in interface org.scijava.display.Display

Tests whether the display is currently visualizing the given object.

isDone() - Method in class org.scijava.task.DefaultTask

isDone() - Method in interface org.scijava.task.Task

Checks whether the task has completed.

isDouble(Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.isDouble(java.lang.Class<?>) instead.

isDouble(Class<?>) - Static method in class org.scijava.util.Types

isEmpty() - Method in class org.scijava.display.AbstractDisplay

isEmpty() - Method in class org.scijava.menu.ShadowMenu

isEmpty() - Method in class org.scijava.object.ObjectIndex

isEmpty() - Method in class org.scijava.util.LastRecentlyUsed

isEnabled() - Method in class org.scijava.AbstractUIDetails

isEnabled() - Method in class org.scijava.command.DynamicCommandInfo

isEnabled() - Method in interface org.scijava.UIDetails

Gets whether the object should be enabled in the user interface.

isError() - Method in interface org.scijava.log.Logger

isExpectingMoreInput() - Method in class org.scijava.script.DefaultScriptInterpreter

isExpectingMoreInput() - Method in interface org.scijava.script.ScriptInterpreter

isFileLocationCachingEnabled() - Method in class org.scijava.download.DiskLocationCache

isFirstRun() - Method in class org.scijava.welcome.DefaultWelcomeService

isFirstRun() - Method in interface org.scijava.welcome.WelcomeService

Returns true iff this version of the running SJC application has not run before.

isFlag(LinkedList<String>) - Method in class org.scijava.console.AbstractConsoleArgument

Check if the given list of arguments starts with a flag that matches this ConsoleArgument.

isFloat(Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.isFloat(java.lang.Class<?>) instead.

isFloat(Class<?>) - Static method in class org.scijava.util.Types

isForeground() - Method in class org.scijava.platform.event.AppFocusEvent

isHeadless() - Method in class org.scijava.ui.DefaultUIService

isHeadless() - Method in interface org.scijava.ui.UIService

Gets whether the UI is running in headless mode (no UI).

isHidden() - Method in class org.scijava.platform.event.AppVisibleEvent

isInfo() - Method in interface org.scijava.log.Logger

isInitialized() - Method in class org.scijava.widget.DefaultWidgetModel

isInitialized() - Method in interface org.scijava.widget.WidgetModel

Gets the widget's initialization state.

isInjectable(Class<?>) - Method in class org.scijava.Context

Reports whether a parameter of the given type would be assigned a value as a consequence of calling Context.inject(Object).

isInput() - Method in class org.scijava.module.AbstractModuleItem

isInput() - Method in interface org.scijava.module.ModuleItem

Gets whether the item is a module input.

isInputResolved(String) - Method in class org.scijava.module.AbstractModule

isInputResolved(String) - Method in interface org.scijava.module.Module

Gets the resolution status of the input with the given name.

isInstance(Class<?>, Object) - Static method in class org.scijava.util.ReflectedUniverse

Returns whether the given object is compatible with the specified class for the purposes of reflection.

isInstance(Object, Class<?>) - Static method in class org.scijava.util.Types

Checks whether the given object can be cast to the specified type.

isInteger(Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.isInteger(java.lang.Class<?>) instead.

isInteger(Class<?>) - Static method in class org.scijava.util.Types

isInteractive() - Method in class org.scijava.command.CommandInfo

isInteractive() - Method in class org.scijava.command.DynamicCommandInfo

isInteractive() - Method in interface org.scijava.module.ModuleInfo

Gets whether the module is intended to be run interactively.

isKeyDown(KeyCode) - Method in class org.scijava.input.DefaultInputService

isKeyDown(KeyCode) - Method in interface org.scijava.input.InputService

isLabeled() - Method in interface org.scijava.widget.InputWidget

Returns true iff the widget should be labeled with the parameter label.

isLeaf() - Method in class org.scijava.menu.ShadowMenu

Returns true if this node has no children.

isLeftButtonDown() - Method in class org.scijava.input.InputModifiers

isLevel(int) - Method in interface org.scijava.log.Logger

isLinux() - Static method in class org.scijava.util.PlatformUtils

Whether the operating system is Linux-based.

isList() - Method in interface org.scijava.parse.Items

Returns true iff there are no named key/value pairs among the items.

isLittleEndian() - Method in interface org.scijava.io.handle.DataHandle

Returns true iff the stream's order is DataHandle.ByteOrder.LITTLE_ENDIAN.

isLong(Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.isLong(java.lang.Class<?>) instead.

isLong(Class<?>) - Static method in class org.scijava.util.Types

isMac() - Static method in class org.scijava.util.PlatformUtils

Whether the operating system is Mac-based.

isMap() - Method in interface org.scijava.parse.Items

Returns true iff all items are named key/value pairs.

isMessage() - Method in class org.scijava.widget.DefaultWidgetModel

isMessage() - Method in interface org.scijava.widget.InputWidget

Returns true iff the widget should be considered a read-only "message" rather than a bidirectional input widget.

isMessage() - Method in interface org.scijava.widget.WidgetModel

Gets whether the input is a message.

isMessageOnly() - Method in class org.scijava.widget.AbstractInputPanel

isMessageOnly() - Method in interface org.scijava.widget.InputPanel

Returns true if the input panel consists of only messages.

isMetaDown() - Method in class org.scijava.input.DefaultInputService

isMetaDown() - Method in class org.scijava.input.InputModifiers

isMetaDown() - Method in interface org.scijava.input.InputService

isMiddleButtonDown() - Method in class org.scijava.input.InputModifiers

isMultipleChoice() - Method in class org.scijava.widget.DefaultWidgetModel

isMultipleChoice() - Method in interface org.scijava.widget.WidgetModel

Gets whether the input provides a restricted set of choices.

isNullOrEmpty(String) - Static method in class org.scijava.util.StringUtils

isNumber(Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.isNumber(java.lang.Class<?>) instead.

isNumber(Class<?>) - Static method in class org.scijava.util.Types

isNumber() - Method in class org.scijava.widget.DefaultWidgetModel

isNumber() - Method in interface org.scijava.widget.WidgetModel

Gets whether the input is a number type (e.g., int, float or any Number implementation.

isOutput() - Method in class org.scijava.module.AbstractModuleItem

isOutput() - Method in interface org.scijava.module.ModuleItem

Gets whether the item is a module output.

isOutputResolved(String) - Method in class org.scijava.module.AbstractModule

isOutputResolved(String) - Method in interface org.scijava.module.Module

Gets the resolution status of the output with the given name.

isPersisted() - Method in class org.scijava.command.CommandModuleItem

isPersisted() - Method in class org.scijava.module.AbstractModuleItem

isPersisted() - Method in class org.scijava.module.DefaultMutableModuleItem

isPersisted() - Method in interface org.scijava.module.ModuleItem

Gets whether to remember the most recent value of the parameter.

isPopupTrigger() - Method in class org.scijava.display.event.input.MsButtonEvent

isPOSIX() - Static method in class org.scijava.util.PlatformUtils

Whether the operating system is POSIX compliant.

isRadioButton() - Method in class org.scijava.menu.ShadowMenu

Returns true if this node is a radio button.

isReadable() - Method in class org.scijava.download.MultiWriteHandle

isReadable() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle

isReadable() - Method in class org.scijava.io.handle.BytesHandle

isReadable() - Method in interface org.scijava.io.handle.DataHandle

Gets whether reading from this handle is supported.

isReadable() - Method in class org.scijava.io.handle.DummyHandle

isReadable() - Method in class org.scijava.io.handle.FileHandle

isReadable() - Method in class org.scijava.io.handle.ReadBufferDataHandle

isReadable() - Method in class org.scijava.io.handle.WriteBufferDataHandle

isReadOnly() - Method in interface org.scijava.io.ByteBank

isReadOnly() - Method in class org.scijava.io.nio.ByteBufferByteBank

isReady() - Method in class org.scijava.script.DefaultScriptInterpreter

isReady() - Method in interface org.scijava.script.ScriptInterpreter

isRequired() - Method in class org.scijava.command.CommandModuleItem

isRequired() - Method in class org.scijava.module.AbstractModuleItem

isRequired() - Method in class org.scijava.module.DefaultMutableModuleItem

isRequired() - Method in interface org.scijava.module.ModuleItem

Gets whether the item value must be specified (i.e., no default).

isResolved(String) - Method in interface org.scijava.module.Module

Deprecated.

Use Module.isInputResolved(String) instead.

isReturnValueAppended() - Method in class org.scijava.script.ScriptInfo

Gets whether the return value is appended as an additional output.

isReturnValueDeclared() - Method in class org.scijava.script.ScriptInfo

Deprecated.

Use ScriptInfo.isReturnValueAppended() instead.

isRightButtonDown() - Method in class org.scijava.input.InputModifiers

isRoot() - Method in class org.scijava.log.LogSource

isSelectable() - Method in class org.scijava.AbstractUIDetails

isSelectable() - Method in class org.scijava.command.DynamicCommandInfo

isSelectable() - Method in interface org.scijava.UIDetails

Gets whether the object can be selected (e.g., checking and unchecking its menu item) in the user interface.

isSelected() - Method in class org.scijava.AbstractUIDetails

isSelected() - Method in class org.scijava.command.DynamicCommandInfo

isSelected() - Method in interface org.scijava.UIDetails

Gets whether the object is selected (e.g., its menu item is checked) in the user interface.

isSeparatorNeeded(Tool, Tool) - Method in interface org.scijava.tool.ToolService

Returns true if the two specified tools should have a separator between them on the tool bar.

isShiftDown() - Method in class org.scijava.input.DefaultInputService

isShiftDown() - Method in class org.scijava.input.InputModifiers

isShiftDown() - Method in interface org.scijava.input.InputService

isShort(Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.isShort(java.lang.Class<?>) instead.

isShort(Class<?>) - Static method in class org.scijava.util.Types

isSleeping() - Method in class org.scijava.platform.event.AppSleepEvent

isStderr() - Method in class org.scijava.console.OutputEvent

Returns true of the source of the output is stderr.

isStdout() - Method in class org.scijava.console.OutputEvent

Returns true of the source of the output is stdout.

isStrict() - Method in class org.scijava.Context

isStyle(String) - Method in class org.scijava.widget.DefaultWidgetModel

isStyle(String) - Method in interface org.scijava.widget.WidgetModel

Gets whether the widget is the given style.

isSuccessful() - Method in class org.scijava.ui.dnd.event.DropEvent

Gets whether the drop operation was successful.

isSupported(MIMEType) - Method in class org.scijava.ui.dnd.DefaultDragAndDropData

isSupported(MIMEType) - Method in interface org.scijava.ui.dnd.DragAndDropData

Gets whether the data can be provided as an object with the given MIME type.

isSupported(Class<?>) - Method in interface org.scijava.ui.dnd.DragAndDropData

Gets whether the data can be provided as an object of the given Java class.

isTarget() - Method in interface org.scijava.platform.Platform

Determines whether the given platform is applicable to this runtime.

isText(Class<?>) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.isText(java.lang.Class<?>) instead.

isText(Class<?>) - Static method in class org.scijava.util.Types

isText() - Method in class org.scijava.widget.DefaultWidgetModel

isText() - Method in interface org.scijava.widget.WidgetModel

Gets whether the input is a text type (i.e., String, Character or char.

isToggle() - Method in class org.scijava.menu.ShadowMenu

Returns true if this node is selectable (checkbox or radio button).

isTrace() - Method in interface org.scijava.log.Logger

isType(Class<?>) - Method in class org.scijava.widget.DefaultWidgetModel

isType(Class<?>) - Method in interface org.scijava.widget.WidgetModel

Gets whether the input is compatible with the given type.

isUniqueName(String) - Method in class org.scijava.display.DefaultDisplayService

isUniqueName(String) - Method in interface org.scijava.display.DisplayService

Checks whether the given name is already taken by an existing display.

isValid() - Method in class org.scijava.command.CommandInfo

isValid() - Method in class org.scijava.command.DynamicCommandInfo

isValid() - Method in class org.scijava.module.MethodRef

isValid() - Method in interface org.scijava.module.ModuleInfo

isValid() - Method in interface org.scijava.Validated

Gets whether the object is completely valid (i.e., no problems during initialization).

isVisible() - Method in class org.scijava.AbstractUIDetails

isVisible() - Method in class org.scijava.platform.event.AppVisibleEvent

isVisible() - Method in class org.scijava.ui.AbstractUserInterface

isVisible() - Method in class org.scijava.ui.DefaultUIService

isVisible(String) - Method in class org.scijava.ui.DefaultUIService

isVisible() - Method in class org.scijava.ui.headless.HeadlessUI

isVisible() - Method in interface org.scijava.ui.UIService

Gets whether the default UI is visible.

isVisible(String) - Method in interface org.scijava.ui.UIService

Gets whether the UI with the given name or class name is visible.

isVisible() - Method in interface org.scijava.ui.UserInterface

Whether this UI is visible onscreen.

isVisible() - Method in interface org.scijava.UIDetails

Gets whether the object should be visible in the user interface.

isWaking() - Method in class org.scijava.platform.event.AppSleepEvent

isWarn() - Method in interface org.scijava.log.Logger

isWarning() - Method in class org.scijava.app.event.StatusEvent

Returns whether or not this is a warning event.

isWindows() - Static method in class org.scijava.util.PlatformUtils

Whether the operating system is Windows-based.

isWritable() - Method in class org.scijava.download.MultiWriteHandle

isWritable() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle

isWritable() - Method in class org.scijava.io.handle.BytesHandle

isWritable() - Method in interface org.scijava.io.handle.DataHandle

Gets whether writing to this handle is supported.

isWritable() - Method in class org.scijava.io.handle.DummyHandle

isWritable() - Method in class org.scijava.io.handle.FileHandle

Item - Interface in org.scijava.parse

An item from the list of parsed items; i.e.: a name/value pair.

ItemIO - Enum in org.scijava

Defines the input/output type of a module.

Items - Interface in org.scijava.parse

An ordered list of items, some of which might be key/value pairs, and some of which might be raw values.

ItemVisibility - Enum in org.scijava

Defines the "visibility" of a parameter.

iterator() - Method in class org.scijava.annotations.Index

iterator() - Method in class org.scijava.display.AbstractDisplay

iterator() - Method in class org.scijava.menu.ShadowMenu

iterator() - Method in class org.scijava.object.ObjectIndex

iterator() - Method in class org.scijava.util.IteratorPlus

iterator() - Method in class org.scijava.util.LastRecentlyUsed

Returns an Iterator.

IteratorPlus<E> - Class in org.scijava.util

A class that provides more thorough support for iteration.

IteratorPlus(Iterable<E>) - Constructor for class org.scijava.util.IteratorPlus

IteratorPlus(Enumeration<E>) - Constructor for class org.scijava.util.IteratorPlus

IteratorPlus(Iterator<E>) - Constructor for class org.scijava.util.IteratorPlus

IVORY - Static variable in class org.scijava.util.Colors

J

javaVendor() - Method in interface org.scijava.platform.Platform

Java Runtime Environment vendor to match.

javaVersion() - Method in interface org.scijava.platform.Platform

Minimum required Java Runtime Environment version.

K

KeyCode - Enum in org.scijava.input

A UI-independent enumeration of keyboard key codes.

KHAKI - Static variable in class org.scijava.util.Colors

KyEvent - Class in org.scijava.display.event.input

An event indicating keyboard activity in a display.

KyEvent(Display<?>, InputModifiers, int, int, char, KeyCode) - Constructor for class org.scijava.display.event.input.KyEvent

KyPressedEvent - Class in org.scijava.display.event.input

An event indicating a keyboard key was pressed in a display.

KyPressedEvent(Display<?>, InputModifiers, int, int, char, KeyCode) - Constructor for class org.scijava.display.event.input.KyPressedEvent

KyReleasedEvent - Class in org.scijava.display.event.input

An event indicating a keyboard key was released in a display.

KyReleasedEvent(Display<?>, InputModifiers, int, int, char, KeyCode) - Constructor for class org.scijava.display.event.input.KyReleasedEvent

KyTypedEvent - Class in org.scijava.display.event.input

An event indicating a keyboard key was typed (i.e., pressed and released) in a display.

KyTypedEvent(Display<?>, InputModifiers, int, int, char, KeyCode) - Constructor for class org.scijava.display.event.input.KyTypedEvent

L

lang(String) - Method in class org.scijava.script.ScriptREPL

Creates a new ScriptInterpreter to interpret statements, preserving existing variables from the previous interpreter.

lang(ScriptLanguage) - Method in class org.scijava.script.ScriptREPL

Creates a new ScriptInterpreter to interpret statements, preserving existing variables from the previous interpreter.

langs() - Method in class org.scijava.script.ScriptREPL

LAST - Static variable in class org.scijava.Priority

Priority for items that must be sorted last.

LAST_PRIORITY - Static variable in class org.scijava.Priority

Deprecated.

Use Priority.LAST instead.

lastIndexOf(Object) - Method in class org.scijava.display.AbstractDisplay

lastIndexOf(boolean) - Method in class org.scijava.util.BoolArray

lastIndexOf(Object) - Method in class org.scijava.util.BoolArray

lastIndexOf(byte) - Method in class org.scijava.util.ByteArray

lastIndexOf(Object) - Method in class org.scijava.util.ByteArray

lastIndexOf(char) - Method in class org.scijava.util.CharArray

lastIndexOf(Object) - Method in class org.scijava.util.CharArray

lastIndexOf(double) - Method in class org.scijava.util.DoubleArray

lastIndexOf(Object) - Method in class org.scijava.util.DoubleArray

lastIndexOf(float) - Method in class org.scijava.util.FloatArray

lastIndexOf(Object) - Method in class org.scijava.util.FloatArray

lastIndexOf(int) - Method in class org.scijava.util.IntArray

lastIndexOf(Object) - Method in class org.scijava.util.IntArray

lastIndexOf(long) - Method in class org.scijava.util.LongArray

lastIndexOf(Object) - Method in class org.scijava.util.LongArray

lastIndexOf(Object) - Method in class org.scijava.util.ObjectArray

lastIndexOf(short) - Method in class org.scijava.util.ShortArray

lastIndexOf(Object) - Method in class org.scijava.util.ShortArray

lastModified() - Method in class org.scijava.download.MultiWriteHandle

lastModified() - Method in interface org.scijava.io.handle.DataHandle

Gets the last modified timestamp of the location.

lastModified() - Method in class org.scijava.io.handle.FileHandle

LastRecentlyUsed<T> - Class in org.scijava.util

A simple container for N last-recently-used items.

LastRecentlyUsed(int) - Constructor for class org.scijava.util.LastRecentlyUsed

launch(String...) - Method in class org.scijava.AbstractGateway

launch(String...) - Method in interface org.scijava.Gateway

Perform launch operations associated with this gateway.

LAVENDER - Static variable in class org.scijava.util.Colors

LAVENDERBLUSH - Static variable in class org.scijava.util.Colors

LAWNGREEN - Static variable in class org.scijava.util.Colors

LazyObjects<T> - Interface in org.scijava.object

Interface for objects created lazily.

LEFT_BUTTON - Static variable in class org.scijava.display.event.input.MsButtonEvent

LegacyReader - Class in org.scijava.annotations.legacy

Reads legacy annotation indexes.

LegacyReader(InputStream) - Constructor for class org.scijava.annotations.legacy.LegacyReader

LEMONCHIFFON - Static variable in class org.scijava.util.Colors

len - Variable in class org.scijava.util.LineOutputStream

length() - Method in class org.scijava.download.MultiWriteHandle

length() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle

length() - Method in class org.scijava.io.handle.BytesHandle

length() - Method in interface org.scijava.io.handle.DataHandle

Returns the length of the data in bytes.

length() - Method in class org.scijava.io.handle.DummyHandle

length() - Method in class org.scijava.io.handle.FileHandle

length() - Method in class org.scijava.io.handle.WriteBufferDataHandle

level() - Method in class org.scijava.log.LogMessage

Log level of the message.

LIGHTBLUE - Static variable in class org.scijava.util.Colors

LIGHTCORAL - Static variable in class org.scijava.util.Colors

LIGHTCYAN - Static variable in class org.scijava.util.Colors

LIGHTGOLDENRODYELLOW - Static variable in class org.scijava.util.Colors

LIGHTGRAY - Static variable in class org.scijava.util.Colors

LIGHTGREEN - Static variable in class org.scijava.util.Colors

LIGHTGREY - Static variable in class org.scijava.util.Colors

LIGHTPINK - Static variable in class org.scijava.util.Colors

LIGHTSALMON - Static variable in class org.scijava.util.Colors

LIGHTSEAGREEN - Static variable in class org.scijava.util.Colors

LIGHTSKYBLUE - Static variable in class org.scijava.util.Colors

LIGHTSLATEGRAY - Static variable in class org.scijava.util.Colors

LIGHTSLATEGREY - Static variable in class org.scijava.util.Colors

LIGHTSTEELBLUE - Static variable in class org.scijava.util.Colors

LIGHTYELLOW - Static variable in class org.scijava.util.Colors

LIME - Static variable in class org.scijava.util.Colors

LIMEGREEN - Static variable in class org.scijava.util.Colors

limitPath(String, int) - Static method in class org.scijava.util.FileUtils

Compacts a path into a given number of characters.

LINEN - Static variable in class org.scijava.util.Colors

LineOutputStream - Class in org.scijava.util

This class hides a line-based output behind an OutputStream.

LineOutputStream() - Constructor for class org.scijava.util.LineOutputStream

LIST_BOX_STYLE - Static variable in interface org.scijava.widget.ChoiceWidget

Widget style for list boxes.

listContents(URL) - Static method in class org.scijava.util.FileUtils

Recursively lists the contents of the referenced directory.

listContents(URL, boolean, boolean) - Static method in class org.scijava.util.FileUtils

Lists all contents of the referenced directory.

ListDragAndDropHandler - Class in org.scijava.ui.dnd

Drag-and-drop handler for lists of objects.

ListDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.ListDragAndDropHandler

ListEvent<T> - Class in org.scijava.object.event

An event indicating something has happened to a list of items.

ListEvent(T) - Constructor for class org.scijava.object.event.ListEvent

ListEvent(Collection<? extends T>) - Constructor for class org.scijava.object.event.ListEvent

listIterator() - Method in class org.scijava.display.AbstractDisplay

listIterator(int) - Method in class org.scijava.display.AbstractDisplay

ListUtils - Class in org.scijava.util

Useful methods for working with Lists.

load(Class<A>) - Static method in class org.scijava.annotations.Index

Loads the index of all classes annotated with the specified annotation.

load(Class<A>, ClassLoader) - Static method in class org.scijava.annotations.Index

Loads the index of all classes annotated with the specified annotation.

load(ModuleItem<T>) - Method in class org.scijava.module.DefaultModuleService

load(ModuleItem<T>) - Method in interface org.scijava.module.ModuleService

Returns the value, if any, stored in the PrefService for the given ModuleItem.

load() - Method in class org.scijava.options.OptionsPlugin

Loads option values from persistent storage.

load(String) - Static method in class org.scijava.util.Types

Loads the class with the given name, using the current thread's context class loader, or null if it cannot be loaded.

load(String, ClassLoader) - Static method in class org.scijava.util.Types

Loads the class with the given name, using the specified ClassLoader, or null if it cannot be loaded.

load(String, boolean) - Static method in class org.scijava.util.Types

Loads the class with the given name, using the current thread's context class loader.

load(String, ClassLoader, boolean) - Static method in class org.scijava.util.Types

Loads the class with the given name, using the specified ClassLoader, or null if it cannot be loaded.

loadChecksum(Location) - Method in class org.scijava.download.DiskLocationCache

loadChecksum(Location) - Method in interface org.scijava.download.LocationCache

Loads the checksum value which corresponds to the cached location.

loadClass() - Method in class org.scijava.command.CommandInfo

loadClass() - Method in interface org.scijava.Instantiable

Loads the class corresponding to the objects that are created by Instantiable.createInstance().

loadClass() - Method in class org.scijava.plugin.PluginInfo

loadClass(String) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.load(String) instead.

loadClass(String, ClassLoader) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.load(String, ClassLoader) instead.

loadClass(String, boolean) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.load(String, boolean) instead.

loadClass(String, ClassLoader, boolean) - Static method in class org.scijava.util.ClassUtils

Deprecated.

Use Types.load(String, ClassLoader, boolean) instead.

loadDelegateClass() - Method in class org.scijava.command.CommandInfo

loadDelegateClass() - Method in interface org.scijava.module.ModuleInfo

Loads the class containing the module's actual implementation.

loadDelegateClass() - Method in interface org.scijava.module.MutableModuleInfo

loadDelegateClass() - Method in class org.scijava.script.ScriptInfo

LoadInputsPreprocessor - Class in org.scijava.module.process

A preprocessor for loading populated input values from persistent storage.

LoadInputsPreprocessor() - Constructor for class org.scijava.module.process.LoadInputsPreprocessor

loadService(Class<S>) - Method in class org.scijava.service.ServiceHelper

Obtains a service compatible with the given class, instantiating it (and registering it in the index) if necessary.

loadServices() - Method in class org.scijava.service.ServiceHelper

Ensures all candidate service classes are registered in the index, locating and instantiating compatible services as needed.

loadValue() - Method in class org.scijava.module.AbstractModuleItem

Deprecated.

loadValue() - Method in interface org.scijava.module.ModuleItem

Deprecated.

loadXML(InputStream) - Static method in class org.scijava.util.XML

Loads an XML document from the given input stream.

loadXML(String) - Static method in class org.scijava.util.XML

Loads an XML document from the given input stream.

Locatable - Interface in org.scijava

An object whose location is defined by a URL string.

Location - Interface in org.scijava.io.location

A location is a data descriptor, such as a file on disk, a remote URL, or a database connection.

location(Class<?>) - Static method in class org.scijava.util.Types

Gets the base location of the given class.

location(Class<?>, boolean) - Static method in class org.scijava.util.Types

Gets the base location of the given class.

LocationCache - Interface in org.scijava.download

An object which knows how to convert a slow (typically remote) Location to a faster (typically local) one.

LocationResolver - Interface in org.scijava.io.location

LocationResolver plugins allow resolving an URI to a Location.

LocationService - Interface in org.scijava.io.location

A service that allows resolving of URIs to Locations, using LocationResolver plugins for translation.

log() - Method in class org.scijava.AbstractGateway

log() - Method in class org.scijava.command.InteractiveCommand

log() - Method in interface org.scijava.Gateway

Gets this application context's LogService.

log() - Method in interface org.scijava.log.Logged

Gets the LogService to use when logging activities.

log(int, Object) - Method in interface org.scijava.log.Logger

Logs a message.

log(int, Throwable) - Method in interface org.scijava.log.Logger

Logs an exception.

log(int, Object, Throwable) - Method in interface org.scijava.log.Logger

Logs a message with an exception.

log() - Method in interface org.scijava.plugin.RichPlugin

log() - Method in class org.scijava.script.AbstractScriptEngine

LOG_LEVEL_BY_SOURCE_PROPERTY - Static variable in interface org.scijava.log.LogService

LOG_LEVEL_PROPERTY - Static variable in interface org.scijava.log.LogService

System property to set for overriding the default logging level.

Logged - Interface in org.scijava.log

Interface for the objects which want to log their activities.

Logger - Interface in org.scijava.log

Interface for objects which can produce log messages.

LoggerPreprocessor - Class in org.scijava.module.process

This PreprocessorPlugin affects Modules with a single Parameter of type Logger.

LoggerPreprocessor() - Constructor for class org.scijava.module.process.LoggerPreprocessor

LogLevel - Class in org.scijava.log

Constants for specifying a logger's level of verbosity.

logLevel() - Method in class org.scijava.log.LogSource

LogListener - Interface in org.scijava.log

Callback function used by Logger.

LogMessage - Class in org.scijava.log

A log message broadcast by a Logger.

LogMessage(LogSource, int, Object, Throwable) - Constructor for class org.scijava.log.LogMessage

LogMessage(LogSource, int, Object) - Constructor for class org.scijava.log.LogMessage

LogService - Interface in org.scijava.log

Interface for the logging service.

LogSource - Class in org.scijava.log

Identifies where a LogMessage came from.

LongArray - Class in org.scijava.util

An extensible array of long elements.

LongArray() - Constructor for class org.scijava.util.LongArray

Constructs an extensible array of longs, backed by a fixed-size array.

LongArray(int) - Constructor for class org.scijava.util.LongArray

Constructs an extensible array of longs, backed by a fixed-size array.

LongArray(long[]) - Constructor for class org.scijava.util.LongArray

Constructs an extensible array of longs, backed by the given fixed-size array.

LongArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.LongArrayUnwrapper

LongArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.LongArrayWrapper

LongToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.LongToBigDecimalConverter

LongToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.LongToBigIntegerConverter

lookup(T) - Method in class org.scijava.util.LastRecentlyUsed

Looks up the index for a given entry.

lookupClass(String) - Method in class org.scijava.script.DefaultScriptService

lookupClass(String) - Method in interface org.scijava.script.ScriptService

TODO

loop() - Method in class org.scijava.script.ScriptREPL

Starts a Read-Eval-Print-Loop from the standard input stream, returning when the loop terminates.

loop(InputStream) - Method in class org.scijava.script.ScriptREPL

Starts a Read-Eval-Print-Loop from the given input stream, returning when the loop terminates.

LOW - Static variable in class org.scijava.Priority

Priority for items that prefer to be sorted later.

LOW_PRIORITY - Static variable in class org.scijava.Priority

Deprecated.

Use Priority.LOW instead.

M

MAGENTA - Static variable in class org.scijava.util.Colors

main() - Method in class org.scijava.AbstractGateway

main(String[]) - Static method in class org.scijava.annotations.AnnotationCombiner

main(String...) - Static method in class org.scijava.annotations.EclipseHelper

Updates the annotation index in the current Eclipse project.

main() - Method in interface org.scijava.Gateway

Gets this application context's MainService.

main(String...) - Static method in class org.scijava.script.ScriptREPL

main(String[]) - Static method in class org.scijava.util.CombineAnnotations

Deprecated.

Use AnnotationCombiner.main(String[]) instead.

main(String[]) - Static method in class org.scijava.util.MersenneTwisterFast

Tests the code.

main(String...) - Static method in class org.scijava.util.MetaInfCombiner

main(String[]) - Static method in class org.scijava.util.MirrorWebsite

main(String[]) - Static method in class org.scijava.util.ReflectedUniverse

Allows exploration of a reflected universe in an interactive environment.

main(String...) - Static method in class org.scijava.util.ServiceCombiner

MainArgument - Class in org.scijava.main.console

Handles the --main command line argument, which launches an alternative main class.

MainArgument() - Constructor for class org.scijava.main.console.MainArgument

MainCodeRunner - Class in org.scijava.main.run

Executes the given class's main method.

MainCodeRunner() - Constructor for class org.scijava.main.run.MainCodeRunner

MainService - Interface in org.scijava.main

Interface for services which manage dynamic execution of main methods.

MainService.Main - Interface in org.scijava.main

Data structure containing main class and argument values.

makeArray(byte[], int, boolean, boolean) - Static method in class org.scijava.util.Bytes

Converts a byte array to the appropriate 1D primitive type array.

makeArray2D(byte[], int, boolean, boolean, int) - Static method in class org.scijava.util.Bytes

Converts a byte array to the appropriate 2D primitive type array.

makeSigned(byte[]) - Static method in class org.scijava.util.Bytes

makeSigned(short[]) - Static method in class org.scijava.util.Bytes

makeSigned(int[]) - Static method in class org.scijava.util.Bytes

Manifest - Class in org.scijava.util

Helper class for working with JAR manifests.

map() - Static method in class org.scijava.util.Colors

Gets the table of all preset colors.

mark(int) - Method in class org.scijava.io.handle.DataHandleInputStream

markSupported() - Method in class org.scijava.io.handle.DataHandleInputStream

MAROON - Static variable in class org.scijava.util.Colors

matchVersionedFilename(String) - Static method in class org.scijava.util.FileUtils

Deprecated.

see FileUtils.stripFilenameVersion(String)

MAX_FILES_SHOWN - Static variable in interface org.scijava.io.RecentFileService

MAX_SEARCH_SIZE - Static variable in interface org.scijava.io.handle.DataHandle

Default bound on bytes to search when searching through the stream.

md5(byte[]) - Static method in class org.scijava.util.DigestUtils

Gets the given byte array's MD5 checksum, or null if unavailable.

MEDIUMAQUAMARINE - Static variable in class org.scijava.util.Colors

MEDIUMBLUE - Static variable in class org.scijava.util.Colors

MEDIUMORCHID - Static variable in class org.scijava.util.Colors

MEDIUMPURPLE - Static variable in class org.scijava.util.Colors

MEDIUMSEAGREEN - Static variable in class org.scijava.util.Colors

MEDIUMSLATEBLUE - Static variable in class org.scijava.util.Colors

MEDIUMSPRINGGREEN - Static variable in class org.scijava.util.Colors

MEDIUMTURQUOISE - Static variable in class org.scijava.util.Colors

MEDIUMVIOLETRED - Static variable in class org.scijava.util.Colors

menu() - Method in class org.scijava.AbstractGateway

menu() - Method in interface org.scijava.Gateway

Gets this application context's MenuService.

Menu - Annotation Type in org.scijava.plugin

One item of a Plugin's menu path.

MenuConstants - Class in org.scijava.menu

Useful constants when defining application menu entries.

MenuCreator<T> - Interface in org.scijava.menu

A menu builder responsible for translating a ShadowMenu structure into a menu for a particular user interface.

MenuEntry - Class in org.scijava

One component of a menu path, for use with MenuPath.

MenuEntry(String) - Constructor for class org.scijava.MenuEntry

MenuEntry(String, double) - Constructor for class org.scijava.MenuEntry

MenuEntry(String, double, char, Accelerator, String) - Constructor for class org.scijava.MenuEntry

MenuEvent - Class in org.scijava.menu.event

An event indicating something has happened to the MenuService's ShadowMenu.

MenuEvent(ShadowMenu) - Constructor for class org.scijava.menu.event.MenuEvent

MenuEvent(Collection<? extends ShadowMenu>) - Constructor for class org.scijava.menu.event.MenuEvent

MenuPath - Class in org.scijava

A path in a hierarchical menu structure, for use with UIDetails.

MenuPath() - Constructor for class org.scijava.MenuPath

Creates an empty menu path.

MenuPath(Collection<? extends MenuEntry>) - Constructor for class org.scijava.MenuPath

Creates a menu path with the given entries.

MenuPath(String) - Constructor for class org.scijava.MenuPath

Creates a menu path with entries parsed from the given string.

MenuPath(String, String) - Constructor for class org.scijava.MenuPath

Creates a menu path with entries parsed from the given string, splitting on the specified separator.

MenuPath(String, String, boolean) - Constructor for class org.scijava.MenuPath

Creates a menu path with entries parsed from the given string, splitting on the specified separator, and trimming whitespace if indicated.

MenusAddedEvent - Class in org.scijava.menu.event

An event indicating one or more menu items have been added to the MenuService's ShadowMenu.

MenusAddedEvent(ShadowMenu) - Constructor for class org.scijava.menu.event.MenusAddedEvent

MenusAddedEvent(Collection<? extends ShadowMenu>) - Constructor for class org.scijava.menu.event.MenusAddedEvent

MenuService - Interface in org.scijava.menu

Interface for service that tracks the application's menu structure.

MenusRemovedEvent - Class in org.scijava.menu.event

An event indicating one or more menu items have been removed from the MenuService's ShadowMenu.

MenusRemovedEvent(ShadowMenu) - Constructor for class org.scijava.menu.event.MenusRemovedEvent

MenusRemovedEvent(Collection<? extends ShadowMenu>) - Constructor for class org.scijava.menu.event.MenusRemovedEvent

MenusUpdatedEvent - Class in org.scijava.menu.event

An event indicating one or more menu items have been adjusted in the MenuService's ShadowMenu.

MenusUpdatedEvent(ShadowMenu) - Constructor for class org.scijava.menu.event.MenusUpdatedEvent

MenusUpdatedEvent(Collection<? extends ShadowMenu>) - Constructor for class org.scijava.menu.event.MenusUpdatedEvent

merge(String, AbstractIndexWriter.StreamFactory) - Method in class org.scijava.annotations.AbstractIndexWriter

Merges an existing annotation index into the currently-generated one.

MersenneTwisterFast - Class in org.scijava.util

MersenneTwister and MersenneTwisterFast

MersenneTwisterFast() - Constructor for class org.scijava.util.MersenneTwisterFast

Constructor using the default seed.

MersenneTwisterFast(long) - Constructor for class org.scijava.util.MersenneTwisterFast

Constructor using a given seed.

MersenneTwisterFast(int[]) - Constructor for class org.scijava.util.MersenneTwisterFast

Constructor using an array of integers as seed.

messageLogged(LogMessage) - Method in class org.scijava.log.AbstractLogService

messageLogged(LogMessage) - Method in class org.scijava.log.DefaultLogger

messageLogged(LogMessage) - Method in interface org.scijava.log.LogListener

This method is normally called from many threads in parallel.

messageLogged(LogMessage) - Method in class org.scijava.log.StderrLogService

MessageWidget<U> - Interface in org.scijava.widget

Widget interface for message labels.

MetaInfCombiner - Class in org.scijava.util

Accumulates information from the class path to make META-INF/ files appropriate for an uber jar.

MetaInfCombiner() - Constructor for class org.scijava.util.MetaInfCombiner

method(Class<?>, String, Class<?>...) - Static method in class org.scijava.util.Types

Gets the method with the specified name and argument types, of the given class, or superclass thereof.

MethodCallException - Exception in org.scijava.module

An exception thrown when a reflective method execution fails.

MethodCallException() - Constructor for exception org.scijava.module.MethodCallException

MethodCallException(String) - Constructor for exception org.scijava.module.MethodCallException

MethodCallException(String, Throwable) - Constructor for exception org.scijava.module.MethodCallException

MethodCallException(Throwable) - Constructor for exception org.scijava.module.MethodCallException

methodParamTypes(Method, Class<?>) - Static method in class org.scijava.util.Types

As Types.fieldType(Field, Class), but with respect to the parameter types of the given Method rather than a Field.

MethodRef - Class in org.scijava.module

A reference to a Method, which can be invoked at will.

MethodRef(Class<?>, String, Class<?>...) - Constructor for class org.scijava.module.MethodRef

methodReturnType(Method, Class<?>) - Static method in class org.scijava.util.Types

As Types.fieldType(Field, Class), but with respect to the return type of the given Method rather than a Field.

MIDDLE_BUTTON - Static variable in class org.scijava.display.event.input.MsButtonEvent

MIDNIGHTBLUE - Static variable in class org.scijava.util.Colors

MIMEType - Class in org.scijava.ui.dnd

A Multipurpose Internet Mail Extension (MIME) type, as defined in RFC 2045 and 2046.

MIMEType(String) - Constructor for class org.scijava.ui.dnd.MIMEType

Constructs a new MIME type object from the given MIME type string.

MIMEType(String, Class<?>) - Constructor for class org.scijava.ui.dnd.MIMEType

Constructs a new MIME type object from the given MIME type string.

MINTCREAM - Static variable in class org.scijava.util.Colors

mirror(String) - Method in class org.scijava.util.MirrorWebsite

MirrorWebsite - Class in org.scijava.util

This program mirrors a given website.

MirrorWebsite(String, File, int, long) - Constructor for class org.scijava.util.MirrorWebsite

MiscUtils - Class in org.scijava.util

Miscellaneous utility methods.

MISTYROSE - Static variable in class org.scijava.util.Colors

MOCCASIN - Static variable in class org.scijava.util.Colors

module() - Method in class org.scijava.AbstractGateway

module() - Method in interface org.scijava.Gateway

Gets this application context's ModuleService.

Module - Interface in org.scijava.module

A module is an encapsulated piece of functionality with inputs and outputs.

moduleCalled - Variable in class org.scijava.script.InvocationObject

Deprecated.

ModuleCanceledEvent - Class in org.scijava.module.event

An event indicating a Module execution has been canceled.

ModuleCanceledEvent(Module) - Constructor for class org.scijava.module.event.ModuleCanceledEvent

ModuleCanceledEvent(Module, String) - Constructor for class org.scijava.module.event.ModuleCanceledEvent

ModuleCanceledException - Exception in org.scijava.module

An exception thrown when a module execution is canceled.

ModuleCanceledException() - Constructor for exception org.scijava.module.ModuleCanceledException

ModuleCanceledException(String) - Constructor for exception org.scijava.module.ModuleCanceledException

ModuleCanceledException(String, Throwable) - Constructor for exception org.scijava.module.ModuleCanceledException

ModuleCanceledException(Throwable) - Constructor for exception org.scijava.module.ModuleCanceledException

ModuleCodeRunner - Class in org.scijava.module.run

Runs the given Identifiable SciJava module.

ModuleCodeRunner() - Constructor for class org.scijava.module.run.ModuleCodeRunner

ModuleCommand - Class in org.scijava.command

A command which implements Module directly (rather than using the CommandModule adapter class).

ModuleCommand() - Constructor for class org.scijava.command.ModuleCommand

ModuleEvent - Class in org.scijava.module.event

An event indicating something has happened to a module.

ModuleEvent(Module) - Constructor for class org.scijava.module.event.ModuleEvent

ModuleException - Exception in org.scijava.module

An exception thrown when something goes wrong with a module.

ModuleException() - Constructor for exception org.scijava.module.ModuleException

ModuleException(String) - Constructor for exception org.scijava.module.ModuleException

ModuleException(String, Throwable) - Constructor for exception org.scijava.module.ModuleException

ModuleException(Throwable) - Constructor for exception org.scijava.module.ModuleException

ModuleExecutedEvent - Class in org.scijava.module.event

An event indicating a module has just been executed.

ModuleExecutedEvent(Module) - Constructor for class org.scijava.module.event.ModuleExecutedEvent

ModuleExecutingEvent - Class in org.scijava.module.event

An event indicating a module is about to be executed.

ModuleExecutingEvent(Module) - Constructor for class org.scijava.module.event.ModuleExecutingEvent

ModuleExecutionEvent - Class in org.scijava.module.event

An event relating to execution of a Module.

ModuleExecutionEvent(Module) - Constructor for class org.scijava.module.event.ModuleExecutionEvent

ModuleFinishedEvent - Class in org.scijava.module.event

An event indicating a module execution has been completed.

ModuleFinishedEvent(Module) - Constructor for class org.scijava.module.event.ModuleFinishedEvent

ModuleIndex - Class in org.scijava.module

Data structure for managing registered modules.

ModuleIndex() - Constructor for class org.scijava.module.ModuleIndex

ModuleInfo - Interface in org.scijava.module

A ModuleInfo object encapsulates metadata about a particular Module (but not a specific instance of it).

ModuleItem<T> - Interface in org.scijava.module

A ModuleItem represents metadata about one input or output of a module.

ModulePostprocessEvent - Class in org.scijava.module.event

An event indicating a ModulePostprocessor has been invoked as part of a module execution.

ModulePostprocessEvent(Module, ModulePostprocessor) - Constructor for class org.scijava.module.event.ModulePostprocessEvent

ModulePostprocessor - Interface in org.scijava.module.process

A module postprocessor defines a step that occurs immediately following the actual execution of a Module.

ModulePreprocessEvent - Class in org.scijava.module.event

An event indicating a ModulePreprocessor has been invoked as part of a module execution.

ModulePreprocessEvent(Module, ModulePreprocessor) - Constructor for class org.scijava.module.event.ModulePreprocessEvent

ModulePreprocessor - Interface in org.scijava.module.process

A module preprocessor defines a step that occurs just prior to the actual execution of a Module.

ModuleProcessEvent - Class in org.scijava.module.event

An event indicating a ModuleProcessor has been invoked as part of a module execution.

ModuleProcessEvent(Module, ModuleProcessor) - Constructor for class org.scijava.module.event.ModuleProcessEvent

ModuleProcessor - Interface in org.scijava.module.process

A module processor defines some sort of processing that occurs on a module instance, typically immediately preceding (see ModulePreprocessor) or following (see ModulePostprocessor) the module execution.

ModuleRunner - Class in org.scijava.module

Helper class for executing a Module, including pre- and post-processing and event notification.

ModuleRunner(Context, Module, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>) - Constructor for class org.scijava.module.ModuleRunner

ModulesAddedEvent - Class in org.scijava.module.event

An event indicating one or more modules have been added to the ModuleService.

ModulesAddedEvent(ModuleInfo) - Constructor for class org.scijava.module.event.ModulesAddedEvent

ModulesAddedEvent(Collection<? extends ModuleInfo>) - Constructor for class org.scijava.module.event.ModulesAddedEvent

moduleService() - Method in interface org.scijava.command.CommandService

moduleService() - Method in class org.scijava.command.DefaultCommandService

ModuleService - Interface in org.scijava.module

Interface for service that tracks and executes available modules.

ModulesListEvent - Class in org.scijava.module.event

An event indicating something has happened to the list of plugins registered with the ModuleService.

ModulesListEvent(ModuleInfo) - Constructor for class org.scijava.module.event.ModulesListEvent

ModulesListEvent(Collection<? extends ModuleInfo>) - Constructor for class org.scijava.module.event.ModulesListEvent

ModulesRemovedEvent - Class in org.scijava.module.event

An event indicating one or more modules have been removed from the ModuleService.

ModulesRemovedEvent(ModuleInfo) - Constructor for class org.scijava.module.event.ModulesRemovedEvent

ModulesRemovedEvent(Collection<? extends ModuleInfo>) - Constructor for class org.scijava.module.event.ModulesRemovedEvent

ModuleStartedEvent - Class in org.scijava.module.event

An event indicating a module execution has begun.

ModuleStartedEvent(Module) - Constructor for class org.scijava.module.event.ModuleStartedEvent

ModulesUpdatedEvent - Class in org.scijava.module.event

An event indicating one or more module details have been updated.

ModulesUpdatedEvent(ModuleInfo) - Constructor for class org.scijava.module.event.ModulesUpdatedEvent

ModulesUpdatedEvent(Collection<? extends ModuleInfo>) - Constructor for class org.scijava.module.event.ModulesUpdatedEvent

MORE_INPUT_PENDING - Static variable in interface org.scijava.script.ScriptInterpreter

A special object returned by ScriptInterpreter.interpret(String) when the interpreter is expecting additional input before finishing the evaluation.

MouseCursor - Enum in org.scijava.input

A UI-independent enumeration of mouse cursors.

MsButtonEvent - Class in org.scijava.display.event.input

An event indicating mouse button activity in a display.

MsButtonEvent(Display<?>, InputModifiers, int, int, int, int, boolean) - Constructor for class org.scijava.display.event.input.MsButtonEvent

MsClickedEvent - Class in org.scijava.display.event.input

An event indicating a mouse button was clicked in a display.

MsClickedEvent(Display<?>, InputModifiers, int, int, int, int, boolean) - Constructor for class org.scijava.display.event.input.MsClickedEvent

MsDraggedEvent - Class in org.scijava.display.event.input

An event indicating a mouse was dragged in a display.

MsDraggedEvent(Display<?>, InputModifiers, int, int, int, int, boolean) - Constructor for class org.scijava.display.event.input.MsDraggedEvent

MsEnteredEvent - Class in org.scijava.display.event.input

An event indicating a mouse cursor entered a display.

MsEnteredEvent(Display<?>, InputModifiers, int, int) - Constructor for class org.scijava.display.event.input.MsEnteredEvent

MsEvent - Class in org.scijava.display.event.input

An event indicating mouse activity in a display.

MsEvent(Display<?>, InputModifiers, int, int) - Constructor for class org.scijava.display.event.input.MsEvent

MsExitedEvent - Class in org.scijava.display.event.input

An event indicating a mouse cursor exited a display.

MsExitedEvent(Display<?>, InputModifiers, int, int) - Constructor for class org.scijava.display.event.input.MsExitedEvent

MsMovedEvent - Class in org.scijava.display.event.input

An event indicating a mouse was moved in a display.

MsMovedEvent(Display<?>, InputModifiers, int, int) - Constructor for class org.scijava.display.event.input.MsMovedEvent

MsPressedEvent - Class in org.scijava.display.event.input

An event indicating a mouse button was pressed in a display.

MsPressedEvent(Display<?>, InputModifiers, int, int, int, int, boolean) - Constructor for class org.scijava.display.event.input.MsPressedEvent

MsReleasedEvent - Class in org.scijava.display.event.input

An event indicating a mouse button was released in a display.

MsReleasedEvent(Display<?>, InputModifiers, int, int, int, int, boolean) - Constructor for class org.scijava.display.event.input.MsReleasedEvent

MsWheelEvent - Class in org.scijava.display.event.input

An event indicating a mouse wheel was moved in a display.

MsWheelEvent(Display<?>, InputModifiers, int, int, int) - Constructor for class org.scijava.display.event.input.MsWheelEvent

MultiOutputStream - Class in org.scijava.console

A MultiOutputStream is a collection of constituent OutputStream objects, to which all output is forwarded.

MultiOutputStream(OutputStream...) - Constructor for class org.scijava.console.MultiOutputStream

Forwards output to a list of output streams.

MultiPrintStream - Class in org.scijava.console

A PrintStream that wraps a MultiOutputStream.

MultiPrintStream(OutputStream) - Constructor for class org.scijava.console.MultiPrintStream

MultiWriteHandle - Class in org.scijava.download

DataHandle plugin for writing to multiple DataHandles.

MultiWriteHandle(DataHandle<?>...) - Constructor for class org.scijava.download.MultiWriteHandle

MutableModule - Interface in org.scijava.module

Module extension allowing manipulation of its metadata.

MutableModuleInfo - Interface in org.scijava.module

ModuleInfo extension allowing manipulation of its metadata.

MutableModuleItem<T> - Interface in org.scijava.module

ModuleItem extension allowing manipulation of its metadata.

N

NAME - Static variable in class org.scijava.app.SciJavaApp

name() - Method in class org.scijava.log.LogSource

Returns the last entry in the list of strings.

name() - Method in interface org.scijava.parse.Item

Gets the name of the item, or null if unnamed (i.e., raw value with no equals sign).

NAME - Static variable in class org.scijava.ui.headless.HeadlessUI

NAME - Static variable in class org.scijava.ui.headlessUI.HeadlessUI

Deprecated.

Use HeadlessUI.NAME instead.

name(Type) - Static method in class org.scijava.util.Types

Gets a string representation of the given type.

Named - Interface in org.scijava

Interface for things that have names.

NAVAJOWHITE - Static variable in class org.scijava.util.Colors

NAVY - Static variable in class org.scijava.util.Colors

newRoot() - Static method in class org.scijava.log.LogSource

Returns the root log source.

newThread(Runnable) - Method in class org.scijava.thread.DefaultThreadService

next() - Method in class org.scijava.menu.ShadowMenuIterator

next() - Method in class org.scijava.util.IteratorPlus

next(int) - Method in class org.scijava.util.LastRecentlyUsed

Given the index of an entry, returns the index of the next newer entry.

nextBoolean() - Method in class org.scijava.util.MersenneTwisterFast

nextBoolean(float) - Method in class org.scijava.util.MersenneTwisterFast

This generates a coin flip with a probability probability of returning true, else returning false.

nextBoolean(double) - Method in class org.scijava.util.MersenneTwisterFast

This generates a coin flip with a probability probability of returning true, else returning false.

nextByte() - Method in class org.scijava.util.MersenneTwisterFast

nextBytes(byte[]) - Method in class org.scijava.util.MersenneTwisterFast

nextChar() - Method in class org.scijava.util.MersenneTwisterFast

nextDouble() - Method in class org.scijava.util.MersenneTwisterFast

Returns a random double in the half-open range from [0.0,1.0).

nextDouble(boolean, boolean) - Method in class org.scijava.util.MersenneTwisterFast

Returns a double in the range from 0.0 to 1.0, possibly inclusive of 0.0 and 1.0 themselves.

nextElement() - Method in class org.scijava.util.IteratorPlus

nextFloat() - Method in class org.scijava.util.MersenneTwisterFast

Returns a random float in the half-open range from [0.0f,1.0f).

nextFloat(boolean, boolean) - Method in class org.scijava.util.MersenneTwisterFast

Returns a float in the range from 0.0f to 1.0f, possibly inclusive of 0.0f and 1.0f themselves.

nextGaussian() - Method in class org.scijava.util.MersenneTwisterFast

nextInt() - Method in class org.scijava.util.MersenneTwisterFast

nextInt(int) - Method in class org.scijava.util.MersenneTwisterFast

Returns an integer drawn uniformly from 0 to n-1.

nextLong() - Method in class org.scijava.util.MersenneTwisterFast

nextLong(long) - Method in class org.scijava.util.MersenneTwisterFast

Returns a long drawn uniformly from 0 to n-1.

nextShort() - Method in class org.scijava.util.MersenneTwisterFast

NIOService - Interface in org.scijava.io.nio

Interface for services that work with the java.nio package, particularly NIO ByteBuffer objects.

NO_CONSOLE_PROPERTY - Static variable in interface org.scijava.ui.console.ConsolePane

System property which, if set, suppresses the SciJava console window.

NONE - Static variable in class org.scijava.log.LogLevel

NONE - Static variable in interface org.scijava.log.LogService

Deprecated.

Use LogLevel.NONE.

NORMAL - Static variable in class org.scijava.Priority

Default priority for items.

NORMAL_PRIORITY - Static variable in class org.scijava.Priority

Deprecated.

Use Priority.NORMAL instead.

normalize(float[]) - Static method in class org.scijava.util.Bytes

Normalize the given float array so that the minimum value maps to 0.0 and the maximum value maps to 1.0.

normalize(double[]) - Static method in class org.scijava.util.Bytes

Normalize the given double array so that the minimum value maps to 0.0 and the maximum value maps to 1.0.

NoSuchServiceException - Exception in org.scijava

An exception thrown when a Gateway cannot obtain a Service.

NoSuchServiceException() - Constructor for exception org.scijava.NoSuchServiceException

NoSuchServiceException(String) - Constructor for exception org.scijava.NoSuchServiceException

NoSuchServiceException(String, Throwable) - Constructor for exception org.scijava.NoSuchServiceException

NoSuchServiceException(Throwable) - Constructor for exception org.scijava.NoSuchServiceException

noteStructureChange() - Method in class org.scijava.display.AbstractDisplay

notifyListeners(OutputEvent) - Method in interface org.scijava.console.ConsoleService

Notifies listeners of output sent to stdout or stderr.

notifyListeners(OutputEvent) - Method in class org.scijava.console.DefaultConsoleService

notifyListeners(LogMessage) - Method in class org.scijava.log.AbstractLogService

notifyListeners(LogMessage) - Method in class org.scijava.log.DefaultLogger

notifyListeners(LogMessage) - Method in interface org.scijava.log.Logger

Broadcasts the given log message to the registered listeners.

NullContextException - Exception in org.scijava

An exception thrown when a Context is null, but shouldn't be.

NullContextException() - Constructor for exception org.scijava.NullContextException

NullContextException(String) - Constructor for exception org.scijava.NullContextException

NullContextException(String, Throwable) - Constructor for exception org.scijava.NullContextException

NullContextException(Throwable) - Constructor for exception org.scijava.NullContextException

NullConverter - Class in org.scijava.convert

Converter implementation for handling null values.

NullConverter() - Constructor for class org.scijava.convert.NullConverter

nullValue(Class<T>) - Static method in class org.scijava.util.Types

Gets the "null" value for the given type.

NumberConverters - Class in org.scijava.convert

Converter plugins that convert from primitive numeric types to other primitive numeric types.

NumberConverters.BigIntegerToBigDecimalConverter - Class in org.scijava.convert

NumberConverters.ByteToBigDecimalConverter - Class in org.scijava.convert

NumberConverters.ByteToBigIntegerConverter - Class in org.scijava.convert

NumberConverters.ByteToDoubleConverter - Class in org.scijava.convert

NumberConverters.ByteToFloatConverter - Class in org.scijava.convert

NumberConverters.ByteToIntegerConverter - Class in org.scijava.convert

NumberConverters.ByteToLongConverter - Class in org.scijava.convert

NumberConverters.ByteToShortConverter - Class in org.scijava.convert

NumberConverters.DoubleToBigDecimalConverter - Class in org.scijava.convert

NumberConverters.FloatToBigDecimalConverter - Class in org.scijava.convert

NumberConverters.FloatToDoubleConverter - Class in org.scijava.convert

NumberConverters.IntegerToBigDecimalConverter - Class in org.scijava.convert

NumberConverters.IntegerToBigIntegerConverter - Class in org.scijava.convert

NumberConverters.IntegerToDoubleConverter - Class in org.scijava.convert

NumberConverters.IntegerToLongConverter - Class in org.scijava.convert

NumberConverters.LongToBigDecimalConverter - Class in org.scijava.convert

NumberConverters.LongToBigIntegerConverter - Class in org.scijava.convert

NumberConverters.ShortToBigDecimalConverter - Class in org.scijava.convert

NumberConverters.ShortToBigIntegerConverter - Class in org.scijava.convert

NumberConverters.ShortToDoubleConverter - Class in org.scijava.convert

NumberConverters.ShortToFloatConverter - Class in org.scijava.convert

NumberConverters.ShortToIntegerConverter - Class in org.scijava.convert

NumberConverters.ShortToLongConverter - Class in org.scijava.convert

NumberToBigDecimalConverter<N extends Number> - Class in org.scijava.convert

Converts numbers to BigDecimals.

NumberToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberToBigDecimalConverter

NumberToBigIntegerConverter<N extends Number> - Class in org.scijava.convert

Converts numbers to BigIntegers.

NumberToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberToBigIntegerConverter

NumberToDoubleConverter<N extends Number> - Class in org.scijava.convert

Converts numbers to doubles.

NumberToDoubleConverter() - Constructor for class org.scijava.convert.NumberToDoubleConverter

NumberToFloatConverter<N extends Number> - Class in org.scijava.convert

Converts numbers to floats.

NumberToFloatConverter() - Constructor for class org.scijava.convert.NumberToFloatConverter

NumberToIntegerConverter<N extends Number> - Class in org.scijava.convert

Converts numbers to integers.

NumberToIntegerConverter() - Constructor for class org.scijava.convert.NumberToIntegerConverter

NumberToLongConverter<N extends Number> - Class in org.scijava.convert

Converts numbers to longs.

NumberToLongConverter() - Constructor for class org.scijava.convert.NumberToLongConverter

NumberToNumberConverter<I extends Number,O extends Number> - Class in org.scijava.convert

Converts numbers to numbers, and throws IllegalArgumentException for null or invalid input.

NumberToNumberConverter() - Constructor for class org.scijava.convert.NumberToNumberConverter

NumberToShortConverter<N extends Number> - Class in org.scijava.convert

Converts numbers to shorts.

NumberToShortConverter() - Constructor for class org.scijava.convert.NumberToShortConverter

NumberUtils - Class in org.scijava.util

Useful methods for working with Number objects.

NumberWidget<U> - Interface in org.scijava.widget

Widget interface for number choosers.

O

object() - Method in class org.scijava.AbstractGateway

object() - Method in interface org.scijava.Gateway

Gets this application context's ObjectService.

ObjectArray<E> - Class in org.scijava.util

An extensible, generic array of Object elements.

ObjectArray(Class<E>) - Constructor for class org.scijava.util.ObjectArray

Constructs an extensible array of objects, backed by a fixed-size array.

ObjectArray(Class<E>, int) - Constructor for class org.scijava.util.ObjectArray

Constructs an extensible array of objects, backed by a fixed-size array.

ObjectArray(E[]) - Constructor for class org.scijava.util.ObjectArray

Constructs an extensible array of objects, backed by the given fixed-size array.

ObjectCreatedEvent - Class in org.scijava.object.event

An event indicating a new object has been created.

ObjectCreatedEvent(Object) - Constructor for class org.scijava.object.event.ObjectCreatedEvent

ObjectDeletedEvent - Class in org.scijava.object.event

An event indicating an object has been deleted.

ObjectDeletedEvent(Object) - Constructor for class org.scijava.object.event.ObjectDeletedEvent

ObjectEvent - Class in org.scijava.object.event

An event indicating something has happened to an object.

ObjectEvent(Object) - Constructor for class org.scijava.object.event.ObjectEvent

ObjectIndex<E> - Class in org.scijava.object

Data structure for managing lists of registered objects.

ObjectIndex(Class<E>) - Constructor for class org.scijava.object.ObjectIndex

ObjectModifiedEvent - Class in org.scijava.object.event

An event indicating an object has been modified somehow.

ObjectModifiedEvent(Object) - Constructor for class org.scijava.object.event.ObjectModifiedEvent

ObjectsAddedEvent - Class in org.scijava.object.event

An event indicating one or more objects have been added to the ObjectService.

ObjectsAddedEvent(Object) - Constructor for class org.scijava.object.event.ObjectsAddedEvent

ObjectsAddedEvent(Collection<?>) - Constructor for class org.scijava.object.event.ObjectsAddedEvent

objectService() - Method in class org.scijava.display.DefaultDisplayService

objectService() - Method in interface org.scijava.display.DisplayService

ObjectService - Interface in org.scijava.object

Interface for object management service.

objectService() - Method in class org.scijava.plugin.AbstractSingletonService

objectService() - Method in interface org.scijava.plugin.SingletonService

Gets the ObjectService upon which this service depends.

ObjectsListEvent - Class in org.scijava.object.event

An event indicating something has happened to the list of objects registered with the ObjectService.

ObjectsListEvent(Object) - Constructor for class org.scijava.object.event.ObjectsListEvent

ObjectsListEvent(Collection<?>) - Constructor for class org.scijava.object.event.ObjectsListEvent

ObjectsRemovedEvent - Class in org.scijava.object.event

An event indicating one or more objects have been removed from the ObjectService.

ObjectsRemovedEvent(Object) - Constructor for class org.scijava.object.event.ObjectsRemovedEvent

ObjectsRemovedEvent(Collection<?>) - Constructor for class org.scijava.object.event.ObjectsRemovedEvent

ObjectWidget<U> - Interface in org.scijava.widget

Widget interface for object selectors.

offset() - Method in class org.scijava.download.MultiWriteHandle

offset() - Method in class org.scijava.io.handle.BytesHandle

offset() - Method in interface org.scijava.io.handle.DataHandle

Returns the current offset in the stream.

offset() - Method in class org.scijava.io.handle.DummyHandle

offset() - Method in class org.scijava.io.handle.FileHandle

offset() - Method in class org.scijava.io.handle.ReadBufferDataHandle

offset() - Method in class org.scijava.io.handle.WriteBufferDataHandle

OLDLACE - Static variable in class org.scijava.util.Colors

OLIVE - Static variable in class org.scijava.util.Colors

OLIVEDRAB - Static variable in class org.scijava.util.Colors

onDisplayActivatedEvent(DisplayActivatedEvent) - Method in interface org.scijava.ui.viewer.DisplayViewer

Handles a display activated event directed at this viewer's display.

onDisplayDeletedEvent(DisplayDeletedEvent) - Method in interface org.scijava.ui.viewer.DisplayViewer

Removes the user interface when the display is deleted.

onDisplayUpdatedEvent(DisplayUpdatedEvent) - Method in interface org.scijava.ui.viewer.DisplayViewer

Synchronizes the user interface appearance with the display model.

onEvent(AppAboutEvent) - Method in class org.scijava.app.DefaultAppService

onEvent(AppPreferencesEvent) - Method in class org.scijava.app.DefaultAppService

onEvent(AppQuitEvent) - Method in class org.scijava.app.DefaultAppService

onEvent(PluginsRemovedEvent) - Method in class org.scijava.command.DefaultCommandService

onEvent(PluginsAddedEvent) - Method in class org.scijava.command.DefaultCommandService

onEvent(DisplayActivatedEvent) - Method in class org.scijava.command.InteractiveCommand

onEvent(WinClosedEvent) - Method in class org.scijava.display.DefaultDisplayService

Deletes the display when display window is closed.

onEvent(WinActivatedEvent) - Method in class org.scijava.display.DefaultDisplayService

Sets the display to active when its window is activated.

onEvent(DisplayDeletedEvent) - Method in class org.scijava.display.DefaultDisplayService

Removes a display from the display list when it is deleted

onEvent(SciJavaEvent) - Method in class org.scijava.event.DefaultEventHistory

onEvent(E) - Method in interface org.scijava.event.EventSubscriber

onEvent(KyPressedEvent) - Method in class org.scijava.input.DefaultInputService

onEvent(KyReleasedEvent) - Method in class org.scijava.input.DefaultInputService

onEvent(MsMovedEvent) - Method in class org.scijava.input.DefaultInputService

onEvent(MsExitedEvent) - Method in class org.scijava.input.DefaultInputService

onEvent(MsPressedEvent) - Method in class org.scijava.input.DefaultInputService

onEvent(MsReleasedEvent) - Method in class org.scijava.input.DefaultInputService

onEvent(DisplayDeletedEvent) - Method in class org.scijava.input.DefaultInputService

onEvent(IOEvent) - Method in class org.scijava.io.DefaultRecentFileService

onEvent(ModulesAddedEvent) - Method in class org.scijava.menu.DefaultMenuService

onEvent(ModulesRemovedEvent) - Method in class org.scijava.menu.DefaultMenuService

onEvent(ModulesUpdatedEvent) - Method in class org.scijava.menu.DefaultMenuService

onEvent(ObjectCreatedEvent) - Method in class org.scijava.object.DefaultObjectService

onEvent(ObjectDeletedEvent) - Method in class org.scijava.object.DefaultObjectService

onEvent(AppAboutEvent) - Method in class org.scijava.platform.DefaultAppEventService

Deprecated.

onEvent(AppPreferencesEvent) - Method in class org.scijava.platform.DefaultAppEventService

Deprecated.

onEvent(AppQuitEvent) - Method in class org.scijava.platform.DefaultAppEventService

Deprecated.

onEvent(AppMenusCreatedEvent) - Method in class org.scijava.platform.DefaultPlatformService

onEvent(KyPressedEvent) - Method in class org.scijava.tool.DefaultToolService

onEvent(KyReleasedEvent) - Method in class org.scijava.tool.DefaultToolService

onEvent(MsPressedEvent) - Method in class org.scijava.tool.DefaultToolService

onEvent(MsReleasedEvent) - Method in class org.scijava.tool.DefaultToolService

onEvent(MsClickedEvent) - Method in class org.scijava.tool.DefaultToolService

onEvent(MsMovedEvent) - Method in class org.scijava.tool.DefaultToolService

onEvent(MsDraggedEvent) - Method in class org.scijava.tool.DefaultToolService

onEvent(MsWheelEvent) - Method in class org.scijava.tool.DefaultToolService

onEvent(DisplayCreatedEvent) - Method in class org.scijava.ui.DefaultUIService

Called when a display is created.

onEvent(DisplayDeletedEvent) - Method in class org.scijava.ui.DefaultUIService

Called when a display is deleted.

onEvent(DisplayUpdatedEvent) - Method in class org.scijava.ui.DefaultUIService

Called when a display is updated.

onEvent(DisplayActivatedEvent) - Method in class org.scijava.ui.DefaultUIService

Called when a display is activated.

onEvent(AppQuitEvent) - Method in class org.scijava.ui.DefaultUIService

onEvent(StatusEvent) - Method in class org.scijava.ui.DefaultUIService

onEvent(DragEnterEvent) - Method in class org.scijava.ui.dnd.DefaultDragAndDropService

onEvent(DragExitEvent) - Method in class org.scijava.ui.dnd.DefaultDragAndDropService

onEvent(DragOverEvent) - Method in class org.scijava.ui.dnd.DefaultDragAndDropService

onEvent(DropEvent) - Method in class org.scijava.ui.dnd.DefaultDragAndDropService

onEvent(DisplayCreatedEvent) - Method in class org.scijava.ui.viewer.AbstractDisplayViewer

onEvent(DisplayUpdatedEvent) - Method in class org.scijava.ui.viewer.AbstractDisplayViewer

onEvent(UIShownEvent) - Method in class org.scijava.welcome.DefaultWelcomeService

Displays the welcome text when a UI is shown for the first time.

onKeyDown(KyPressedEvent) - Method in interface org.scijava.tool.Tool

Occurs when a key on the keyboard is pressed while the tool is active.

onKeyUp(KyReleasedEvent) - Method in interface org.scijava.tool.Tool

Occurs when a key on the keyboard is released while the tool is active.

onMouseClick(MsClickedEvent) - Method in interface org.scijava.tool.Tool

Occurs when a mouse button is double clicked while the tool is active.

onMouseDown(MsPressedEvent) - Method in interface org.scijava.tool.Tool

Occurs when a mouse button is pressed while the tool is active.

onMouseDrag(MsDraggedEvent) - Method in interface org.scijava.tool.Tool

Occurs when the mouse is dragged while the tool is active.

onMouseMove(MsMovedEvent) - Method in interface org.scijava.tool.Tool

Occurs when the mouse is moved while the tool is active.

onMouseUp(MsReleasedEvent) - Method in interface org.scijava.tool.Tool

Occurs when a mouse button is released while the tool is active.

onMouseWheel(MsWheelEvent) - Method in interface org.scijava.tool.Tool

Occurs when the mouse wheel is moved while the tool is active.

open(String) - Method in class org.scijava.io.DefaultIOService

open(String) - Method in interface org.scijava.io.IOPlugin

Opens data from the given source.

open(String) - Method in interface org.scijava.io.IOService

Loads data from the given source.

open(URL) - Method in class org.scijava.platform.DefaultPlatform

Falls back to calling known browsers.

open(URL) - Method in class org.scijava.platform.DefaultPlatformService

open(URL) - Method in interface org.scijava.platform.Platform

open(URL) - Method in interface org.scijava.platform.PlatformService

Opens a URL in a platform-dependent way.

open(String) - Method in class org.scijava.script.io.ScriptIOPlugin

open(File) - Method in class org.scijava.text.DefaultTextService

open(String) - Method in class org.scijava.text.io.TextIOPlugin

open(File) - Method in interface org.scijava.text.TextService

Reads the data from the given file into a string.

OPEN_STYLE - Static variable in interface org.scijava.widget.FileWidget

Widget style for file opener dialogs.

OpenArgument - Class in org.scijava.io.console

Handles the --open command line argument.

OpenArgument() - Constructor for class org.scijava.io.console.OpenArgument

openInput(String) - Method in interface org.scijava.annotations.AbstractIndexWriter.StreamFactory

openLine() - Method in class org.scijava.util.TunePlayer

openOutput(String) - Method in interface org.scijava.annotations.AbstractIndexWriter.StreamFactory

Optional - Interface in org.scijava

A marker interface for optional SciJava components.

options() - Method in class org.scijava.AbstractGateway

options() - Method in interface org.scijava.Gateway

Gets this application context's OptionsService.

OptionsEvent - Class in org.scijava.options.event

Fired when an OptionsPlugin has changed an option.

OptionsEvent(OptionsPlugin) - Constructor for class org.scijava.options.event.OptionsEvent

OptionsPlugin - Class in org.scijava.options

Base class for all options-oriented plugins.

OptionsPlugin() - Constructor for class org.scijava.options.OptionsPlugin

OptionsService - Interface in org.scijava.options

Interface for the options handling service.

ORANGE - Static variable in class org.scijava.util.Colors

ORANGERED - Static variable in class org.scijava.util.Colors

ORCHID - Static variable in class org.scijava.util.Colors

org.scijava - package org.scijava

org.scijava.annotations - package org.scijava.annotations

org.scijava.annotations.legacy - package org.scijava.annotations.legacy

org.scijava.app - package org.scijava.app

org.scijava.app.event - package org.scijava.app.event

org.scijava.cache - package org.scijava.cache

org.scijava.command - package org.scijava.command

org.scijava.command.console - package org.scijava.command.console

org.scijava.command.run - package org.scijava.command.run

org.scijava.console - package org.scijava.console

org.scijava.convert - package org.scijava.convert

org.scijava.display - package org.scijava.display

org.scijava.display.event - package org.scijava.display.event

org.scijava.display.event.input - package org.scijava.display.event.input

org.scijava.display.event.window - package org.scijava.display.event.window

org.scijava.download - package org.scijava.download

org.scijava.event - package org.scijava.event

org.scijava.input - package org.scijava.input

org.scijava.io - package org.scijava.io

org.scijava.io.console - package org.scijava.io.console

org.scijava.io.event - package org.scijava.io.event

org.scijava.io.handle - package org.scijava.io.handle

org.scijava.io.location - package org.scijava.io.location

org.scijava.io.nio - package org.scijava.io.nio

org.scijava.log - package org.scijava.log

org.scijava.main - package org.scijava.main

org.scijava.main.console - package org.scijava.main.console

org.scijava.main.run - package org.scijava.main.run

org.scijava.menu - package org.scijava.menu

org.scijava.menu.event - package org.scijava.menu.event

org.scijava.module - package org.scijava.module

org.scijava.module.event - package org.scijava.module.event

org.scijava.module.process - package org.scijava.module.process

org.scijava.module.run - package org.scijava.module.run

org.scijava.object - package org.scijava.object

org.scijava.object.event - package org.scijava.object.event

org.scijava.options - package org.scijava.options

org.scijava.options.event - package org.scijava.options.event

org.scijava.parse - package org.scijava.parse

org.scijava.platform - package org.scijava.platform

org.scijava.platform.event - package org.scijava.platform.event

org.scijava.plugin - package org.scijava.plugin

org.scijava.plugin.event - package org.scijava.plugin.event

org.scijava.prefs - package org.scijava.prefs

org.scijava.run - package org.scijava.run

org.scijava.run.console - package org.scijava.run.console

org.scijava.script - package org.scijava.script

org.scijava.script.console - package org.scijava.script.console

org.scijava.script.io - package org.scijava.script.io

org.scijava.script.process - package org.scijava.script.process

org.scijava.script.run - package org.scijava.script.run

org.scijava.service - package org.scijava.service

org.scijava.service.event - package org.scijava.service.event

org.scijava.startup - package org.scijava.startup

org.scijava.task - package org.scijava.task

org.scijava.task.event - package org.scijava.task.event

org.scijava.test - package org.scijava.test

org.scijava.text - package org.scijava.text

org.scijava.text.io - package org.scijava.text.io

org.scijava.thread - package org.scijava.thread

org.scijava.tool - package org.scijava.tool

org.scijava.tool.event - package org.scijava.tool.event

org.scijava.ui - package org.scijava.ui

org.scijava.ui.console - package org.scijava.ui.console

org.scijava.ui.dnd - package org.scijava.ui.dnd

org.scijava.ui.dnd.event - package org.scijava.ui.dnd.event

org.scijava.ui.event - package org.scijava.ui.event

org.scijava.ui.headless - package org.scijava.ui.headless

org.scijava.ui.headlessUI - package org.scijava.ui.headlessUI

org.scijava.ui.viewer - package org.scijava.ui.viewer

org.scijava.ui.viewer.text - package org.scijava.ui.viewer.text

org.scijava.util - package org.scijava.util

org.scijava.welcome - package org.scijava.welcome

org.scijava.welcome.event - package org.scijava.welcome.event

org.scijava.widget - package org.scijava.widget

osArch() - Method in interface org.scijava.platform.Platform

Operating system architecture to match.

osName() - Method in interface org.scijava.platform.Platform

Operating system name to match.

osName() - Static method in class org.scijava.util.PlatformUtils

Gets the name of the operating system.

osVersion() - Method in interface org.scijava.platform.Platform

Minimum required operating system version.

out - Variable in class org.scijava.util.ReadInto

OutputEvent - Class in org.scijava.console

An event indicating output occurred on stdout or stderr.

OutputEvent(Context, OutputEvent.Source, String, boolean) - Constructor for class org.scijava.console.OutputEvent

Creates a new output event.

OutputEvent.Source - Enum in org.scijava.console

Possible output sources.

outputList() - Method in class org.scijava.module.AbstractModuleInfo

Gets AbstractModuleInfo.outputList, initializing if needed.

OutputListener - Interface in org.scijava.console

Listener for output on stdout or stderr.

outputMap() - Method in class org.scijava.module.AbstractModuleInfo

Gets AbstractModuleInfo.inputList, initializing if needed.

outputOccurred(OutputEvent) - Method in interface org.scijava.console.OutputListener

Method called when output occurs on stdout or stderr.

outputOccurred(OutputEvent) - Method in class org.scijava.ui.console.AbstractConsolePane

outputs() - Method in class org.scijava.command.CommandInfo

outputs() - Method in class org.scijava.module.AbstractModuleInfo

outputs() - Method in interface org.scijava.module.ModuleInfo

Gets the list of output items.

P

pack() - Method in interface org.scijava.ui.viewer.DisplayWindow

padEnd(String, int) - Static method in class org.scijava.util.StringUtils

Calls StringUtils.padEnd(String, int, char) with the StringUtils.DEFAULT_PAD_CHAR

padEnd(String, int, char) - Static method in class org.scijava.util.StringUtils

Adds characters to the end of the String to make it the given length

padStart(String, int) - Static method in class org.scijava.util.StringUtils

Calls StringUtils.padStart(String, int, char) with the StringUtils.DEFAULT_PAD_CHAR

padStart(String, int, char) - Static method in class org.scijava.util.StringUtils

Adds characters to the start of the String to make it the given length

PALEGOLDENROD - Static variable in class org.scijava.util.Colors

PALEGREEN - Static variable in class org.scijava.util.Colors

PALETURQUOISE - Static variable in class org.scijava.util.Colors

PALEVIOLETRED - Static variable in class org.scijava.util.Colors

PAPAYAWHIP - Static variable in class org.scijava.util.Colors

param - Variable in class org.scijava.script.ParameterObject

Deprecated.

param(Type, Class<?>, int) - Static method in class org.scijava.util.Types

Gets the given type's nth type parameter of the specified class.

Parameter - Annotation Type in org.scijava.plugin

An annotation for indicating a field is an input or output parameter.

parameterize(Class<?>, Type...) - Static method in class org.scijava.util.Types

Creates a new ParameterizedType of the given class together with the specified type arguments.

parameterize(Class<?>, Type, Type...) - Static method in class org.scijava.util.Types

Creates a new ParameterizedType of the given class together with the specified type arguments.

parameterize(Class<?>, Map<TypeVariable<?>, Type>) - Static method in class org.scijava.util.Types

Create a parameterized type instance.

ParameterObject - Class in org.scijava.script

Deprecated.

To be removed in SciJava Common 3.0.0.

ParameterObject(String, Class<?>, Object) - Constructor for class org.scijava.script.ParameterObject

Deprecated.

parameterObjects - Variable in class org.scijava.script.InvocationObject

Deprecated.

ParameterScriptProcessor - Class in org.scijava.script.process

A ScriptProcessor which parses the script's input and output parameters from the script header.

ParameterScriptProcessor() - Constructor for class org.scijava.script.process.ParameterScriptProcessor

parent() - Method in interface org.scijava.io.location.BrowsableLocation

Obtains a location pointing to the parent directory of this one.

parent() - Method in class org.scijava.io.location.FileLocation

parent() - Method in class org.scijava.log.LogSource

Gets the parent of this source, or null if the source is a root.

parent() - Method in class org.scijava.util.DefaultTreeNode

parent() - Method in interface org.scijava.util.TreeNode

Gets the parent of this node.

parse(String, boolean) - Method in class org.scijava.parse.DefaultParseService

parse(String) - Method in interface org.scijava.parse.ParseService

Parses a comma-delimited list of data elements.

parse(String, boolean) - Method in interface org.scijava.parse.ParseService

Parses a comma-delimited list of data elements.

parseParameters() - Method in class org.scijava.module.AbstractModuleInfo

Parses input and output parameters.

parseParameters() - Method in class org.scijava.script.ScriptInfo

Performs script processing.

parseParameterString(String) - Static method in class org.scijava.console.ConsoleUtils

Deprecated.

Use ParseService instead.

parseParameterString(String, ModuleInfo) - Static method in class org.scijava.console.ConsoleUtils

Deprecated.

Use ParseService instead.

parseParameterString(String, LogService) - Static method in class org.scijava.console.ConsoleUtils

Deprecated.

Use ParseService instead.

parseParameterString(String, ModuleInfo, LogService) - Static method in class org.scijava.console.ConsoleUtils

Deprecated.

Use ParseService instead.

ParseService - Interface in org.scijava.parse

Interface for service that parses strings.

PASSWORD_STYLE - Static variable in interface org.scijava.widget.TextWidget

Widget style for password fields.

path() - Method in class org.scijava.log.LogSource

Returns the list of strings which is represented by this LogSource.

PATH_SEPARATOR - Static variable in class org.scijava.MenuPath

The separator between elements of a menu path string.

PEACHPUFF - Static variable in class org.scijava.util.Colors

PERU - Static variable in class org.scijava.util.Colors

PINK - Static variable in class org.scijava.util.Colors

pixelsToSystemClipboard(ARGBPlane) - Method in interface org.scijava.ui.SystemClipboard

method that accepts a plane of ARGB data

platform() - Method in class org.scijava.AbstractGateway

platform() - Method in interface org.scijava.Gateway

Gets this application context's PlatformService.

Platform - Interface in org.scijava.platform

An interface for configuring a specific deployment platform, defined by criteria such as operating system, machine architecture or Java version.

PlatformService - Interface in org.scijava.platform

Interface for service that handles platform-specific deployment issues.

PlatformUtils - Class in org.scijava.util

Useful methods for platform-specific interrogation.

play(String) - Method in class org.scijava.util.TunePlayer

plugin() - Method in class org.scijava.AbstractGateway

plugin() - Method in interface org.scijava.Gateway

Gets this application context's PluginService.

Plugin - Annotation Type in org.scijava.plugin

Annotation identifying a plugin, which gets loaded by SciJava's dynamic discovery mechanism.

PluginFinder - Interface in org.scijava.plugin

Interface for mechanisms that define how SciJava plugins are discovered.

PluginIndex - Class in org.scijava.plugin

Data structure for managing registered plugins.

PluginIndex() - Constructor for class org.scijava.plugin.PluginIndex

Constructs a new plugin index which uses a DefaultPluginFinder to discover plugins.

PluginIndex(PluginFinder) - Constructor for class org.scijava.plugin.PluginIndex

Constructs a new plugin index which uses the given PluginFinder to discover plugins.

PluginInfo<PT extends SciJavaPlugin> - Class in org.scijava.plugin

A collection of metadata about a particular plugin.

PluginInfo(String, Class<PT>) - Constructor for class org.scijava.plugin.PluginInfo

Creates a new plugin metadata object.

PluginInfo(String, Class<PT>, Plugin) - Constructor for class org.scijava.plugin.PluginInfo

Creates a new plugin metadata object.

PluginInfo(String, Class<PT>, Plugin, ClassLoader) - Constructor for class org.scijava.plugin.PluginInfo

Creates a new plugin metadata object.

PluginInfo(Class<? extends PT>, Class<PT>) - Constructor for class org.scijava.plugin.PluginInfo

Creates a new plugin metadata object.

PluginInfo(Class<? extends PT>, Class<PT>, Plugin) - Constructor for class org.scijava.plugin.PluginInfo

Creates a new plugin metadata object.

PluginInfo(String, Class<? extends PT>, Class<PT>, Plugin, ClassLoader) - Constructor for class org.scijava.plugin.PluginInfo

PLUGINS_LABEL - Static variable in class org.scijava.menu.MenuConstants

PLUGINS_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants

PLUGINS_WEIGHT - Static variable in class org.scijava.menu.MenuConstants

PluginsAddedEvent - Class in org.scijava.plugin.event

An event indicating one or more plugins have been added to the PluginService.

PluginsAddedEvent(PluginInfo<?>) - Constructor for class org.scijava.plugin.event.PluginsAddedEvent

PluginsAddedEvent(Collection<? extends PluginInfo<?>>) - Constructor for class org.scijava.plugin.event.PluginsAddedEvent

pluginService() - Method in class org.scijava.command.DefaultCommandService

pluginService() - Method in class org.scijava.display.DefaultDisplayService

pluginService() - Method in interface org.scijava.display.DisplayService

pluginService() - Method in class org.scijava.plugin.AbstractPTService

PluginService - Interface in org.scijava.plugin

Interface for service that keeps track of available plugins.

pluginService() - Method in interface org.scijava.plugin.PTService

Gets the service responsible for discovering and managing this service's plugins.

PluginsListEvent - Class in org.scijava.plugin.event

An event indicating something has happened to the list of plugins registered with the PluginService.

PluginsListEvent(PluginInfo<?>) - Constructor for class org.scijava.plugin.event.PluginsListEvent

PluginsListEvent(Collection<? extends PluginInfo<?>>) - Constructor for class org.scijava.plugin.event.PluginsListEvent

PluginsRemovedEvent - Class in org.scijava.plugin.event

An event indicating one or more plugins have been removed from the PluginService.

PluginsRemovedEvent(PluginInfo<?>) - Constructor for class org.scijava.plugin.event.PluginsRemovedEvent

PluginsRemovedEvent(Collection<? extends PluginInfo<?>>) - Constructor for class org.scijava.plugin.event.PluginsRemovedEvent

PLUM - Static variable in class org.scijava.util.Colors

POM - Class in org.scijava.util

Helper class for working with Maven POMs.

POM(File) - Constructor for class org.scijava.util.POM

Parses a POM from the given file.

POM(URL) - Constructor for class org.scijava.util.POM

Parses a POM from the given URL.

POM(InputStream) - Constructor for class org.scijava.util.POM

Parses a POM from the given input stream.

POM(String) - Constructor for class org.scijava.util.POM

Parses a POM from the given string.

populateInputCandidates(Collection<Object>) - Method in class org.scijava.convert.AbstractConverter

populateInputCandidates(Collection<Object>) - Method in interface org.scijava.convert.Converter

Populates the given collection with objects which are known to exist, and which are usable as inputs for this converter.

postProcess() - Method in class org.scijava.module.ModuleRunner

Feeds the module through the ModulePostprocessors.

PostprocessorPlugin - Interface in org.scijava.module.process

A postprocessor plugin defines a step that occurs immediately following the actual execution of a Module.

POWDERBLUE - Static variable in class org.scijava.util.Colors

prefix(int) - Static method in class org.scijava.log.LogLevel

prefs() - Method in class org.scijava.AbstractGateway

prefs() - Method in interface org.scijava.app.App

Displays application preferences.

prefs() - Method in interface org.scijava.platform.AppEventService

Deprecated.

Use App.prefs() instead.

prefs() - Method in class org.scijava.platform.DefaultAppEventService

Deprecated.

Prefs - Class in org.scijava.util

Deprecated.

See PrefService

PrefService - Interface in org.scijava.prefs

Service for storing and retrieving arbitrary preferences.

preProcess() - Method in class org.scijava.module.ModuleRunner

Feeds the module through the ModulePreprocessors.

PreprocessorPlugin - Interface in org.scijava.module.process

A preprocessor plugin defines a step that occurs just prior to the actual execution of a Module.

preview() - Method in class org.scijava.command.CommandModule

Computes a preview of the command's results.

preview() - Method in class org.scijava.command.InteractiveCommand

preview() - Method in interface org.scijava.command.Previewable

Computes a preview of the operation's results.

preview() - Method in class org.scijava.module.AbstractModule

preview() - Method in interface org.scijava.module.Module

Computes a preview of the module's execution results, if available.

Previewable - Interface in org.scijava.command

An operation (usually a Command) whose results can be previewed.

previous(int) - Method in class org.scijava.util.LastRecentlyUsed

Given the index of an entry, returns the index of the next older entry.

PrimitiveArray<ArrayType,BaseType> - Interface in org.scijava.util

Interface for primitive-type extensible arrays, modeled after ArrayList, but more performant.

PrimitiveArrayUnwrapper<I,O,W extends PrimitiveArray<I,O>> - Class in org.scijava.convert

Abstract Converter for converting from the SciJava PrimitiveArray classes to primitive arrays.

PrimitiveArrayUnwrapper() - Constructor for class org.scijava.convert.PrimitiveArrayUnwrapper

PrimitiveArrayWrapper<I,O,W extends PrimitiveArray<I,O>> - Class in org.scijava.convert

Abstract Converter for converting from primitive array classes to the SciJava PrimitiveArray classes.

PrimitiveArrayWrapper() - Constructor for class org.scijava.convert.PrimitiveArrayWrapper

println(String) - Method in class org.scijava.util.LineOutputStream

This method is all that needs to be implemented.

Prioritized - Interface in org.scijava

An object that can be sorted according to priority.

PRIORITY - Static variable in class org.scijava.event.DefaultEventService

The default event service's priority.

PRIORITY - Static variable in class org.scijava.module.process.SaveInputsPreprocessor

Priority - Class in org.scijava

Constants for specifying an item's priority.

PRIORITY - Static variable in interface org.scijava.widget.InputHarvester

process(Set<? extends TypeElement>, RoundEnvironment) - Method in class org.scijava.annotations.AnnotationProcessor

process(Module) - Method in class org.scijava.display.ActiveDisplayPreprocessor

process(Module) - Method in class org.scijava.display.DisplayPostprocessor

process(Module) - Method in class org.scijava.module.process.CheckInputsPreprocessor

process(Module) - Method in class org.scijava.module.process.DebugPostprocessor

process(Module) - Method in class org.scijava.module.process.DebugPreprocessor

process(Module) - Method in class org.scijava.module.process.DefaultValuePreprocessor

process(Module) - Method in class org.scijava.module.process.GatewayPreprocessor

process(Module) - Method in class org.scijava.module.process.InitPreprocessor

process(Module) - Method in class org.scijava.module.process.LoadInputsPreprocessor

process(Module) - Method in class org.scijava.module.process.LoggerPreprocessor

process(Module) - Method in interface org.scijava.module.process.ModuleProcessor

Performs a processing step on the given module instance.

process(Module) - Method in class org.scijava.module.process.SaveInputsPreprocessor

process(Module) - Method in class org.scijava.module.process.ServicePreprocessor

process(Module) - Method in class org.scijava.module.process.ValidityPreprocessor

process(String) - Method in class org.scijava.script.process.DirectiveScriptProcessor

process(String, Map<String, Object>, String) - Method in class org.scijava.script.process.DirectiveScriptProcessor

Processes the given directive.

process(String) - Method in class org.scijava.script.process.ParameterScriptProcessor

process(String, Map<String, Object>, String) - Method in class org.scijava.script.process.ScriptDirectiveScriptProcessor

process(String) - Method in interface org.scijava.script.process.ScriptProcessor

process(ScriptInfo) - Method in interface org.scijava.script.process.ScriptProcessorService

Invokes all ScriptProcessor plugins on the given script, line by line in sequence.

process(String) - Method in class org.scijava.script.process.ShebangScriptProcessor

process(Module) - Method in class org.scijava.ui.AbstractInputHarvesterPlugin

process(Module) - Method in class org.scijava.ui.FileListPreprocessor

process(Module) - Method in class org.scijava.ui.FilePreprocessor

process(Module) - Method in class org.scijava.ui.UIPreprocessor

PROCESS_LABEL - Static variable in class org.scijava.menu.MenuConstants

PROCESS_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants

PROCESS_WEIGHT - Static variable in class org.scijava.menu.MenuConstants

processArgs(String...) - Method in interface org.scijava.console.ConsoleService

Handles arguments from an external source such as the command line.

processArgs(String...) - Method in class org.scijava.console.DefaultConsoleService

processResults(InputPanel<P, W>, Module) - Method in interface org.scijava.widget.InputHarvester

Does any needed processing, after input values have been harvested.

ProcessUtils - Class in org.scijava.util

Useful methods for working with processes.

prompt() - Method in class org.scijava.script.ScriptREPL

Outputs the prompt.

prompt() - Method in interface org.scijava.ui.DialogPrompt

PTService<PT extends SciJavaPlugin> - Interface in org.scijava.plugin

A service for managing a particular sort of SciJavaPlugin.

publish(StatusEvent) - Method in class org.scijava.app.DefaultStatusService

Publish the status event to the event service.

publish(Object) - Method in class org.scijava.event.DefaultEventBus

publish(Type, Object) - Method in class org.scijava.event.DefaultEventBus

publish(String, Object) - Method in class org.scijava.event.DefaultEventBus

publish(Object, String, Object, List, List, StackTraceElement[]) - Method in class org.scijava.event.DefaultEventBus

publish(E) - Method in class org.scijava.event.DefaultEventService

publish(E) - Method in interface org.scijava.event.EventService

Publishes the given event immediately, reporting it to all subscribers.

publishLater(Object) - Method in class org.scijava.event.DefaultEventBus

publishLater(Type, Object) - Method in class org.scijava.event.DefaultEventBus

publishLater(String, Object) - Method in class org.scijava.event.DefaultEventBus

publishLater(E) - Method in class org.scijava.event.DefaultEventService

publishLater(E) - Method in interface org.scijava.event.EventService

Queues the given event for publication, typically on a separate thread (called the "event dispatch thread").

publishNow(Object) - Method in class org.scijava.event.DefaultEventBus

publishNow(Type, Object) - Method in class org.scijava.event.DefaultEventBus

publishNow(String, Object) - Method in class org.scijava.event.DefaultEventBus

PURPLE - Static variable in class org.scijava.util.Colors

put(Object, Object) - Method in interface org.scijava.cache.CacheService

Stores the given object in the cache.

put(Object, Object) - Method in class org.scijava.cache.DefaultCacheService

put(Class<?>, String, String) - Method in class org.scijava.prefs.DefaultPrefService

put(Class<?>, String, boolean) - Method in class org.scijava.prefs.DefaultPrefService

put(Class<?>, String, double) - Method in class org.scijava.prefs.DefaultPrefService

put(Class<?>, String, float) - Method in class org.scijava.prefs.DefaultPrefService

put(Class<?>, String, int) - Method in class org.scijava.prefs.DefaultPrefService

put(Class<?>, String, long) - Method in class org.scijava.prefs.DefaultPrefService

put(Class<?>, String, Map<String, String>) - Method in class org.scijava.prefs.DefaultPrefService

put(Class<?>, String, Iterable<String>) - Method in class org.scijava.prefs.DefaultPrefService

put(Class<?>, String, String) - Method in interface org.scijava.prefs.PrefService

Saves a key/value pair in persistent storage.

put(Class<?>, String, boolean) - Method in interface org.scijava.prefs.PrefService

Saves a key/value pair in persistent storage.

put(Class<?>, String, double) - Method in interface org.scijava.prefs.PrefService

Saves a key/value pair in persistent storage.

put(Class<?>, String, float) - Method in interface org.scijava.prefs.PrefService

Saves a key/value pair in persistent storage.

put(Class<?>, String, int) - Method in interface org.scijava.prefs.PrefService

Saves a key/value pair in persistent storage.

put(Class<?>, String, long) - Method in interface org.scijava.prefs.PrefService

Saves a key/value pair in persistent storage.

put(Class<?>, String, Map<String, String>) - Method in interface org.scijava.prefs.PrefService

Saves a key/value pair in persistent storage.

put(Class<?>, String, Iterable<String>) - Method in interface org.scijava.prefs.PrefService

Saves a key/value pair in persistent storage.

put(String, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, String).

put(String, boolean) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, boolean).

put(String, double) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, double).

put(String, float) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, float).

put(String, int) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, int).

put(String, long) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, long).

put(String, Object) - Method in class org.scijava.script.AbstractScriptEngine

put(String, Object) - Method in class org.scijava.script.AdaptedScriptEngine

put(String, String) - Static method in class org.scijava.util.Prefs

Deprecated.

put(String, boolean) - Static method in class org.scijava.util.Prefs

Deprecated.

put(String, double) - Static method in class org.scijava.util.Prefs

Deprecated.

put(String, float) - Static method in class org.scijava.util.Prefs

Deprecated.

put(String, int) - Static method in class org.scijava.util.Prefs

Deprecated.

put(String, long) - Static method in class org.scijava.util.Prefs

Deprecated.

put(Class<?>, String, String) - Static method in class org.scijava.util.Prefs

Deprecated.

put(Class<?>, String, boolean) - Static method in class org.scijava.util.Prefs

Deprecated.

put(Class<?>, String, double) - Static method in class org.scijava.util.Prefs

Deprecated.

put(Class<?>, String, float) - Static method in class org.scijava.util.Prefs

Deprecated.

put(Class<?>, String, int) - Static method in class org.scijava.util.Prefs

Deprecated.

put(Class<?>, String, long) - Static method in class org.scijava.util.Prefs

Deprecated.

putIterable(Class<?>, Iterable<String>, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, Iterable).

putIterable(Iterable<String>, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, Iterable).

putList(Class<?>, List<String>) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

putList(String, List<String>, String) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

putList(String, List<String>) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

putList(Class<?>, List<String>, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, Iterable).

putList(Class<?>, List<String>) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, Iterable).

putList(List<String>, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, Iterable).

putList(String, List<String>, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, Iterable).

putList(String, List<String>) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, Iterable).

putList(List<String>, String) - Static method in class org.scijava.util.Prefs

Deprecated.

Puts a list into the preferences.

putList(Preferences, List<String>, String) - Static method in class org.scijava.util.Prefs

Deprecated.

putList(Preferences, List<String>) - Static method in class org.scijava.util.Prefs

Deprecated.

Puts a list into the preferences.

putMap(Class<?>, Map<String, String>) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

putMap(String, Map<String, String>, String) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

putMap(String, Map<String, String>) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

putMap(Class<?>, Map<String, String>, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, Map).

putMap(Class<?>, Map<String, String>) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, Map).

putMap(Map<String, String>, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, Map).

putMap(String, Map<String, String>) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, Map).

putMap(String, Map<String, String>, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.put(Class, String, Map).

putMap(Map<String, String>, String) - Static method in class org.scijava.util.Prefs

Deprecated.

Puts a map into the preferences.

putMap(Preferences, Map<String, String>, String) - Static method in class org.scijava.util.Prefs

Deprecated.

putMap(Preferences, Map<String, String>) - Static method in class org.scijava.util.Prefs

Deprecated.

Puts a map into the preferences.

Q

Query - Class in org.scijava.util

A map of annotations to annotated elements.

Query() - Constructor for class org.scijava.util.Query

Query(Query) - Constructor for class org.scijava.util.Query

queue(Runnable) - Method in class org.scijava.thread.DefaultThreadService

queue(String, Runnable) - Method in class org.scijava.thread.DefaultThreadService

queue(String, Callable<V>) - Method in class org.scijava.thread.DefaultThreadService

queue(Runnable) - Method in interface org.scijava.thread.ThreadService

Queues the given code for later execution in a special dispatch thread, returning immediately.

queue(String, Runnable) - Method in interface org.scijava.thread.ThreadService

Queues the given code for later execution in a dispatch thread associated with the specified ID, returning immediately.

queue(String, Callable<V>) - Method in interface org.scijava.thread.ThreadService

Queues the given code for later execution in a dispatch thread associated with the specified ID, returning immediately.

quit() - Method in interface org.scijava.app.App

Quits the application.

quit() - Method in interface org.scijava.platform.AppEventService

Deprecated.

Use App.quit() instead.

quit() - Method in class org.scijava.platform.DefaultAppEventService

Deprecated.

R

RADIO_BUTTON_HORIZONTAL_STYLE - Static variable in interface org.scijava.widget.ChoiceWidget

Widget style for radio buttons arranged on a single line.

RADIO_BUTTON_VERTICAL_STYLE - Static variable in interface org.scijava.widget.ChoiceWidget

Widget style for radio buttons arranged one per line.

raw(Type) - Static method in class org.scijava.util.Types

Gets the (first) raw class of the given type.

raws(Type) - Static method in class org.scijava.util.Types

Gets all raw classes corresponding to the given type.

read(byte[], int, int) - Method in class org.scijava.download.MultiWriteHandle

read(byte[], int, int) - Method in class org.scijava.io.handle.BytesHandle

read() - Method in interface org.scijava.io.handle.DataHandle

Reads the next byte of data from the stream.

read(byte[]) - Method in interface org.scijava.io.handle.DataHandle

Reads up to b.length bytes of data from the stream into an array of bytes.

read(byte[], int, int) - Method in interface org.scijava.io.handle.DataHandle

Reads up to len bytes of data from the stream into an array of bytes.

read() - Method in class org.scijava.io.handle.DataHandleInputStream

read(byte[], int, int) - Method in class org.scijava.io.handle.DataHandleInputStream

read(byte[], int, int) - Method in class org.scijava.io.handle.DummyHandle

read() - Method in class org.scijava.io.handle.FileHandle

read(byte[]) - Method in class org.scijava.io.handle.FileHandle

read(byte[], int, int) - Method in class org.scijava.io.handle.FileHandle

read(byte[], int, int) - Method in class org.scijava.io.handle.ReadBufferDataHandle

read(byte[], int, int) - Method in class org.scijava.io.handle.WriteBufferDataHandle

readBoolean() - Method in interface org.scijava.io.handle.DataHandle

readBoolean() - Method in class org.scijava.io.handle.FileHandle

readBuffer(DataHandle<Location>) - Method in interface org.scijava.io.handle.DataHandleService

Wraps the provided DataHandle in a read-only buffer for accelerated reading.

readBuffer(Location) - Method in interface org.scijava.io.handle.DataHandleService

Creates a DataHandle on the provided Location wrapped in a read-only buffer for accelerated reading.

ReadBufferDataHandle - Class in org.scijava.io.handle

Read-only buffered DataHandle.

ReadBufferDataHandle(DataHandle<Location>) - Constructor for class org.scijava.io.handle.ReadBufferDataHandle

Creates a ReadBufferDataHandle wrapping the provided handle using the default values for the size of the pages ( byte) and number of pages (ReadBufferDataHandle.DEFAULT_NUM_PAGES).

ReadBufferDataHandle(DataHandle<Location>, int) - Constructor for class org.scijava.io.handle.ReadBufferDataHandle

Creates a ReadBufferDataHandle wrapping the provided handle using the default value for the number of pages (ReadBufferDataHandle.DEFAULT_NUM_PAGES).

ReadBufferDataHandle(DataHandle<Location>, int, int) - Constructor for class org.scijava.io.handle.ReadBufferDataHandle

Creates a ReadBufferDataHandle wrapping the provided handle.

readByte() - Method in class org.scijava.download.MultiWriteHandle

readByte() - Method in class org.scijava.io.handle.BytesHandle

readByte() - Method in class org.scijava.io.handle.DummyHandle

readByte() - Method in class org.scijava.io.handle.FileHandle

readByte() - Method in class org.scijava.io.handle.ReadBufferDataHandle

readByte() - Method in class org.scijava.io.handle.WriteBufferDataHandle

readChar() - Method in interface org.scijava.io.handle.DataHandle

readChar() - Method in class org.scijava.io.handle.FileHandle

readCString() - Method in interface org.scijava.io.handle.DataHandle

Reads a string of arbitrary length, terminated by a null char.

readDouble() - Method in interface org.scijava.io.handle.DataHandle

readDouble() - Method in class org.scijava.io.handle.FileHandle

reader - Variable in class org.scijava.script.AbstractScriptContext

reader - Variable in class org.scijava.util.ReadInto

readFile(File) - Static method in class org.scijava.util.FileUtils

Reads the contents of the given file into a new byte array.

readFloat() - Method in interface org.scijava.io.handle.DataHandle

readFloat() - Method in class org.scijava.io.handle.FileHandle

readFully(byte[], int, int) - Method in class org.scijava.io.handle.BytesHandle

readFully(byte[]) - Method in interface org.scijava.io.handle.DataHandle

readFully(byte[], int, int) - Method in interface org.scijava.io.handle.DataHandle

readFully(byte[]) - Method in class org.scijava.io.handle.FileHandle

readFully(byte[], int, int) - Method in class org.scijava.io.handle.FileHandle

readHistory() - Method in class org.scijava.script.DefaultScriptInterpreter

readHistory() - Method in interface org.scijava.script.ScriptInterpreter

Reads the persisted history of the current script interpreter.

readInt() - Method in interface org.scijava.io.handle.DataHandle

readInt() - Method in class org.scijava.io.handle.FileHandle

ReadInto - Class in org.scijava.util

This class takes an InputStream and either accumulates the read bytes in a String or outputs to a PrintStream.

ReadInto(InputStream, PrintStream) - Constructor for class org.scijava.util.ReadInto

Construct a ReadInto thread and start it right away.

ReadInto(InputStream, PrintStream, boolean) - Constructor for class org.scijava.util.ReadInto

Construct a ReadInto thread and start it right away.

readLine() - Method in interface org.scijava.io.handle.DataHandle

readLine() - Method in class org.scijava.io.handle.FileHandle

readLong() - Method in interface org.scijava.io.handle.DataHandle

readLong() - Method in class org.scijava.io.handle.FileHandle

readObject() - Method in class org.scijava.annotations.legacy.LegacyReader

readOnlyException() - Static method in class org.scijava.io.handle.DataHandles

readShort() - Method in interface org.scijava.io.handle.DataHandle

readShort() - Method in class org.scijava.io.handle.FileHandle

readState(DataInputStream) - Method in class org.scijava.util.MersenneTwisterFast

Reads the entire state of the MersenneTwister RNG from the stream

readString(int) - Method in interface org.scijava.io.handle.DataHandle

Reads a string of up to length n.

readString(String) - Method in interface org.scijava.io.handle.DataHandle

Reads a string ending with one of the characters in the given string.

readUnsignedByte() - Method in interface org.scijava.io.handle.DataHandle

readUnsignedByte() - Method in class org.scijava.io.handle.FileHandle

readUnsignedShort() - Method in interface org.scijava.io.handle.DataHandle

readUnsignedShort() - Method in class org.scijava.io.handle.FileHandle

readUTF() - Method in interface org.scijava.io.handle.DataHandle

readUTF() - Method in class org.scijava.io.handle.FileHandle

RealCoords - Class in org.scijava.util

This class represents an (X, Y) coordinate pair in real coordinates.

RealCoords(double, double) - Constructor for class org.scijava.util.RealCoords

RealRect - Class in org.scijava.util

A class for representing a rectangular region, in real coordinates.

RealRect() - Constructor for class org.scijava.util.RealRect

RealRect(double, double, double, double) - Constructor for class org.scijava.util.RealRect

rebuild() - Method in class org.scijava.display.AbstractDisplay

recentFile() - Method in class org.scijava.AbstractGateway

recentFile() - Method in interface org.scijava.Gateway

Gets this application context's RecentFileService.

RecentFileService - Interface in org.scijava.io

Interface for services that manage the Recently Used Files menu.

RED - Static variable in class org.scijava.util.Colors

redoLayout() - Method in interface org.scijava.ui.viewer.DisplayPanel

Rebuilds the display window to reflect the display's current views, dimensional lengths, etc.

redraw() - Method in interface org.scijava.ui.viewer.DisplayPanel

Redraws the contents of the panel.

ReflectedUniverse - Class in org.scijava.util

A general-purpose reflection wrapper class.

ReflectedUniverse() - Constructor for class org.scijava.util.ReflectedUniverse

Constructs a new reflected universe.

ReflectedUniverse(URL[]) - Constructor for class org.scijava.util.ReflectedUniverse

Constructs a new reflected universe, with the given URLs representing additional search paths for imported classes (in addition to the CLASSPATH).

ReflectedUniverse(ClassLoader) - Constructor for class org.scijava.util.ReflectedUniverse

Constructs a new reflected universe that uses the given class loader.

ReflectException - Exception in org.scijava.util

An exception thrown when something goes wrong performing a reflected operation with ReflectedUniverse.

ReflectException() - Constructor for exception org.scijava.util.ReflectException

ReflectException(String) - Constructor for exception org.scijava.util.ReflectException

ReflectException(String, Throwable) - Constructor for exception org.scijava.util.ReflectException

ReflectException(Throwable) - Constructor for exception org.scijava.util.ReflectException

refresh() - Method in class org.scijava.widget.AbstractInputPanel

refresh() - Method in interface org.scijava.widget.InputPanel

Updates the widgets to reflect the most recent parameter value(s).

refreshWidget() - Method in class org.scijava.ui.AbstractUIInputWidget

refreshWidget() - Method in interface org.scijava.widget.InputWidget

Refreshes the widget to reflect the latest model value(s).

registerAppMenus(Object) - Method in class org.scijava.platform.DefaultPlatformService

registerAppMenus(Object) - Method in interface org.scijava.platform.Platform

Informs the platform of a UI's newly created application menu structure.

registerAppMenus(Object) - Method in interface org.scijava.platform.PlatformService

Informs the active platform handlers of a UI's newly created application menu structure.

registerEventHandlers() - Method in interface org.scijava.service.Service

Registers the service's event handler methods.

registerInput(ModuleItem<?>) - Method in class org.scijava.module.AbstractModuleInfo

Adds an input.

registerInput(ModuleItem<?>) - Method in class org.scijava.script.ScriptInfo

registerOutput(ModuleItem<?>) - Method in class org.scijava.module.AbstractModuleInfo

Adds an output.

registerOutput(ModuleItem<?>) - Method in class org.scijava.script.ScriptInfo

reloadPlugins() - Method in class org.scijava.plugin.DefaultPluginService

reloadPlugins() - Method in interface org.scijava.plugin.PluginService

Rediscovers all plugins available on the classpath.

RemoteLocation - Interface in org.scijava.io.location

A Location which resides on a remote machine.

remove(int) - Method in class org.scijava.display.AbstractDisplay

remove(Object) - Method in class org.scijava.display.AbstractDisplay

remove(String) - Method in class org.scijava.io.DefaultRecentFileService

remove(String) - Method in interface org.scijava.io.RecentFileService

Removes a path from the list of recent files.

remove(Object) - Method in class org.scijava.menu.ShadowMenu

remove() - Method in class org.scijava.menu.ShadowMenuIterator

remove(Object) - Method in class org.scijava.object.ObjectIndex

remove(Object, boolean) - Method in class org.scijava.object.ObjectIndex

Removes the object from all compatible type lists.

remove(Object, Class<?>, boolean) - Method in class org.scijava.object.ObjectIndex

Removes an object from type lists beneath the given type hierarchy.

remove(Object, boolean) - Method in class org.scijava.plugin.PluginIndex

Removes the plugin from all type lists compatible with its plugin type.

remove(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService

remove(String, String) - Method in class org.scijava.prefs.DefaultPrefService

Deprecated.

remove(Class<?>, String) - Method in interface org.scijava.prefs.PrefService

Deletes a key from persistent storage.

remove(String, String) - Method in interface org.scijava.prefs.PrefService

Deprecated.

Use PrefService.remove(Class, String).

remove(int) - Method in class org.scijava.util.AbstractPrimitiveArray

remove(Object) - Method in class org.scijava.util.BoolArray

remove(Object) - Method in class org.scijava.util.ByteArray

remove(Object) - Method in class org.scijava.util.CharArray

remove(Object) - Method in class org.scijava.util.DoubleArray

remove(Object) - Method in class org.scijava.util.FloatArray

remove(Object) - Method in class org.scijava.util.IntArray

remove() - Method in class org.scijava.util.IteratorPlus

remove(Object) - Method in class org.scijava.util.LastRecentlyUsed

remove(Object) - Method in class org.scijava.util.LongArray

remove(Object) - Method in class org.scijava.util.ObjectArray

remove(Preferences, String) - Static method in class org.scijava.util.Prefs

Deprecated.

Removes the node.

remove(Object) - Method in class org.scijava.util.ShortArray

removeAll(Collection<?>) - Method in class org.scijava.display.AbstractDisplay

removeAll(Collection<?>) - Method in class org.scijava.menu.ShadowMenu

removeAll(Collection<?>) - Method in class org.scijava.object.ObjectIndex

removeAll(Collection<?>) - Method in class org.scijava.util.BoolArray

removeAll(Collection<?>) - Method in class org.scijava.util.ByteArray

removeAll(Collection<?>) - Method in class org.scijava.util.CharArray

removeAll(Collection<?>) - Method in class org.scijava.util.DoubleArray

removeAll(Collection<?>) - Method in class org.scijava.util.FloatArray

removeAll(Collection<?>) - Method in class org.scijava.util.IntArray

removeAll(Collection<?>) - Method in class org.scijava.util.LastRecentlyUsed

removeAll(Collection<?>) - Method in class org.scijava.util.LongArray

removeAll(Collection<?>) - Method in class org.scijava.util.ObjectArray

removeAll(Collection<?>) - Method in class org.scijava.util.ShortArray

removeAttribute(String, int) - Method in class org.scijava.script.AbstractScriptContext

removeFromList(Object, List<E>, boolean) - Method in class org.scijava.object.ObjectIndex

removeInput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo

removeInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule

Removes an input from the list.

removeInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo

Removes an input from the list.

removeListener(EventHistoryListener) - Method in class org.scijava.event.DefaultEventHistory

removeListener(EventHistoryListener) - Method in interface org.scijava.event.EventHistory

Removes an event history listener.

removeLogListener(LogListener) - Method in class org.scijava.log.AbstractLogService

removeLogListener(LogListener) - Method in class org.scijava.log.DefaultLogger

removeLogListener(LogListener) - Method in interface org.scijava.log.Logger

Removes an item from the list of registered listeners.

removeModule(ModuleInfo) - Method in class org.scijava.module.DefaultModuleService

removeModule(ModuleInfo) - Method in interface org.scijava.module.ModuleService

Manually unregisters a module with the module service.

removeModules(Collection<? extends ModuleInfo>) - Method in class org.scijava.module.DefaultModuleService

removeModules(Collection<? extends ModuleInfo>) - Method in interface org.scijava.module.ModuleService

Manually unregisters a list of modules with the module service.

removeObject(Object) - Method in class org.scijava.object.DefaultObjectService

removeObject(Object) - Method in interface org.scijava.object.ObjectService

Deregisters an object with the object service.

removeOutput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo

removeOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule

Removes an output from the list.

removeOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo

Removes an output from the list.

removeOutputListener(OutputListener) - Method in interface org.scijava.console.ConsoleService

Removes a listener for output sent to stdout or stderr.

removeOutputListener(OutputListener) - Method in class org.scijava.console.DefaultConsoleService

removeOutputStream(OutputStream) - Method in class org.scijava.console.MultiOutputStream

Removes an output stream from those receiving this stream's output.

removePlugin(PluginInfo<?>) - Method in class org.scijava.plugin.DefaultPluginService

removePlugin(PluginInfo<?>) - Method in interface org.scijava.plugin.PluginService

Manually unregisters a plugin with the plugin service.

removePlugins(Collection<T>) - Method in class org.scijava.plugin.DefaultPluginService

removePlugins(Collection<T>) - Method in interface org.scijava.plugin.PluginService

Manually unregisters plugins with the plugin service.

removePropertyChangeListener(PropertyChangeListener) - Method in interface org.scijava.ui.Arrangeable

removeScriptDirectory(File) - Method in class org.scijava.script.DefaultScriptService

removeScriptDirectory(File) - Method in interface org.scijava.script.ScriptService

Removes a base directory to scan for scripts.

removeValue(boolean) - Method in class org.scijava.util.BoolArray

removeValue(byte) - Method in class org.scijava.util.ByteArray

removeValue(char) - Method in class org.scijava.util.CharArray

removeValue(double) - Method in class org.scijava.util.DoubleArray

removeValue(float) - Method in class org.scijava.util.FloatArray

removeValue(int) - Method in class org.scijava.util.IntArray

removeValue(long) - Method in class org.scijava.util.LongArray

removeValue(E) - Method in class org.scijava.util.ObjectArray

removeValue(short) - Method in class org.scijava.util.ShortArray

replace(int, T) - Method in class org.scijava.util.LastRecentlyUsed

report(String) - Method in class org.scijava.util.Timing

reportLine(double, double, double, double) - Method in class org.scijava.tool.DefaultToolService

reportLine(double, double, double, double) - Method in interface org.scijava.tool.ToolService

Publishes line length and angle in the status bar.

reportLine(RealCoords, RealCoords) - Method in interface org.scijava.tool.ToolService

Publishes line length and angle in the status bar.

reportPoint(double, double) - Method in class org.scijava.tool.DefaultToolService

reportPoint(double, double) - Method in interface org.scijava.tool.ToolService

Publishes point coordinates to the status bar.

reportPoint(RealCoords) - Method in interface org.scijava.tool.ToolService

Publishes point coordinates to the status bar.

reportRectangle(double, double, double, double) - Method in class org.scijava.tool.DefaultToolService

reportRectangle(double, double, double, double) - Method in interface org.scijava.tool.ToolService

Publishes rectangle dimensions in the status bar.

reportRectangle(RealCoords, RealCoords) - Method in interface org.scijava.tool.ToolService

Publishes rectangle dimensions in the status bar.

requestFocus() - Method in interface org.scijava.ui.viewer.DisplayWindow

requiresEDT() - Method in class org.scijava.ui.headless.HeadlessUI

requiresEDT() - Method in interface org.scijava.ui.UserInterface

Returns true if this UI requires the EDT.

reset() - Method in class org.scijava.io.handle.DataHandleInputStream

reset() - Method in class org.scijava.options.OptionsPlugin

Clears option values from persistent storage.

reset() - Method in interface org.scijava.options.OptionsService

Clears all option values from persistent storage.

reset() - Method in class org.scijava.script.DefaultScriptInterpreter

reset() - Method in interface org.scijava.script.ScriptInterpreter

Clears the buffer of not-yet-evaluated lines of code, accumulated from previous calls to ScriptInterpreter.interpret(java.lang.String).

reset() - Method in class org.scijava.util.Timing

resolve(URI) - Method in class org.scijava.io.location.FileLocationResolver

resolve(URI) - Method in interface org.scijava.io.location.LocationResolver

Resolves the given URI to a Location

resolve(String) - Method in interface org.scijava.io.location.LocationService

Turns the given string into an URI, then resolves it to a Location

resolve(URI) - Method in interface org.scijava.io.location.LocationService

Resolves the given URI to a location.

resolveInput(String) - Method in class org.scijava.module.AbstractModule

resolveInput(String) - Method in interface org.scijava.module.Module

Marks the input with the given name as resolved.

resolveOutput(String) - Method in class org.scijava.module.AbstractModule

resolveOutput(String) - Method in interface org.scijava.module.Module

Marks the output with the given name as resolved.

restoreLocation() - Method in class org.scijava.ui.AbstractUserInterface

restoreLocation() - Method in class org.scijava.ui.headless.HeadlessUI

restoreLocation() - Method in interface org.scijava.ui.UserInterface

Restores the application frame's current location.

retainAll(Collection<?>) - Method in class org.scijava.display.AbstractDisplay

retainAll(Collection<?>) - Method in class org.scijava.menu.ShadowMenu

retainAll(Collection<?>) - Method in class org.scijava.object.ObjectIndex

retainAll(Collection<?>) - Method in class org.scijava.util.LastRecentlyUsed

retrieveList(Class<?>) - Method in class org.scijava.object.ObjectIndex

Retrieves the type list for the given type, creating it if necessary.

retrieveListsForType(Class<?>) - Method in class org.scijava.object.ObjectIndex

RETURN_VALUE - Static variable in class org.scijava.script.ScriptModule

RichPlugin - Interface in org.scijava.plugin

Base interface for Contextual, Prioritized plugins that retain access to their associated PluginInfo metadata via the HasPluginInfo interface.

RIGHT_BUTTON - Static variable in class org.scijava.display.event.input.MsButtonEvent

ROSYBROWN - Static variable in class org.scijava.util.Colors

ROYALBLUE - Static variable in class org.scijava.util.Colors

run() - Method in class org.scijava.command.CommandModule

run(String, boolean, Object...) - Method in interface org.scijava.command.CommandService

Executes the first command of the given class name.

run(String, boolean, Map<String, Object>) - Method in interface org.scijava.command.CommandService

Executes the first command of the given class name.

run(Class<C>, boolean, Object...) - Method in interface org.scijava.command.CommandService

Executes the first command of the given class.

run(Class<C>, boolean, Map<String, Object>) - Method in interface org.scijava.command.CommandService

Executes the first command of the given class.

run(CommandInfo, boolean, Object...) - Method in interface org.scijava.command.CommandService

Executes the given command.

run(CommandInfo, boolean, Map<String, Object>) - Method in interface org.scijava.command.CommandService

Executes the given command.

run(String, boolean, Object...) - Method in class org.scijava.command.DefaultCommandService

run(String, boolean, Map<String, Object>) - Method in class org.scijava.command.DefaultCommandService

run(Class<C>, boolean, Object...) - Method in class org.scijava.command.DefaultCommandService

run(Class<C>, boolean, Map<String, Object>) - Method in class org.scijava.command.DefaultCommandService

run(CommandInfo, boolean, Object...) - Method in class org.scijava.command.DefaultCommandService

run(CommandInfo, boolean, Map<String, Object>) - Method in class org.scijava.command.DefaultCommandService

run(Object, Object...) - Method in class org.scijava.command.run.CommandCodeRunner

run(Object, Map<String, Object>) - Method in class org.scijava.command.run.CommandCodeRunner

run() - Method in class org.scijava.command.UnimplementedCommand

run(Object, Object...) - Method in class org.scijava.main.run.MainCodeRunner

run(Object, Map<String, Object>) - Method in class org.scijava.main.run.MainCodeRunner

run() - Method in class org.scijava.menu.ShadowMenu

Executes the module linked to this node.

run(ModuleInfo, boolean, Object...) - Method in class org.scijava.module.DefaultModuleService

run(ModuleInfo, boolean, Map<String, Object>) - Method in class org.scijava.module.DefaultModuleService

run(ModuleInfo, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Object...) - Method in class org.scijava.module.DefaultModuleService

run(ModuleInfo, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Map<String, Object>) - Method in class org.scijava.module.DefaultModuleService

run(M, boolean, Object...) - Method in class org.scijava.module.DefaultModuleService

run(M, boolean, Map<String, Object>) - Method in class org.scijava.module.DefaultModuleService

run(M, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Object...) - Method in class org.scijava.module.DefaultModuleService

run(M, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Map<String, Object>) - Method in class org.scijava.module.DefaultModuleService

run() - Method in class org.scijava.module.ModuleRunner

Executes the module, including pre- and post-processing and event notification.

run(ModuleInfo, boolean, Object...) - Method in interface org.scijava.module.ModuleService

Executes the given module.

run(ModuleInfo, boolean, Map<String, Object>) - Method in interface org.scijava.module.ModuleService

Executes the given module.

run(ModuleInfo, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Object...) - Method in interface org.scijava.module.ModuleService

Executes the given module.

run(ModuleInfo, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Map<String, Object>) - Method in interface org.scijava.module.ModuleService

Executes the given module.

run(M, boolean, Object...) - Method in interface org.scijava.module.ModuleService

Executes the given module.

run(M, boolean, Map<String, Object>) - Method in interface org.scijava.module.ModuleService

Executes the given module.

run(M, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Object...) - Method in interface org.scijava.module.ModuleService

Executes the given module.

run(M, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Map<String, Object>) - Method in interface org.scijava.module.ModuleService

Executes the given module.

run() - Method in interface org.scijava.module.MutableModule

run(Object, Object...) - Method in class org.scijava.module.run.ModuleCodeRunner

run(Object, Map<String, Object>) - Method in class org.scijava.module.run.ModuleCodeRunner

run() - Method in class org.scijava.options.OptionsPlugin

run(Object, Object...) - Method in interface org.scijava.run.CodeRunner

Executes the code identified by the given object, passing the specified arguments as inputs.

run(Object, Map<String, Object>) - Method in interface org.scijava.run.CodeRunner

Executes the code identified by the given object, passing the arguments in the specified map as inputs.

run(Object, Object...) - Method in interface org.scijava.run.RunService

Executes the given code using the most appropriate handler, passing the specified arguments as inputs.

run(Object, Map<String, Object>) - Method in interface org.scijava.run.RunService

Executes the given code using the most appropriate handler, passing the arguments in the specified map as inputs.

run(File, boolean, Object...) - Method in class org.scijava.script.DefaultScriptService

run(File, boolean, Map<String, Object>) - Method in class org.scijava.script.DefaultScriptService

run(ScriptInfo, boolean, Object...) - Method in class org.scijava.script.DefaultScriptService

run(ScriptInfo, boolean, Map<String, Object>) - Method in class org.scijava.script.DefaultScriptService

run(Object, Object...) - Method in class org.scijava.script.run.ScriptCodeRunner

run(Object, Map<String, Object>) - Method in class org.scijava.script.run.ScriptCodeRunner

run() - Method in class org.scijava.script.ScriptModule

run(File, boolean, Object...) - Method in interface org.scijava.script.ScriptService

Executes the script in the given file.

run(File, boolean, Map<String, Object>) - Method in interface org.scijava.script.ScriptService

Executes the script in the given file.

run(String, String, boolean, Object...) - Method in interface org.scijava.script.ScriptService

Executes the given script.

run(String, String, boolean, Map<String, Object>) - Method in interface org.scijava.script.ScriptService

Executes the given script.

run(String, Reader, boolean, Object...) - Method in interface org.scijava.script.ScriptService

Executes the given script.

run(String, Reader, boolean, Map<String, Object>) - Method in interface org.scijava.script.ScriptService

Executes the given script.

run(ScriptInfo, boolean, Object...) - Method in interface org.scijava.script.ScriptService

Executes the given script.

run(ScriptInfo, boolean, Map<String, Object>) - Method in interface org.scijava.script.ScriptService

Executes the given script.

run(Runnable) - Method in class org.scijava.task.DefaultTask

run(Runnable) - Method in interface org.scijava.task.Task

Starts running the task.

run(Callable<V>) - Method in class org.scijava.thread.DefaultThreadService

run(Runnable) - Method in class org.scijava.thread.DefaultThreadService

run(Callable<V>) - Method in interface org.scijava.thread.ThreadService

Asynchronously executes the given code in a new thread, as decided by the thread service.

run(Runnable) - Method in interface org.scijava.thread.ThreadService

Asynchronously executes the given code in a new thread, as decided by the thread service.

run() - Method in class org.scijava.util.MirrorWebsite

run() - Method in class org.scijava.util.ReadInto

The main method.

RunArgument - Class in org.scijava.command.console

Deprecated.

Use RunArgument instead.

RunArgument() - Constructor for class org.scijava.command.console.RunArgument

Deprecated.

RunArgument - Class in org.scijava.run.console

Handles the --run command line argument.

RunArgument() - Constructor for class org.scijava.run.console.RunArgument

RunScriptArgument - Class in org.scijava.script.console

Deprecated.

Use RunArgument instead.

RunScriptArgument() - Constructor for class org.scijava.script.console.RunScriptArgument

Deprecated.

RunService - Interface in org.scijava.run

Interface for service that manages available CodeRunner plugins.

S

SADDLEBROWN - Static variable in class org.scijava.util.Colors

safeMultiply32(long...) - Static method in class org.scijava.util.ArrayUtils

Checks that the product of the given sizes does not exceed the 32-bit integer limit (i.e., Integer.MAX_VALUE).

safeMultiply64(long...) - Static method in class org.scijava.util.ArrayUtils

Checks that the product of the given sizes does not exceed the 64-bit integer limit (i.e., Long.MAX_VALUE).

SALMON - Static variable in class org.scijava.util.Colors

samePrefix(String, String) - Static method in class org.scijava.util.StringUtils

Checks if two filenames have the same prefix.

SANDYBROWN - Static variable in class org.scijava.util.Colors

sanitize(String) - Static method in class org.scijava.util.StringUtils

Removes unprintable characters from the given string.

sanitizeDouble(String) - Static method in class org.scijava.util.StringUtils

Normalizes the decimal separator for the user's locale.

save(Object, String) - Method in class org.scijava.io.DefaultIOService

save(D, String) - Method in interface org.scijava.io.IOPlugin

Saves the given data to the specified destination.

save(Object, String) - Method in interface org.scijava.io.IOService

Saves data to the given destination.

save(ModuleItem<T>, T) - Method in class org.scijava.module.DefaultModuleService

save(ModuleItem<T>, T) - Method in interface org.scijava.module.ModuleService

Registers the given value for the given ModuleItem using the PrefService.

save() - Method in class org.scijava.options.OptionsPlugin

Saves option values to persistent storage.

SAVE_STYLE - Static variable in interface org.scijava.widget.FileWidget

Widget style for file saver dialogs.

saveChecksum(Location, String) - Method in class org.scijava.download.DiskLocationCache

saveChecksum(Location, String) - Method in interface org.scijava.download.LocationCache

Associates the given checksum value with the specified source location.

SaveInputsPreprocessor - Class in org.scijava.module.process

A preprocessor for saving populated input values to persistent storage.

SaveInputsPreprocessor() - Constructor for class org.scijava.module.process.SaveInputsPreprocessor

saveLocation() - Method in class org.scijava.ui.AbstractUserInterface

saveLocation() - Method in class org.scijava.ui.headless.HeadlessUI

saveLocation() - Method in interface org.scijava.ui.UserInterface

Persists the application frame's current location.

saveValue(T) - Method in class org.scijava.module.AbstractModuleItem

Deprecated.

saveValue(T) - Method in interface org.scijava.module.ModuleItem

Deprecated.

SciJava - Class in org.scijava

Main entry point into SciJava.

SciJava() - Constructor for class org.scijava.SciJava

Creates a new SciJava application context with all available services.

SciJava(boolean) - Constructor for class org.scijava.SciJava

Creates a new Scijava application context.

SciJava(Class...) - Constructor for class org.scijava.SciJava

Creates a new SciJava application context with the specified services (and any required service dependencies).

SciJava(Collection<Class<? extends Service>>) - Constructor for class org.scijava.SciJava

Creates a new SciJava application context with the specified services (and any required service dependencies).

SciJava(Context) - Constructor for class org.scijava.SciJava

Creates a new SciJava application context which wraps the given existing SciJava context.

SciJavaApp - Class in org.scijava.app

Application metadata about SciJava Common.

SciJavaApp() - Constructor for class org.scijava.app.SciJavaApp

SciJavaEvent - Class in org.scijava.event

Base class for all SciJava events.

SciJavaEvent() - Constructor for class org.scijava.event.SciJavaEvent

SciJavaPlugin - Interface in org.scijava.plugin

Top-level interface for plugins.

SciJavaService - Interface in org.scijava.service

Marker interface for core SciJava Common Services.

script() - Method in class org.scijava.AbstractGateway

script() - Method in interface org.scijava.Gateway

Gets this application context's ScriptService.

ScriptCallback - Interface in org.scijava.script.process

A routine which will be invoked just prior to script execution.

ScriptCodeRunner - Class in org.scijava.script.run

Runs the given script.

ScriptCodeRunner() - Constructor for class org.scijava.script.run.ScriptCodeRunner

scriptContext - Variable in class org.scijava.script.AbstractScriptEngine

ScriptDirectiveScriptProcessor - Class in org.scijava.script.process

A ScriptProcessor which parses the #@script directive.

ScriptDirectiveScriptProcessor() - Constructor for class org.scijava.script.process.ScriptDirectiveScriptProcessor

ScriptFileDragAndDropHandler - Class in org.scijava.ui.dnd

Drag-and-drop handler for script files.

ScriptFileDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.ScriptFileDragAndDropHandler

ScriptFinder - Class in org.scijava.script

Discovers scripts.

ScriptFinder(Context) - Constructor for class org.scijava.script.ScriptFinder

Creates a new script finder.

ScriptFinder(Context, String) - Constructor for class org.scijava.script.ScriptFinder

Creates a new script finder.

ScriptFinder(ScriptService) - Constructor for class org.scijava.script.ScriptFinder

Deprecated.

Use ScriptFinder.ScriptFinder(Context) instead.

ScriptHeader - Interface in org.scijava.script

Represents one or more canned lines intended to go at the top of scripts of a given language.

ScriptHeaderService - Interface in org.scijava.script

Interface for a HandlerService capable of mapping ScriptLanguages to ScriptHeaders.

ScriptInfo - Class in org.scijava.script

Metadata about a script.

ScriptInfo(Context, File) - Constructor for class org.scijava.script.ScriptInfo

Creates a script metadata object which describes the given script file.

ScriptInfo(Context, String) - Constructor for class org.scijava.script.ScriptInfo

Creates a script metadata object which describes the given script file.

ScriptInfo(Context, URL, String) - Constructor for class org.scijava.script.ScriptInfo

Creates a script metadata object which describes a script at the given URL.

ScriptInfo(Context, String, Reader) - Constructor for class org.scijava.script.ScriptInfo

Creates a script metadata object which describes a script provided by the given Reader.

ScriptInterpreter - Interface in org.scijava.script

The contract for script interpreters.

ScriptIOPlugin - Class in org.scijava.script.io

IOPlugin for scripts.

ScriptIOPlugin() - Constructor for class org.scijava.script.io.ScriptIOPlugin

ScriptLanguage - Interface in org.scijava.script

The base interface for scripting language adapters.

ScriptLanguageIndex - Class in org.scijava.script

Data structure for managing registered scripting languages.

ScriptLanguageIndex() - Constructor for class org.scijava.script.ScriptLanguageIndex

Deprecated.

ScriptLanguageIndex(LogService) - Constructor for class org.scijava.script.ScriptLanguageIndex

Instantiates an index of the available script languages.

ScriptModule - Class in org.scijava.script

A Module which executes a script.

ScriptModule(ScriptInfo) - Constructor for class org.scijava.script.ScriptModule

ScriptProcessor - Interface in org.scijava.script.process

A script processor defines some sort of processing that primes a particular script for execution.

ScriptProcessorService - Interface in org.scijava.script.process

Interface for service that processes scripts.

ScriptREPL - Class in org.scijava.script

A REPL for SciJava script engines, which allows dynamic language switching.

ScriptREPL(Context) - Constructor for class org.scijava.script.ScriptREPL

ScriptREPL(Context, OutputStream) - Constructor for class org.scijava.script.ScriptREPL

SCRIPTS_PATH_PROPERTY - Static variable in interface org.scijava.script.ScriptService

System property for overriding the list of directories to scan for scripts.

SCRIPTS_RESOURCE_DIR - Static variable in interface org.scijava.script.ScriptService

Base directory for discovering scripts, including within classpath resources as well as beneath the application base directory.

ScriptService - Interface in org.scijava.script

Interface for service that works with scripts.

SCROLL_BAR_STYLE - Static variable in interface org.scijava.widget.NumberWidget

Widget style for scroll bar with spinner.

SEAGREEN - Static variable in class org.scijava.util.Colors

SEASHELL - Static variable in class org.scijava.util.Colors

seek(long) - Method in class org.scijava.download.MultiWriteHandle

seek(long) - Method in class org.scijava.io.handle.BytesHandle

seek(long) - Method in interface org.scijava.io.handle.DataHandle

Sets the stream offset, measured from the beginning of the stream, at which the next read or write occurs.

seek(long) - Method in class org.scijava.io.handle.DummyHandle

seek(long) - Method in class org.scijava.io.handle.FileHandle

seek(long) - Method in class org.scijava.io.handle.ReadBufferDataHandle

seek(long) - Method in class org.scijava.io.handle.WriteBufferDataHandle

SEPARATOR - Static variable in class org.scijava.log.LogSource

SEPARATOR_DISTANCE - Static variable in interface org.scijava.tool.ToolService

service(Class<S>) - Method in class org.scijava.Context

Gets the service of the given class.

service(String) - Method in class org.scijava.Context

Gets the service of the given class name (useful for scripts).

Service - Interface in org.scijava.service

A SciJava service, for a particular area of functionality.

serviceClassList(Class...) - Static method in class org.scijava.Context

Utility method for converting a varargs list of service classes to a List of those classes.

ServiceCombiner - Class in org.scijava.util

Combines Service information from all JAR files on the classpath.

ServiceCombiner() - Constructor for class org.scijava.util.ServiceCombiner

ServiceHelper - Class in org.scijava.service

Helper class for discovering and instantiating available services.

ServiceHelper(Context) - Constructor for class org.scijava.service.ServiceHelper

Creates a new service helper for discovering and instantiating services.

ServiceHelper(Context, Collection<Class<? extends Service>>) - Constructor for class org.scijava.service.ServiceHelper

Creates a new service helper for discovering and instantiating services.

ServiceHelper(Context, Collection<Class<? extends Service>>, boolean) - Constructor for class org.scijava.service.ServiceHelper

Creates a new service helper for discovering and instantiating services.

ServiceIndex - Class in org.scijava.service

Data structure for tracking registered services.

ServiceIndex() - Constructor for class org.scijava.service.ServiceIndex

ServicePreprocessor - Class in org.scijava.module.process

The service preprocessor automatically populates module inputs that implement Service.

ServicePreprocessor() - Constructor for class org.scijava.module.process.ServicePreprocessor

ServicesLoadedEvent - Class in org.scijava.service.event

An event which fires when a Context finishes initializing all its services.

ServicesLoadedEvent() - Constructor for class org.scijava.service.event.ServicesLoadedEvent

set(String, String) - Method in class org.scijava.AbstractBasicDetails

set(String, String) - Method in interface org.scijava.BasicDetails

Sets the value of the given key.

set(int, T) - Method in class org.scijava.display.AbstractDisplay

set(D) - Method in class org.scijava.plugin.AbstractWrapperPlugin

set(D) - Method in interface org.scijava.plugin.WrapperPlugin

Associates the given data object with this plugin.

set(int, BaseType) - Method in class org.scijava.util.AbstractPrimitiveArray

set(int, Boolean) - Method in class org.scijava.util.BoolArray

set(int, Byte) - Method in class org.scijava.util.ByteArray

set(int, Character) - Method in class org.scijava.util.CharArray

set(int, Double) - Method in class org.scijava.util.DoubleArray

set(int, Float) - Method in class org.scijava.util.FloatArray

set(int, Integer) - Method in class org.scijava.util.IntArray

set(int, Long) - Method in class org.scijava.util.LongArray

set(int, E) - Method in class org.scijava.util.ObjectArray

set(int, Short) - Method in class org.scijava.util.ShortArray

set(WidgetModel) - Method in class org.scijava.widget.AbstractInputWidget

set(WidgetModel) - Method in interface org.scijava.widget.InputWidget

Initializes the widget to use the given widget model.

setAccelerator(Accelerator) - Method in class org.scijava.MenuEntry

setAccepted(boolean) - Method in class org.scijava.ui.dnd.event.DragEnterEvent

Sets whether the drag operation is valid.

setAccessibilityIgnored(boolean) - Method in class org.scijava.util.ReflectedUniverse

Sets whether access modifiers (protected, private, etc.) are ignored.

setActive(boolean) - Method in class org.scijava.event.DefaultEventHistory

setActive(boolean) - Method in interface org.scijava.event.EventHistory

Activates or deactivates event history tracking.

setActiveDisplay(Display<?>) - Method in class org.scijava.display.DefaultDisplayService

setActiveDisplay(Display<?>) - Method in interface org.scijava.display.DisplayService

Set the active display.

setActiveTool(Tool) - Method in class org.scijava.tool.DefaultToolService

setActiveTool(Tool) - Method in interface org.scijava.tool.ToolService

setAlpha(int, int, int) - Method in class org.scijava.ui.ARGBPlane

setARGB(int, int, int) - Method in class org.scijava.ui.ARGBPlane

setArrangement(Arrangeable.Arrangement) - Method in interface org.scijava.ui.Arrangeable

setArray(boolean[]) - Method in class org.scijava.util.BoolArray

setArray(byte[]) - Method in class org.scijava.util.ByteArray

setArray(char[]) - Method in class org.scijava.util.CharArray

setArray(double[]) - Method in class org.scijava.util.DoubleArray

setArray(float[]) - Method in class org.scijava.util.FloatArray

setArray(int[]) - Method in class org.scijava.util.IntArray

setArray(long[]) - Method in class org.scijava.util.LongArray

setArray(E[]) - Method in class org.scijava.util.ObjectArray

setArray(ArrayType) - Method in interface org.scijava.util.PrimitiveArray

Sets the fixed-size array backing this instance.

setArray(short[]) - Method in class org.scijava.util.ShortArray

setAttribute(String, Object, int) - Method in class org.scijava.script.AbstractScriptContext

setBaseDirectory(File) - Method in class org.scijava.download.DiskLocationCache

setBindings(Bindings, int) - Method in class org.scijava.script.AbstractScriptContext

setBindings(Bindings, int) - Method in class org.scijava.script.AbstractScriptEngine

setBindings(Bindings, int) - Method in class org.scijava.script.AdaptedScriptEngine

setBlue(int, int, int) - Method in class org.scijava.ui.ARGBPlane

setByte(long, byte) - Method in class org.scijava.io.ByteArrayByteBank

setByte(long, byte) - Method in interface org.scijava.io.ByteBank

Sets the byte at the given position

setByte(long, byte) - Method in class org.scijava.io.nio.ByteBufferByteBank

setBytes(long, byte[], int, int) - Method in class org.scijava.io.ByteArrayByteBank

setBytes(long, byte[], int, int) - Method in interface org.scijava.io.ByteBank

Sets the bytes starting form the given position to the values form the provided array.

setBytes(long, byte[], int, int) - Method in class org.scijava.io.nio.ByteBufferByteBank

setCallback(String) - Method in class org.scijava.module.DefaultMutableModuleItem

setCallback(String) - Method in interface org.scijava.module.MutableModuleItem

setCallingThread(Thread) - Method in class org.scijava.event.SciJavaEvent

Sets the thread that published the event.

setChoices(List<? extends T>) - Method in class org.scijava.module.DefaultMutableModuleItem

setChoices(List<? extends T>) - Method in interface org.scijava.module.MutableModuleItem

setColumnCount(int) - Method in class org.scijava.module.DefaultMutableModuleItem

setColumnCount(int) - Method in interface org.scijava.module.MutableModuleItem

setConsumed(boolean) - Method in class org.scijava.event.SciJavaEvent

setContent(DisplayPanel) - Method in interface org.scijava.ui.viewer.DisplayWindow

setContext(Context) - Method in class org.scijava.command.CommandModule

setContext(Context) - Method in class org.scijava.command.DynamicCommand

setContext(Context) - Method in class org.scijava.command.ModuleCommand

setContext(Context) - Method in interface org.scijava.Contextual

Sets the application context to which the object belongs.

setContext(ScriptContext) - Method in class org.scijava.script.AbstractScriptEngine

setContext(ScriptContext) - Method in class org.scijava.script.AdaptedScriptEngine

setContext(Context) - Method in class org.scijava.script.ScriptInfo

setContext(Context) - Method in class org.scijava.script.ScriptModule

setContext(Context) - Method in class org.scijava.service.AbstractService

setDefaultUI(UserInterface) - Method in class org.scijava.ui.DefaultUIService

setDefaultUI(UserInterface) - Method in interface org.scijava.ui.UIService

Sets the default user interface.

setDefaultValue(T) - Method in class org.scijava.module.DefaultMutableModuleItem

setDefaultValue(T) - Method in interface org.scijava.module.MutableModuleItem

setDelegateService(ConvertService, double) - Static method in class org.scijava.util.ConversionUtils

Deprecated.

Sets the ConvertService to use for handling conversion requests.

setDelegateService(PrefService, double) - Static method in class org.scijava.util.Prefs

Deprecated.

Sets the PrefService

setDescription(String) - Method in class org.scijava.AbstractBasicDetails

setDescription(String) - Method in interface org.scijava.BasicDetails

Sets a string describing the object.

setDescription(String) - Method in class org.scijava.command.DynamicCommandInfo

setDescription(String) - Method in class org.scijava.module.DefaultMutableModuleItem

setEnabled(boolean) - Method in class org.scijava.AbstractUIDetails

setEnabled(boolean) - Method in class org.scijava.command.DynamicCommandInfo

setEnabled(boolean) - Method in interface org.scijava.UIDetails

Sets whether the object should be enabled in the user interface.

setEncoding(String) - Method in class org.scijava.io.handle.AbstractDataHandle

setEncoding(String) - Method in interface org.scijava.io.handle.DataHandle

Sets the native encoding of the stream.

setErrorWriter(Writer) - Method in class org.scijava.script.AbstractScriptContext

setErrorWriter(Writer) - Method in class org.scijava.script.ScriptModule

Sets the writer used to record the standard error stream.

setExecutorService(ExecutorService) - Method in class org.scijava.thread.DefaultThreadService

setExecutorService(ExecutorService) - Method in interface org.scijava.thread.ThreadService

Sets the ExecutorService object used when ThreadService.run(java.util.concurrent.Callable<V>) is called.

setFileLocationCachingEnabled(boolean) - Method in class org.scijava.download.DiskLocationCache

setFirstRun(boolean) - Method in class org.scijava.welcome.DefaultWelcomeService

setFirstRun(boolean) - Method in interface org.scijava.welcome.WelcomeService

Sets a preference recording whether this version of the dominant SJC application has run.

setGreen(int, int, int) - Method in class org.scijava.ui.ARGBPlane

setHeadless(boolean) - Method in class org.scijava.ui.DefaultUIService

setHeadless(boolean) - Method in interface org.scijava.ui.UIService

Sets whether the application is running in headless mode (no UI).

setIconPath(String) - Method in class org.scijava.AbstractUIDetails

setIconPath(String) - Method in class org.scijava.command.DynamicCommandInfo

setIconPath(String) - Method in class org.scijava.MenuEntry

setIconPath(String) - Method in interface org.scijava.UIDetails

Sets the resource path to an icon representing the object.

setIconPixel(int, int, ColorRGB) - Method in interface org.scijava.tool.IconDrawer

setInfo(PluginInfo<?>) - Method in class org.scijava.plugin.AbstractRichPlugin

setInfo(PluginInfo<?>) - Method in interface org.scijava.plugin.HasPluginInfo

Sets the PluginInfo metadata associated with the object.

setInitialized(boolean) - Method in class org.scijava.widget.DefaultWidgetModel

setInitialized(boolean) - Method in interface org.scijava.widget.WidgetModel

Toggles the widget's initialization state.

setInitializer(String) - Method in class org.scijava.module.DefaultMutableModuleItem

setInitializer(String) - Method in interface org.scijava.module.MutableModuleItem

setInput(String, Object) - Method in class org.scijava.command.CommandModule

setInput(String, Object) - Method in class org.scijava.command.DynamicCommand

setInput(String, Object) - Method in class org.scijava.module.AbstractModule

setInput(String, Object) - Method in interface org.scijava.module.Module

Sets the value of the input with the given name.

setInputs(Map<String, Object>) - Method in class org.scijava.module.AbstractModule

setInputs(Map<String, Object>) - Method in interface org.scijava.module.Module

Sets input values according to the given table.

setIOType(ItemIO) - Method in class org.scijava.module.DefaultMutableModuleItem

setIOType(ItemIO) - Method in interface org.scijava.module.MutableModuleItem

setLabel(String) - Method in class org.scijava.AbstractBasicDetails

setLabel(String) - Method in interface org.scijava.BasicDetails

Sets the name to appear in a UI, if applicable.

setLabel(String) - Method in class org.scijava.command.DynamicCommandInfo

setLabel(String) - Method in class org.scijava.module.DefaultMutableModuleItem

setLabel(String) - Method in interface org.scijava.ui.viewer.DisplayPanel

Sets the label at the top of the display panel.

setLanguage(ScriptLanguage) - Method in class org.scijava.script.ScriptInfo

Overrides the script language to use when executing the script.

setLanguage(ScriptLanguage) - Method in class org.scijava.script.ScriptModule

Deprecated.

Use ScriptInfo.setLanguage(ScriptLanguage) instead.

setLength(long) - Method in class org.scijava.download.MultiWriteHandle

setLength(long) - Method in class org.scijava.io.handle.BytesHandle

setLength(long) - Method in interface org.scijava.io.handle.DataHandle

Sets the new length of the handle.

setLength(long) - Method in class org.scijava.io.handle.DummyHandle

setLength(long) - Method in class org.scijava.io.handle.FileHandle

setLength(long) - Method in class org.scijava.io.handle.ReadBufferDataHandle

setLength(long) - Method in class org.scijava.io.handle.WriteBufferDataHandle

setLevel(int) - Method in class org.scijava.log.AbstractLogService

setLevel(String, int) - Method in class org.scijava.log.AbstractLogService

setLevel(int) - Method in interface org.scijava.log.LogService

Changes the log level of the root logger.

setLevel(String, int) - Method in interface org.scijava.log.LogService

For messages that are logged directly to the LogService.

setLevelForLogger(String, int) - Method in class org.scijava.log.AbstractLogService

setLevelForLogger(String, int) - Method in interface org.scijava.log.LogService

Setting the log level for loggers depending on their LogSource.

setLittleEndian(boolean) - Method in interface org.scijava.io.handle.DataHandle

Sets the endianness of the stream.

setLocation(int, int) - Method in interface org.scijava.ui.ApplicationFrame

Sets the coordinates of the application frame's top left corner.

setLogLevel(int) - Method in class org.scijava.log.LogSource

setLogService(LogService) - Method in class org.scijava.script.AbstractScriptEngine

setMaximumGrowth(int) - Method in class org.scijava.util.AbstractPrimitiveArray

setMaximumGrowth(int) - Method in interface org.scijava.util.PrimitiveArray

Sets the maximal step size by which to grow the fixed-size array when running out of space.

setMaximumValue(T) - Method in class org.scijava.module.DefaultMutableModuleItem

setMaximumValue(T) - Method in interface org.scijava.module.MutableModuleItem

setMenuPath(MenuPath) - Method in class org.scijava.AbstractUIDetails

setMenuPath(MenuPath) - Method in class org.scijava.command.DynamicCommandInfo

setMenuPath(MenuPath) - Method in interface org.scijava.UIDetails

Sets the path to the object's suggested position in the menu structure.

setMenuRoot(String) - Method in class org.scijava.AbstractUIDetails

setMenuRoot(String) - Method in class org.scijava.command.DynamicCommandInfo

setMenuRoot(String) - Method in interface org.scijava.UIDetails

Sets the name of the menu structure to which the object belongs.

setMinimumValue(T) - Method in class org.scijava.module.DefaultMutableModuleItem

setMinimumValue(T) - Method in interface org.scijava.module.MutableModuleItem

setMnemonic(char) - Method in class org.scijava.MenuEntry

setMode(String) - Method in class org.scijava.io.handle.FileHandle

setModuleClass(Class<? extends Module>) - Method in class org.scijava.module.DefaultMutableModuleInfo

setModuleClass(Class<? extends Module>) - Method in interface org.scijava.module.MutableModuleInfo

Sets the module class described by this ModuleInfo.

setName(String) - Method in class org.scijava.AbstractBasicDetails

setName(String) - Method in class org.scijava.command.DynamicCommandInfo

setName(String) - Method in class org.scijava.display.AbstractDisplay

setName(String) - Method in class org.scijava.menu.ShadowMenu

setName(String) - Method in class org.scijava.MenuEntry

setName(String) - Method in class org.scijava.module.DefaultMutableModuleItem

setName(String) - Method in interface org.scijava.Named

Sets the name of the object.

setName(String) - Method in class org.scijava.task.DefaultTask

setNoteLength(int) - Method in class org.scijava.util.TunePlayer

setOctave(int) - Method in class org.scijava.util.TunePlayer

setOrder(DataHandle.ByteOrder) - Method in class org.scijava.io.handle.AbstractDataHandle

setOrder(DataHandle.ByteOrder) - Method in interface org.scijava.io.handle.DataHandle

Sets the byte order of the stream.

setOutput(String, Object) - Method in class org.scijava.command.CommandModule

setOutput(String, Object) - Method in class org.scijava.command.DynamicCommand

setOutput(String, Object) - Method in class org.scijava.module.AbstractModule

setOutput(String, Object) - Method in interface org.scijava.module.Module

Sets the value of the output with the given name.

setOutputs(Map<String, Object>) - Method in class org.scijava.module.AbstractModule

setOutputs(Map<String, Object>) - Method in interface org.scijava.module.Module

Sets output values according to the given table.

setOutputWriter(Writer) - Method in class org.scijava.script.ScriptModule

Sets the writer used to record the standard output stream.

setPanel(DisplayPanel) - Method in class org.scijava.ui.viewer.AbstractDisplayViewer

setPanel(DisplayPanel) - Method in interface org.scijava.ui.viewer.DisplayViewer

Installs the display panel.

setParent(TreeNode<?>) - Method in class org.scijava.util.DefaultTreeNode

setParent(TreeNode<?>) - Method in interface org.scijava.util.TreeNode

setPersisted(boolean) - Method in class org.scijava.module.DefaultMutableModuleItem

setPersisted(boolean) - Method in interface org.scijava.module.MutableModuleItem

setPersistKey(String) - Method in class org.scijava.module.DefaultMutableModuleItem

setPersistKey(String) - Method in interface org.scijava.module.MutableModuleItem

setPluginClass(Class<? extends Command>) - Method in class org.scijava.command.CommandInfo

setPluginClass(Class<? extends PT>) - Method in class org.scijava.plugin.PluginInfo

Explicitly sets the Class of the item objects.

setPluginType(Class<PT>) - Method in class org.scijava.plugin.PluginInfo

Sets the type of plugin described by the metadata.

setPresets(Map<String, Object>) - Method in class org.scijava.command.CommandInfo

Sets the table of items with fixed, preset values.

setPrintStreams(Function<Integer, PrintStream>) - Method in class org.scijava.log.StderrLogService

setPriority(double) - Method in class org.scijava.AbstractUIDetails

setPriority(double) - Method in class org.scijava.command.DynamicCommandInfo

setPriority(double) - Method in class org.scijava.plugin.AbstractRichPlugin

setPriority(double) - Method in interface org.scijava.Prioritized

Sets the sort priority of the object.

setProgress(int, int) - Method in interface org.scijava.ui.StatusBar

setProgressMaximum(long) - Method in class org.scijava.task.DefaultTask

setProgressMaximum(long) - Method in interface org.scijava.task.Task

Sets the total number of steps.

setProgressValue(long) - Method in class org.scijava.task.DefaultTask

setProgressValue(long) - Method in interface org.scijava.task.Task

Sets the current step.

setReader(Reader) - Method in class org.scijava.script.AbstractScriptContext

setRed(int, int, int) - Method in class org.scijava.ui.ARGBPlane

setRequired(boolean) - Method in class org.scijava.module.DefaultMutableModuleItem

setRequired(boolean) - Method in interface org.scijava.module.MutableModuleItem

setResolved(String, boolean) - Method in interface org.scijava.module.Module

Deprecated.

Use Module.resolveInput(String) and Module.unresolveInput(String) instead.

setReturnValueAppended(boolean) - Method in class org.scijava.script.ScriptInfo

Gets whether the return value is appended as an additional output.

setSeed(long) - Method in class org.scijava.util.MersenneTwisterFast

Initalize the pseudo random number generator.

setSeed(int[]) - Method in class org.scijava.util.MersenneTwisterFast

Sets the seed of the MersenneTwister using an array of integers.

setSelectable(boolean) - Method in class org.scijava.AbstractUIDetails

setSelectable(boolean) - Method in class org.scijava.command.DynamicCommandInfo

setSelectable(boolean) - Method in interface org.scijava.UIDetails

Sets whether the object can be selected (e.g., checking and unchecking its menu item) in the user interface.

setSelected(boolean) - Method in class org.scijava.AbstractUIDetails

setSelected(boolean) - Method in class org.scijava.command.DynamicCommandInfo

setSelected(boolean) - Method in interface org.scijava.UIDetails

Sets whether the object is selected (e.g., its menu item is checked) in the user interface.

setSelectionGroup(String) - Method in class org.scijava.AbstractUIDetails

setSelectionGroup(String) - Method in class org.scijava.command.DynamicCommandInfo

setSelectionGroup(String) - Method in interface org.scijava.UIDetails

Sets the name of the selection group to which the object belongs.

setSize(int) - Method in class org.scijava.util.AbstractPrimitiveArray

setSize(int) - Method in interface org.scijava.util.Sizable

setSize(int) - Method in class org.scijava.util.SizableArrayList

setSoftMaximum(T) - Method in class org.scijava.module.DefaultMutableModuleItem

setSoftMaximum(T) - Method in interface org.scijava.module.MutableModuleItem

setSoftMinimum(T) - Method in class org.scijava.module.DefaultMutableModuleItem

setSoftMinimum(T) - Method in interface org.scijava.module.MutableModuleItem

setSourceObject(Object) - Method in class org.scijava.convert.ConversionRequest

Sets the source object for this ConversionRequest.

setStatus(String) - Method in interface org.scijava.ui.StatusBar

setStatusMessage(String) - Method in class org.scijava.task.DefaultTask

setStatusMessage(String) - Method in interface org.scijava.task.Task

Sets the status message.

setStepSize(Number) - Method in class org.scijava.module.DefaultMutableModuleItem

setStepSize(Number) - Method in interface org.scijava.module.MutableModuleItem

setStrict(boolean) - Method in class org.scijava.Context

setSuccessful(boolean) - Method in class org.scijava.ui.dnd.event.DropEvent

Sets whether the drop operation was successful.

setTempo(int) - Method in class org.scijava.util.TunePlayer

setTimeout(long) - Method in class org.scijava.io.location.AbstractRemoteLocation

setTimeout(long) - Method in interface org.scijava.io.location.RemoteLocation

Sets the connection timeout for this location.

setTitle(String) - Method in interface org.scijava.ui.viewer.DisplayWindow

setValidater(String) - Method in class org.scijava.module.DefaultMutableModuleItem

setValidater(String) - Method in interface org.scijava.module.MutableModuleItem

setValue(Module, T) - Method in class org.scijava.module.AbstractModuleItem

setValue(Module, T) - Method in interface org.scijava.module.ModuleItem

Sets the item's current value with respect to the given module.

setValue(int, boolean) - Method in class org.scijava.util.BoolArray

setValue(int, byte) - Method in class org.scijava.util.ByteArray

setValue(int, char) - Method in class org.scijava.util.CharArray

setValue(Field, Object, Object) - Static method in class org.scijava.util.ClassUtils

Sets the given field's value of the specified object instance.

setValue(int, double) - Method in class org.scijava.util.DoubleArray

setValue(int, float) - Method in class org.scijava.util.FloatArray

setValue(int, int) - Method in class org.scijava.util.IntArray

setValue(int, long) - Method in class org.scijava.util.LongArray

setValue(int, E) - Method in class org.scijava.util.ObjectArray

setValue(int, short) - Method in class org.scijava.util.ShortArray

setValue(Object) - Method in class org.scijava.widget.DefaultWidgetModel

setValue(Object) - Method in interface org.scijava.widget.WidgetModel

Sets the current value of the module input.

setVar(String, Object) - Method in class org.scijava.util.ReflectedUniverse

Registers a variable in the universe.

setVar(String, boolean) - Method in class org.scijava.util.ReflectedUniverse

Registers a variable of primitive type boolean in the universe.

setVar(String, byte) - Method in class org.scijava.util.ReflectedUniverse

Registers a variable of primitive type byte in the universe.

setVar(String, char) - Method in class org.scijava.util.ReflectedUniverse

Registers a variable of primitive type char in the universe.

setVar(String, double) - Method in class org.scijava.util.ReflectedUniverse

Registers a variable of primitive type double in the universe.

setVar(String, float) - Method in class org.scijava.util.ReflectedUniverse

Registers a variable of primitive type float in the universe.

setVar(String, int) - Method in class org.scijava.util.ReflectedUniverse

Registers a variable of primitive type int in the universe.

setVar(String, long) - Method in class org.scijava.util.ReflectedUniverse

Registers a variable of primitive type long in the universe.

setVar(String, short) - Method in class org.scijava.util.ReflectedUniverse

Registers a variable of primitive type short in the universe.

setVisibility(ItemVisibility) - Method in class org.scijava.module.DefaultMutableModuleItem

setVisibility(ItemVisibility) - Method in interface org.scijava.module.MutableModuleItem

setVisible(boolean) - Method in class org.scijava.AbstractUIDetails

setVisible(boolean) - Method in interface org.scijava.ui.ApplicationFrame

Show or hide the application frame

setVisible(boolean) - Method in interface org.scijava.UIDetails

Sets whether the object should be visible in the user interface.

setWeight(double) - Method in class org.scijava.MenuEntry

setWidgetStyle(String) - Method in class org.scijava.module.DefaultMutableModuleItem

setWidgetStyle(String) - Method in interface org.scijava.module.MutableModuleItem

setWriter(Writer) - Method in class org.scijava.script.AbstractScriptContext

sha1(byte[]) - Static method in class org.scijava.util.DigestUtils

Gets the given byte array's SHA-1 checksum, or null if unavailable.

ShadowMenu - Class in org.scijava.menu

A tree representing a menu structure independent of any particular user interface.

ShadowMenu(Context, Collection<? extends ModuleInfo>) - Constructor for class org.scijava.menu.ShadowMenu

Constructs a root menu node populated with the given modules.

ShadowMenuIterator - Class in org.scijava.menu

Recursive iterator for ShadowMenu hierarchies.

ShadowMenuIterator(ShadowMenu) - Constructor for class org.scijava.menu.ShadowMenuIterator

ShebangScriptProcessor - Class in org.scijava.script.process

A ScriptProcessor which looks for a #! at the beginning of a script, and set the language accordingly.

ShebangScriptProcessor() - Constructor for class org.scijava.script.process.ShebangScriptProcessor

ShortArray - Class in org.scijava.util

An extensible array of short elements.

ShortArray() - Constructor for class org.scijava.util.ShortArray

Constructs an extensible array of shorts, backed by a fixed-size array.

ShortArray(int) - Constructor for class org.scijava.util.ShortArray

Constructs an extensible array of shorts, backed by a fixed-size array.

ShortArray(short[]) - Constructor for class org.scijava.util.ShortArray

Constructs an extensible array of shorts, backed by the given fixed-size array.

ShortArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.ShortArrayUnwrapper

ShortArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.ShortArrayWrapper

SHORTENER_BACKSLASH - Static variable in class org.scijava.util.FileUtils

SHORTENER_BACKSLASH_REGEX - Static variable in class org.scijava.util.FileUtils

SHORTENER_ELLIPSE - Static variable in class org.scijava.util.FileUtils

SHORTENER_SLASH - Static variable in class org.scijava.util.FileUtils

SHORTENER_SLASH_REGEX - Static variable in class org.scijava.util.FileUtils

shortenPath(String) - Static method in class org.scijava.util.FileUtils

Shortens the path to a maximum of 4 path elements.

shortenPath(String, int) - Static method in class org.scijava.util.FileUtils

Shortens the path based on the given maximum number of path elements.

ShortToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.ShortToBigDecimalConverter

ShortToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ShortToBigIntegerConverter

ShortToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.ShortToDoubleConverter

ShortToFloatConverter() - Constructor for class org.scijava.convert.NumberConverters.ShortToFloatConverter

ShortToIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ShortToIntegerConverter

ShortToLongConverter() - Constructor for class org.scijava.convert.NumberConverters.ShortToLongConverter

show() - Method in class org.scijava.ui.AbstractUserInterface

show(String, Object) - Method in class org.scijava.ui.AbstractUserInterface

show(Display<?>) - Method in class org.scijava.ui.AbstractUserInterface

show() - Method in interface org.scijava.ui.console.ConsolePane

Makes the console visible.

show(Object) - Method in class org.scijava.ui.DefaultUIService

show(String, Object) - Method in class org.scijava.ui.DefaultUIService

show(Display<?>) - Method in class org.scijava.ui.DefaultUIService

show() - Method in class org.scijava.ui.headless.HeadlessUI

show(String, Object) - Method in class org.scijava.ui.headless.HeadlessUI

show(Display<?>) - Method in class org.scijava.ui.headless.HeadlessUI

show(Object) - Method in interface org.scijava.ui.UIService

Creates a Display for the given object, and shows it using an appropriate UI widget of the default user interface.

show(String, Object) - Method in interface org.scijava.ui.UIService

Creates a Display for the given object, and shows it using an appropriate UI widget of the default user interface.

show(Display<?>) - Method in interface org.scijava.ui.UIService

Creates and shows the given Display using an appropriate UI widget of the default user interface.

show() - Method in interface org.scijava.ui.UserInterface

Shows the UI.

show(Object) - Method in interface org.scijava.ui.UserInterface

Shows the object onscreen using an appropriate UI widget.

show(String, Object) - Method in interface org.scijava.ui.UserInterface

Shows the object onscreen using an appropriate UI widget.

show(Display<?>) - Method in interface org.scijava.ui.UserInterface

Shows the display onscreen using an appropriate UI widget.

showContextMenu(String, Display<?>, int, int) - Method in class org.scijava.ui.DefaultUIService

showContextMenu(String, Display<?>, int, int) - Method in class org.scijava.ui.headless.HeadlessUI

showContextMenu(String, Display<?>, int, int) - Method in interface org.scijava.ui.UIService

Displays a popup context menu for the given display at the specified position.

showContextMenu(String, Display<?>, int, int) - Method in interface org.scijava.ui.UserInterface

Displays a popup context menu for the given display at the specified position.

showDialog(String) - Method in class org.scijava.ui.DefaultUIService

showDialog(String, DialogPrompt.MessageType) - Method in class org.scijava.ui.DefaultUIService

showDialog(String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.DefaultUIService

showDialog(String, String) - Method in class org.scijava.ui.DefaultUIService

showDialog(String, String, DialogPrompt.MessageType) - Method in class org.scijava.ui.DefaultUIService

showDialog(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.DefaultUIService

showDialog(String) - Method in interface org.scijava.ui.UIService

Displays a dialog prompt.

showDialog(String, DialogPrompt.MessageType) - Method in interface org.scijava.ui.UIService

Displays a dialog prompt.

showDialog(String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in interface org.scijava.ui.UIService

Displays a dialog prompt.

showDialog(String, String) - Method in interface org.scijava.ui.UIService

Displays a dialog prompt.

showDialog(String, String, DialogPrompt.MessageType) - Method in interface org.scijava.ui.UIService

Displays a dialog prompt.

showDialog(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in interface org.scijava.ui.UIService

Displays a dialog prompt.

showDisplay(boolean) - Method in interface org.scijava.ui.viewer.DisplayWindow

Places this component into the desktop environment.

showProgress(int, int) - Method in class org.scijava.app.DefaultStatusService

showProgress(int, int) - Method in interface org.scijava.app.StatusService

Updates the progress bar.

showStatus(String) - Method in class org.scijava.app.DefaultStatusService

showStatus(int, int, String) - Method in class org.scijava.app.DefaultStatusService

showStatus(int, int, String, boolean) - Method in class org.scijava.app.DefaultStatusService

showStatus(String) - Method in interface org.scijava.app.StatusService

Updates the status message.

showStatus(int, int, String) - Method in interface org.scijava.app.StatusService

Updates the status message and progress bar.

showStatus(int, int, String, boolean) - Method in interface org.scijava.app.StatusService

Updates the status message and progress bar, optionally flagging the status notification as a warning.

showUI() - Method in class org.scijava.ui.DefaultUIService

showUI(String) - Method in class org.scijava.ui.DefaultUIService

showUI(UserInterface) - Method in class org.scijava.ui.DefaultUIService

showUI() - Method in interface org.scijava.ui.UIService

Displays the UI for the default user interface.

showUI(String) - Method in interface org.scijava.ui.UIService

Displays the UI with the given name (or class name).

showUI(UserInterface) - Method in interface org.scijava.ui.UIService

Displays the given UI.

ShowUIArgument - Class in org.scijava.ui.console

Handles the --showUI argument, which signals that the UI should be opened immediately.

ShowUIArgument() - Constructor for class org.scijava.ui.console.ShowUIArgument

sibling(String) - Method in interface org.scijava.io.location.BrowsableLocation

Obtains a location relative to this one, which will be configured like the current location, but point to a the file specified by the path parameter.

sibling(String) - Method in class org.scijava.io.location.FileLocation

SIENNA - Static variable in class org.scijava.util.Colors

SILVER - Static variable in class org.scijava.util.Colors

SingletonPlugin - Interface in org.scijava.plugin

Interface for plugins intended to be instantiated as singletons.

SingletonService<PT extends SingletonPlugin> - Interface in org.scijava.plugin

A service for managing SingletonPlugins of a particular type.

Sizable - Interface in org.scijava.util

An entity with a size.

SizableArrayList<E> - Class in org.scijava.util

An ArrayList whose size can be adjusted more efficiently.

SizableArrayList(int) - Constructor for class org.scijava.util.SizableArrayList

SizableArrayList() - Constructor for class org.scijava.util.SizableArrayList

SizableArrayList(Collection<? extends E>) - Constructor for class org.scijava.util.SizableArrayList

size() - Method in class org.scijava.display.AbstractDisplay

size() - Method in class org.scijava.io.ByteArrayByteBank

size() - Method in interface org.scijava.io.ByteBank

size() - Method in class org.scijava.io.nio.ByteBufferByteBank

size() - Method in class org.scijava.menu.ShadowMenu

size() - Method in class org.scijava.object.ObjectIndex

size() - Method in class org.scijava.util.AbstractPrimitiveArray

size() - Method in class org.scijava.util.LastRecentlyUsed

size() - Method in interface org.scijava.util.Sizable

skip(long) - Method in interface org.scijava.io.handle.DataHandle

Skips over and discards n bytes of data from the stream.

skip(long) - Method in class org.scijava.io.handle.DataHandleInputStream

skip(long) - Method in class org.scijava.io.handle.WriteBufferDataHandle

skipBytes(int) - Method in interface org.scijava.io.handle.DataHandle

skipBytes(int) - Method in class org.scijava.io.handle.FileHandle

SKYBLUE - Static variable in class org.scijava.util.Colors

SLATEBLUE - Static variable in class org.scijava.util.Colors

SLATEGRAY - Static variable in class org.scijava.util.Colors

SLATEGREY - Static variable in class org.scijava.util.Colors

SLIDER_STYLE - Static variable in interface org.scijava.widget.NumberWidget

Widget style for slider with spinner.

SNOW - Static variable in class org.scijava.util.Colors

sort(List<PT>, Class<PT>) - Method in interface org.scijava.plugin.PluginService

Sorts the given list of plugin instances by priority.

SortablePlugin - Class in org.scijava.plugin

Deprecated.

Use AbstractRichPlugin instead.

SortablePlugin() - Constructor for class org.scijava.plugin.SortablePlugin

Deprecated.

SortedObjectIndex<E extends Comparable<? super E>> - Class in org.scijava.object

Data structure for managing sorted lists of registered objects.

SortedObjectIndex(Class<E>) - Constructor for class org.scijava.object.SortedObjectIndex

source() - Method in interface org.scijava.download.Download

source() - Method in class org.scijava.log.LogMessage

Represents the source of the message.

sourceClass() - Method in class org.scijava.convert.ConversionRequest

sourceObject() - Method in class org.scijava.convert.ConversionRequest

sourceType() - Method in class org.scijava.convert.ConversionRequest

SPINNER_STYLE - Static variable in interface org.scijava.widget.NumberWidget

Widget style for spinner only.

splitUnquoted(String, String) - Static method in class org.scijava.util.StringUtils

Splits a string only at separators outside of quotation marks (").

SPRINGGREEN - Static variable in class org.scijava.util.Colors

start(boolean) - Static method in class org.scijava.util.Timing

startup() - Method in class org.scijava.AbstractGateway

startup() - Method in interface org.scijava.Gateway

Gets this application context's StartupService.

StartupService - Interface in org.scijava.startup

Interface for service managing startup operations.

stateEquals(Object) - Method in class org.scijava.util.MersenneTwisterFast

statementTerminate() - Method in interface org.scijava.script.CodeGenerator

Deprecated.

statementTerminate() - Method in class org.scijava.script.CodeGeneratorJava

Deprecated.

status() - Method in class org.scijava.AbstractGateway

status() - Method in interface org.scijava.Gateway

Gets this application context's StatusService.

StatusBar - Interface in org.scijava.ui

Common interface for status bars, which have a text area and progress bar, similar to ImageJ 1.x.

StatusEvent - Class in org.scijava.app.event

An event indicating a status update.

StatusEvent(String) - Constructor for class org.scijava.app.event.StatusEvent

StatusEvent(String, boolean) - Constructor for class org.scijava.app.event.StatusEvent

StatusEvent(int, int) - Constructor for class org.scijava.app.event.StatusEvent

StatusEvent(int, int, String) - Constructor for class org.scijava.app.event.StatusEvent

StatusEvent(int, int, String, boolean) - Constructor for class org.scijava.app.event.StatusEvent

StatusService - Interface in org.scijava.app

Interface for the status notification service.

StderrLogService - Class in org.scijava.log

Implementation of LogService using the standard error stream.

StderrLogService() - Constructor for class org.scijava.log.StderrLogService

STEELBLUE - Static variable in class org.scijava.util.Colors

stop(Timing) - Static method in class org.scijava.util.Timing

STRICT_PROPERTY - Static variable in class org.scijava.Context

System property indicating whether the context should fail fast when attempting to instantiate a required service which is invalid or missing.

string(byte[]) - Static method in class org.scijava.util.DigestUtils

Converts the given byte array to a string.

string(List<?>) - Static method in class org.scijava.util.ListUtils

Converts the given list to a string.

string(List<?>, boolean) - Static method in class org.scijava.util.ListUtils

Converts the given list to a string.

string(List<?>, String, String, String, boolean) - Static method in class org.scijava.util.ListUtils

Converts the given list to a string.

StringMaker - Class in org.scijava.util

Helper class for building up Strings of key/value pairs.

StringMaker() - Constructor for class org.scijava.util.StringMaker

StringMaker(String) - Constructor for class org.scijava.util.StringMaker

StringToFileArrayConverter() - Constructor for class org.scijava.convert.FileListConverters.StringToFileArrayConverter

StringToFileConverter() - Constructor for class org.scijava.convert.FileListConverters.StringToFileConverter

StringUtils - Class in org.scijava.util

Useful methods for working with Strings.

stripFilenameVersion(String) - Static method in class org.scijava.util.FileUtils

stripNulls(String) - Static method in class org.scijava.util.StringUtils

Removes null bytes from a string.

subList(int, int) - Method in class org.scijava.display.AbstractDisplay

subLogger(String, int) - Method in class org.scijava.log.AbstractLogService

subLogger(String, int) - Method in class org.scijava.log.DefaultLogger

subLogger(String) - Method in interface org.scijava.log.Logger

Creates a sub logger, that forwards the message it gets to this logger.

subLogger(String, int) - Method in interface org.scijava.log.Logger

Creates a sub logger, that forwards the message it gets to this logger.

subscribe(Object) - Method in class org.scijava.event.DefaultEventService

subscribe(Object) - Method in interface org.scijava.event.EventService

Subscribes all of the given object's @EventHandler annotated methods.

subSource(String) - Method in class org.scijava.log.LogSource

Returns a log source with the given path.

supports(LinkedList<String>) - Method in class org.scijava.command.console.RunArgument

Deprecated.

supports(Object) - Method in class org.scijava.command.run.CommandCodeRunner

supports(LinkedList<String>) - Method in class org.scijava.console.AbstractConsoleArgument

supports(LinkedList<String>) - Method in class org.scijava.console.SystemPropertyArgument

supports(ConversionRequest) - Method in class org.scijava.convert.AbstractConverter

supports(Object, Class<?>) - Method in class org.scijava.convert.AbstractConvertService

supports(Class<?>, Class<?>) - Method in class org.scijava.convert.AbstractConvertService

supports(Object, Type) - Method in class org.scijava.convert.AbstractConvertService

supports(Class<?>, Type) - Method in class org.scijava.convert.AbstractConvertService

supports(Object, Class<?>) - Method in interface org.scijava.convert.ConvertService

supports(Object, Type) - Method in interface org.scijava.convert.ConvertService

supports(Class<?>, Class<?>) - Method in interface org.scijava.convert.ConvertService

Deprecated.

Use ConvertService.supports(Object, Class)

supports(Class<?>, Type) - Method in interface org.scijava.convert.ConvertService

Deprecated.

Use ConvertService.supports(Object, Type)

supports(LinkedList<String>) - Method in class org.scijava.io.console.OpenArgument

supports(String) - Method in interface org.scijava.io.IOPlugin

supports(URI) - Method in class org.scijava.io.location.AbstractLocationResolver

supports(LinkedList<String>) - Method in class org.scijava.main.console.MainArgument

supports(Object) - Method in class org.scijava.main.run.MainCodeRunner

supports(Object) - Method in class org.scijava.module.run.ModuleCodeRunner

supports(D) - Method in class org.scijava.plugin.AbstractTypedPlugin

supports(DT) - Method in interface org.scijava.plugin.HandlerService

Gets whether the given data object is supported.

supports(DT) - Method in interface org.scijava.plugin.WrapperService

supports(LinkedList<String>) - Method in class org.scijava.run.console.RunArgument

supports(ScriptLanguage) - Method in class org.scijava.script.AbstractScriptHeader

supports(LinkedList<String>) - Method in class org.scijava.script.console.RunScriptArgument

Deprecated.

supports(Object) - Method in class org.scijava.script.run.ScriptCodeRunner

supports(File) - Method in interface org.scijava.text.TextFormat

supports(File) - Method in interface org.scijava.text.TextService

Gets whether the given file contains text data in a supported format.

supports(T) - Method in interface org.scijava.Typed

Gets whether this object is compatible with the given data object.

supports(LinkedList<String>) - Method in class org.scijava.ui.console.HeadlessArgument

supports(LinkedList<String>) - Method in class org.scijava.ui.console.ShowUIArgument

supports(D, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

supports(D, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Gets whether this handler supports dropping the given data object onto the specified display.

supports(D) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Gets whether this handler supports dropping the given data object onto a compatible display.

supports(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService

Checks whether the given DragAndDropData can be dropped onto the specified display.

supports(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService

Checks whether the given object can be dropped onto the specified display.

supports(File) - Method in class org.scijava.ui.dnd.FileDragAndDropHandler

supports(List<?>, Display<?>) - Method in class org.scijava.ui.dnd.ListDragAndDropHandler

supports(File) - Method in class org.scijava.ui.dnd.ScriptFileDragAndDropHandler

supports(WidgetModel) - Method in class org.scijava.widget.AbstractInputWidget

supports(InputWidget<?, ?>) - Method in interface org.scijava.widget.InputPanel

Gets whether the given widget would be appropriate for the given panel.

supports(WidgetModel) - Method in interface org.scijava.widget.InputWidget

Gets whether this widget would be appropriate for the given model.

supportsData(DragAndDropData) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

supportsData(DragAndDropData, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

supportsData(DragAndDropData) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Gets whether this handler supports dropping the given DragAndDropData onto a compatible display.

supportsData(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Gets whether this handler supports dropping the given DragAndDropData onto the specified display.

supportsDisplay(Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

supportsDisplay(Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Gets whether this handler supports dropping an assumed-to-be-compatible data object onto the given Display.

supportsObject(Object) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

supportsObject(Object, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler

supportsObject(Object) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Gets whether this handler supports dropping the given object onto a compatible display.

supportsObject(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler

Gets whether this handler supports dropping the given object onto the specified display.

supportsOpen(String) - Method in interface org.scijava.io.IOPlugin

Checks whether the I/O plugin can open data from the given source.

supportsOpen(String) - Method in class org.scijava.script.io.ScriptIOPlugin

supportsOpen(String) - Method in class org.scijava.text.io.TextIOPlugin

supportsSave(String) - Method in interface org.scijava.io.IOPlugin

Checks whether the I/O plugin can save data to the given destination.

supportsSave(Object, String) - Method in interface org.scijava.io.IOPlugin

Checks whether the I/O plugin can save the given data to the specified destination.

swap(short) - Static method in class org.scijava.util.Bytes

swap(char) - Static method in class org.scijava.util.Bytes

swap(int) - Static method in class org.scijava.util.Bytes

swap(long) - Static method in class org.scijava.util.Bytes

swap(float) - Static method in class org.scijava.util.Bytes

swap(double) - Static method in class org.scijava.util.Bytes

SystemClipboard - Interface in org.scijava.ui

UI agnostic representation of the system clipboard.

SystemPropertyArgument - Class in org.scijava.console

Handles the -D command line argument, in an analogous way to tools such as Java and Maven.

SystemPropertyArgument() - Constructor for class org.scijava.console.SystemPropertyArgument

T

TAN - Static variable in class org.scijava.util.Colors

task() - Method in interface org.scijava.download.Download

Task - Interface in org.scijava.task

A self-aware job which reports its status and progress as it runs.

TaskEvent - Class in org.scijava.task.event

An event indicating a Task has been updated.

TaskEvent(Task) - Constructor for class org.scijava.task.event.TaskEvent

TaskService - Interface in org.scijava.task

Service for working with Tasks.

TEAL - Static variable in class org.scijava.util.Colors

TestUtils - Class in org.scijava.test

A bunch of helpful functions for unit tests.

TestUtils() - Constructor for class org.scijava.test.TestUtils

text() - Method in class org.scijava.AbstractGateway

text() - Method in interface org.scijava.Gateway

Gets this application context's TextService.

text() - Method in class org.scijava.log.LogMessage

The content of this log message.

TextDisplay - Interface in org.scijava.display

Interface for text Displays.

TextDisplayPanel - Interface in org.scijava.ui.viewer.text

This is a panel that can go inside a display window.

TextDisplayViewer - Interface in org.scijava.ui.viewer.text

A display viewer for Strings.

TextFormat - Interface in org.scijava.text

TextFormat is a plugin that provides handling for a text markup language.

TextIOPlugin - Class in org.scijava.text.io

IOPlugin for text conversion to HTML.

TextIOPlugin() - Constructor for class org.scijava.text.io.TextIOPlugin

TextService - Interface in org.scijava.text

Interface for service that works with text formats.

TextWidget<U> - Interface in org.scijava.widget

Widget interface for text fields and areas.

THISTLE - Static variable in class org.scijava.util.Colors

thread() - Method in class org.scijava.AbstractGateway

thread() - Method in interface org.scijava.Gateway

Gets this application context's ThreadService.

THREAD_COUNT - Static variable in class org.scijava.util.MirrorWebsite

ThreadService - Interface in org.scijava.thread

Interface for the thread handling service.

ThreadService.ThreadContext - Enum in org.scijava.thread

throwable() - Method in class org.scijava.log.LogMessage

Exception associated with the log message.

tick(Timing) - Static method in class org.scijava.util.Timing

tick(Timing, Object) - Static method in class org.scijava.util.Timing

time() - Method in class org.scijava.log.LogMessage

Time of the creation of the log message.

Timing - Class in org.scijava.util

A helper class to help with optimizing the performance of a list of operations.

Timing() - Constructor for class org.scijava.util.Timing

toArray() - Method in class org.scijava.display.AbstractDisplay

toArray(U[]) - Method in class org.scijava.display.AbstractDisplay

toArray() - Method in class org.scijava.menu.ShadowMenu

toArray(T[]) - Method in class org.scijava.menu.ShadowMenu

toArray() - Method in class org.scijava.object.ObjectIndex

toArray(T[]) - Method in class org.scijava.object.ObjectIndex

toArray() - Method in class org.scijava.util.LastRecentlyUsed

toArray(S[]) - Method in class org.scijava.util.LastRecentlyUsed

toByteArray(long, int) - Method in interface org.scijava.io.ByteBank

Copies part of this buffer into a newly allocated byte array.

toByteArray() - Method in interface org.scijava.io.ByteBank

Copies this entire buffer into a newly allocated byte array.

toCollection(Object) - Static method in class org.scijava.util.ArrayUtils

Converts the provided Object to a Collection implementation.

toDouble(byte[], int, int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first len bytes of a byte array beyond the given offset to a double.

toDouble(byte[], int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 8 bytes of a byte array beyond the given offset to a double.

toDouble(byte[], boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 8 bytes of a byte array to a double.

toDouble(short[], int, int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first len bytes of a byte array beyond the given offset to a double.

toDouble(short[], int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 8 bytes of a byte array beyond the given offset to a double.

toDouble(short[], boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 8 bytes of a byte array to a double.

toFloat(byte[], int, int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first len bytes of a byte array beyond the given offset to a float.

toFloat(byte[], int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 4 bytes of a byte array beyond a given offset to a float.

toFloat(byte[], boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 4 bytes of a byte array to a float.

toFloat(short[], int, int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first len bytes of a byte array beyond a given offset to a float.

toFloat(short[], int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 4 bytes of a byte array beyond a given offset to a float.

toFloat(short[], boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 4 bytes of a byte array to a float.

ToggleWidget<U> - Interface in org.scijava.widget

Widget interface for boolean toggles.

toHTML(Set<Class<? extends SciJavaEvent>>, Set<Class<? extends SciJavaEvent>>) - Method in class org.scijava.event.DefaultEventHistory

toHTML(boolean) - Method in class org.scijava.event.EventDetails

toHTML(Set<Class<? extends SciJavaEvent>>, Set<Class<? extends SciJavaEvent>>) - Method in interface org.scijava.event.EventHistory

Gets the recorded event history as an HTML string.

toHTMLColor() - Method in class org.scijava.util.ColorRGB

Convert this ColorRGB to a string in the format specified by CSS Color Module Level 3 - W3C Recommendation 07 June 2011.

toInt(byte[], int, int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first len bytes of a byte array beyond the given offset to an int.

toInt(byte[], int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 4 bytes of a byte array beyond the given offset to an int.

toInt(byte[], boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 4 bytes of a byte array to an int.

toInt(short[], int, int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first len bytes of a byte array beyond the given offset to an int.

toInt(short[], int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 4 bytes of a byte array beyond the given offset to an int.

toInt(short[], boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 4 bytes of a byte array to an int.

toLong(byte[], int, int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first len bytes of a byte array beyond the given offset to a long.

toLong(byte[], int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 8 bytes of a byte array beyond the given offset to a long.

toLong(byte[], boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 8 bytes of a byte array to a long.

toLong(short[], int, int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first len bytes of a byte array beyond the given offset to a long.

toLong(short[], int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 8 bytes of a byte array beyond the given offset to a long.

toLong(short[], boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 8 bytes of a byte array to a long.

TOMATO - Static variable in class org.scijava.util.Colors

toMillis(int) - Method in class org.scijava.util.TunePlayer

Converts the given note length to milliseconds, by the current tempo.

toNumber(Object, Class<?>) - Static method in class org.scijava.util.NumberUtils

Converts the given object to a Number of the specified type, or null if the types are incompatible.

tool() - Method in class org.scijava.AbstractGateway

tool() - Method in interface org.scijava.Gateway

Gets this application context's ToolService.

Tool - Interface in org.scijava.tool

Interface for tools.

ToolActivatedEvent - Class in org.scijava.tool.event

An event indicating a tool has been activated.

ToolActivatedEvent(Tool) - Constructor for class org.scijava.tool.event.ToolActivatedEvent

ToolBar - Interface in org.scijava.ui

Common interface for tool bars, which are button bars with selectable tools, similar to ImageJ 1.x.

ToolDeactivatedEvent - Class in org.scijava.tool.event

An event indicating a tool has been deactivated.

ToolDeactivatedEvent(Tool) - Constructor for class org.scijava.tool.event.ToolDeactivatedEvent

ToolEvent - Class in org.scijava.tool.event

An event indicating something has happened to a tool.

ToolEvent(Tool) - Constructor for class org.scijava.tool.event.ToolEvent

ToolService - Interface in org.scijava.tool

Interface for service that tracks available tools.

toShort(byte[], int, int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first len bytes of a byte array beyond the given offset to a short.

toShort(byte[], int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 2 bytes of a byte array beyond the given offset to a short.

toShort(byte[], boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 2 bytes of a byte array to a short.

toShort(short[], int, int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first len bytes of a byte array beyond the given offset to a short.

toShort(short[], int, boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 2 bytes of a byte array beyond the given offset to a short.

toShort(short[], boolean) - Static method in class org.scijava.util.Bytes

Translates up to the first 2 bytes of a byte array to a short.

toSimpleName(Class<?>) - Static method in class org.scijava.annotations.legacy.LegacyReader

toString() - Method in class org.scijava.AbstractBasicDetails

toString() - Method in class org.scijava.AbstractUIDetails

toString() - Method in class org.scijava.app.event.StatusEvent

toString() - Method in class org.scijava.command.CommandInfo

toString() - Method in class org.scijava.command.CommandModule

toString() - Method in class org.scijava.console.OutputEvent

toString() - Method in class org.scijava.display.AbstractDisplay

toString() - Method in class org.scijava.display.event.DisplayEvent

toString() - Method in class org.scijava.display.event.input.InputEvent

toString() - Method in class org.scijava.display.event.input.KyEvent

toString() - Method in class org.scijava.display.event.input.MsButtonEvent

toString() - Method in class org.scijava.display.event.window.WinEvent

toString() - Method in class org.scijava.event.SciJavaEvent

toString() - Method in class org.scijava.input.Accelerator

toString() - Method in class org.scijava.input.InputModifiers

toString() - Method in class org.scijava.io.event.IOEvent

toString() - Method in class org.scijava.log.LogMessage

toString() - Method in class org.scijava.log.LogSource

toString() - Method in class org.scijava.menu.ShadowMenu

toString() - Method in class org.scijava.MenuEntry

toString() - Method in class org.scijava.module.AbstractModuleItem

toString() - Method in class org.scijava.module.event.ModuleEvent

toString() - Method in class org.scijava.module.event.ModuleProcessEvent

toString() - Method in class org.scijava.object.event.ListEvent

toString() - Method in class org.scijava.object.event.ObjectEvent

toString() - Method in class org.scijava.object.ObjectIndex

toString() - Method in class org.scijava.options.event.OptionsEvent

toString() - Method in class org.scijava.platform.event.AppFocusEvent

toString() - Method in class org.scijava.platform.event.AppMenusCreatedEvent

toString() - Method in class org.scijava.platform.event.AppSleepEvent

toString() - Method in class org.scijava.platform.event.AppUserSessionEvent

toString() - Method in class org.scijava.platform.event.AppVisibleEvent

toString() - Method in class org.scijava.plugin.AbstractRichPlugin

toString() - Method in class org.scijava.plugin.PluginInfo

toString() - Method in class org.scijava.script.AbstractScriptLanguage

toString() - Method in class org.scijava.service.AbstractService

toString() - Method in class org.scijava.task.event.TaskEvent

toString() - Method in class org.scijava.tool.event.ToolEvent

toString() - Method in class org.scijava.ui.dnd.event.DragAndDropEvent

toString() - Method in class org.scijava.ui.dnd.event.DragEnterEvent

toString() - Method in class org.scijava.ui.dnd.event.DropEvent

toString() - Method in class org.scijava.ui.dnd.MIMEType

toString() - Method in class org.scijava.ui.event.UIEvent

toString() - Method in class org.scijava.util.ColorRGB

toString() - Method in class org.scijava.util.IntCoords

toString() - Method in class org.scijava.util.IntRect

toString() - Method in class org.scijava.util.ReadInto

Return the output as a String unless a PrintStream was specified in the constructor.

toString() - Method in class org.scijava.util.RealCoords

toString() - Method in class org.scijava.util.RealRect

toString() - Method in class org.scijava.util.StringMaker

toString() - Method in class org.scijava.util.XML

trace(Object) - Method in interface org.scijava.log.Logger

trace(Throwable) - Method in interface org.scijava.log.Logger

trace(Object, Throwable) - Method in interface org.scijava.log.Logger

TRACE - Static variable in class org.scijava.log.LogLevel

TRACE - Static variable in interface org.scijava.log.LogService

Deprecated.

Use LogLevel.TRACE.

TreeNode<T> - Interface in org.scijava.util

A wrapper around a data object, for storing it in a tree structure.

TunePlayer - Class in org.scijava.util

Any QBasic fans out there? ;-)

TunePlayer() - Constructor for class org.scijava.util.TunePlayer

TunePlayer(int) - Constructor for class org.scijava.util.TunePlayer

TURQUOISE - Static variable in class org.scijava.util.Colors

type - Variable in class org.scijava.script.ParameterObject

Deprecated.

Typed<T> - Interface in org.scijava

An object with an associated type (i.e., Class), which can be queried at runtime.

TypedPlugin<D> - Interface in org.scijava.plugin

Interface for plugins with an associated type (i.e., Class).

TypedService<DT,PT extends TypedPlugin<DT>> - Interface in org.scijava.plugin

A service for managing a particular sort of TypedPlugin.

Types - Class in org.scijava.util

Utility class for working with generic types, fields and methods.

U

ui() - Method in class org.scijava.AbstractGateway

ui() - Method in interface org.scijava.Gateway

Gets this application context's UIService.

ui() - Method in class org.scijava.ui.AbstractUIInputWidget

ui(String) - Method in class org.scijava.ui.AbstractUIInputWidget

UI_PROPERTY - Static variable in interface org.scijava.ui.UIService

System property to set for overriding the default UI.

UIArgument - Class in org.scijava.ui.console

Handles the --ui command line argument.

UIArgument() - Constructor for class org.scijava.ui.console.UIArgument

UIComponent<C> - Interface in org.scijava.widget

An interface identifying an object housed within a UI component.

UIDetails - Interface in org.scijava

An interface defining details useful for generating relevant user interface elements.

UIEvent - Class in org.scijava.ui.event

An event indicating activity relating to a UserInterface.

UIEvent(UserInterface) - Constructor for class org.scijava.ui.event.UIEvent

UIPreprocessor - Class in org.scijava.ui

The UI preprocessor automatically populates module UserInterface inputs with the UIService's default UI instance, if compatible.

UIPreprocessor() - Constructor for class org.scijava.ui.UIPreprocessor

UIService - Interface in org.scijava.ui

Interface for service that handles user interfaces.

UIShownEvent - Class in org.scijava.ui.event

An event indicating a user interface was shown.

UIShownEvent(UserInterface) - Constructor for class org.scijava.ui.event.UIShownEvent

unbox(Class<T>) - Static method in class org.scijava.util.Types

Returns the primitive Class closest to the given type.

uncancel() - Method in class org.scijava.command.DynamicCommand

uncaughtException(Thread, Throwable) - Method in class org.scijava.log.DefaultUncaughtExceptionHandler

UnimplementedCommand - Class in org.scijava.command

A command that is not yet implemented.

UnimplementedCommand() - Constructor for class org.scijava.command.UnimplementedCommand

UnitUtils - Class in org.scijava.util

Utility methods for working with units.

unpack(long, byte[], int, int, boolean) - Static method in class org.scijava.util.Bytes

Translates nBytes of the given long and places the result in the given byte array.

unresolveInput(String) - Method in class org.scijava.module.AbstractModule

unresolveInput(String) - Method in interface org.scijava.module.Module

Marks the input with the given name as unresolved.

unresolveOutput(String) - Method in class org.scijava.module.AbstractModule

unresolveOutput(String) - Method in interface org.scijava.module.Module

Marks the output with the given name as unresolved.

unsubscribe(Collection<EventSubscriber<?>>) - Method in class org.scijava.event.DefaultEventService

unsubscribe(Collection<EventSubscriber<?>>) - Method in interface org.scijava.event.EventService

Removes all the given subscribers; they will no longer be notified when events are published.

update(EventService) - Method in class org.scijava.command.CommandInfo

update(ModuleItem<T>, T) - Method in class org.scijava.command.InteractiveCommand

update() - Method in class org.scijava.display.AbstractDisplay

update() - Method in interface org.scijava.display.Display

Updates and redraws the display onscreen.

update(ModuleInfo) - Method in class org.scijava.menu.ShadowMenu

Updates the menu structure to reflect changes in the given module.

update(EventService) - Method in interface org.scijava.module.ModuleInfo

Notifies interested parties that the module info has been modified.

updateAll(Collection<? extends ModuleInfo>) - Method in class org.scijava.menu.ShadowMenu

Updates the menu structure to reflect changes in the given modules.

updateAnnotationIndex(ClassLoader) - Static method in class org.scijava.annotations.EclipseHelper

Updates the annotation index in the current Eclipse project.

updateInput(ModuleItem<?>) - Method in class org.scijava.command.InteractiveCommand

updateModel() - Method in class org.scijava.widget.AbstractInputWidget

updateModel() - Method in interface org.scijava.widget.InputWidget

Updates the model to reflect the latest widget state.

updateTitle() - Method in class org.scijava.ui.viewer.AbstractDisplayViewer

upOctave() - Method in class org.scijava.util.TunePlayer

URILocation - Class in org.scijava.io.location

Location backed by a URI string.

URILocation(URI) - Constructor for class org.scijava.io.location.URILocation

URILocation(String) - Constructor for class org.scijava.io.location.URILocation

URLLocation - Class in org.scijava.io.location

Location backed by a URL.

URLLocation(URL) - Constructor for class org.scijava.io.location.URLLocation

urlToFile(URL) - Static method in class org.scijava.util.FileUtils

Converts the given URL to its corresponding File.

urlToFile(String) - Static method in class org.scijava.util.FileUtils

Converts the given URL string to its corresponding File.

UserInterface - Interface in org.scijava.ui

An end-user SciJava application user interface.

V

validate(Module) - Method in class org.scijava.module.AbstractModuleItem

validate(Module) - Method in interface org.scijava.module.ModuleItem

Invokes this item's validation function, if any, on the given module.

Validated - Interface in org.scijava

An object whose validity can be confirmed after initialization.

ValidityPreprocessor - Class in org.scijava.module.process

A preprocessor plugin that verifies module validity.

ValidityPreprocessor() - Constructor for class org.scijava.module.process.ValidityPreprocessor

ValidityProblem - Exception in org.scijava

An exception used to record a validity problem with a Validated object.

ValidityProblem() - Constructor for exception org.scijava.ValidityProblem

ValidityProblem(String) - Constructor for exception org.scijava.ValidityProblem

ValidityProblem(String, Throwable) - Constructor for exception org.scijava.ValidityProblem

ValidityProblem(Throwable) - Constructor for exception org.scijava.ValidityProblem

value(String) - Static method in class org.scijava.log.LogLevel

Extracts the log level value from a string.

value() - Method in interface org.scijava.parse.Item

Gets the value of the item.

value - Variable in class org.scijava.script.ParameterObject

Deprecated.

valueOf(String) - Static method in enum org.scijava.console.OutputEvent.Source

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.scijava.display.event.DisplayUpdatedEvent.DisplayUpdateLevel

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.scijava.input.KeyCode

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.scijava.input.MouseCursor

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.scijava.io.handle.DataHandle.ByteOrder

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.scijava.ItemIO

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.scijava.ItemVisibility

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.scijava.thread.ThreadService.ThreadContext

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.scijava.ui.Arrangeable.Arrangement

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.scijava.ui.DialogPrompt.MessageType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.scijava.ui.DialogPrompt.OptionType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum org.scijava.ui.DialogPrompt.Result

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.scijava.console.OutputEvent.Source

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.scijava.display.event.DisplayUpdatedEvent.DisplayUpdateLevel

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.scijava.input.KeyCode

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.scijava.input.MouseCursor

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.scijava.io.handle.DataHandle.ByteOrder

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.scijava.ItemIO

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.scijava.ItemVisibility

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.scijava.thread.ThreadService.ThreadContext

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.scijava.ui.Arrangeable.Arrangement

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.scijava.ui.DialogPrompt.MessageType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.scijava.ui.DialogPrompt.OptionType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum org.scijava.ui.DialogPrompt.Result

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in class org.scijava.util.Colors

Gets the list of all preset colors.

vars() - Method in class org.scijava.script.ScriptREPL

Lists variables in the script context.

verbose - Static variable in class org.scijava.util.CheckSezpoz

Deprecated.

Versioned - Interface in org.scijava

An object that knows its version.

VersionUtils - Class in org.scijava.util

Useful methods for retrieving versions from JARs and POMs associated with Class objects.

VersionUtils() - Constructor for class org.scijava.util.VersionUtils

VERY_HIGH - Static variable in class org.scijava.Priority

Priority for items that strongly prefer to be sorted early.

VERY_HIGH_PRIORITY - Static variable in class org.scijava.Priority

Deprecated.

Use Priority.VERY_HIGH instead.

VERY_LOW - Static variable in class org.scijava.Priority

Priority for items that strongly prefer to be sorted late.

VERY_LOW_PRIORITY - Static variable in class org.scijava.Priority

Deprecated.

Use Priority.VERY_LOW instead.

view(DisplayWindow, Display<?>) - Method in class org.scijava.ui.headless.HeadlessDisplayViewer

view(DisplayWindow, Display<?>) - Method in class org.scijava.ui.viewer.AbstractDisplayViewer

view(UserInterface, Display<?>) - Method in interface org.scijava.ui.viewer.DisplayViewer

Begins viewing the given display.

view(DisplayWindow, Display<?>) - Method in interface org.scijava.ui.viewer.DisplayViewer

Begins viewing the given display.

VIOLET - Static variable in class org.scijava.util.Colors

W

waitFor(Future<M>) - Method in class org.scijava.module.DefaultModuleService

waitFor(Future<M>) - Method in interface org.scijava.module.ModuleService

Blocks until the given module is finished executing.

waitFor(Future<T>) - Method in class org.scijava.run.AbstractCodeRunner

waitFor() - Method in class org.scijava.task.DefaultTask

waitFor() - Method in interface org.scijava.task.Task

Waits for the task to complete.

walkHistory(String, boolean) - Method in class org.scijava.script.DefaultScriptInterpreter

walkHistory(String, boolean) - Method in interface org.scijava.script.ScriptInterpreter

Obtains the next/previous command in the command history.

warn(String) - Method in class org.scijava.app.DefaultStatusService

warn(String) - Method in interface org.scijava.app.StatusService

Issues a warning message.

warn(Object) - Method in interface org.scijava.log.Logger

warn(Throwable) - Method in interface org.scijava.log.Logger

warn(Object, Throwable) - Method in interface org.scijava.log.Logger

WARN - Static variable in class org.scijava.log.LogLevel

WARN - Static variable in interface org.scijava.log.LogService

Deprecated.

Use LogLevel.WARN.

WelcomeEvent - Class in org.scijava.welcome.event

Marker SciJavaEvent indicating the first time an application is run.

WelcomeEvent() - Constructor for class org.scijava.welcome.event.WelcomeEvent

WelcomeService - Interface in org.scijava.welcome

Interface for services to display the welcome greeting when the UI is shown for the first time.

WHEAT - Static variable in class org.scijava.util.Colors

WHITE - Static variable in class org.scijava.util.Colors

WHITESMOKE - Static variable in class org.scijava.util.Colors

widget() - Method in class org.scijava.AbstractGateway

widget() - Method in interface org.scijava.Gateway

Gets this application context's WidgetService.

WidgetModel - Interface in org.scijava.widget

The backing data model for a particular InputWidget.

widgets - Variable in class org.scijava.widget.AbstractInputPanel

Table of widgets.

WidgetService - Interface in org.scijava.widget

Interface for services that manage available InputWidgets.

width - Variable in class org.scijava.util.IntRect

width - Variable in class org.scijava.util.RealRect

wildcard() - Static method in class org.scijava.util.Types

Creates a new WildcardType with no upper or lower bounds (i.e., ?).

wildcard(Type, Type) - Static method in class org.scijava.util.Types

Creates a new WildcardType with the given upper and/or lower bound.

wildcard(Type[], Type[]) - Static method in class org.scijava.util.Types

Creates a new WildcardType with the given upper and/or lower bounds.

WinActivatedEvent - Class in org.scijava.display.event.window

An event indicating a display window has been activated.

WinActivatedEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinActivatedEvent

WinClosedEvent - Class in org.scijava.display.event.window

An event indicating a display window has been closed.

WinClosedEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinClosedEvent

WinClosingEvent - Class in org.scijava.display.event.window

An event indicating a display window is in the process of closing.

WinClosingEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinClosingEvent

WinDeactivatedEvent - Class in org.scijava.display.event.window

An event indicating a display window has been deactivated.

WinDeactivatedEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinDeactivatedEvent

WinDeiconifiedEvent - Class in org.scijava.display.event.window

An event indicating a display window was deiconified.

WinDeiconifiedEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinDeiconifiedEvent

WINDOW_LABEL - Static variable in class org.scijava.menu.MenuConstants

WINDOW_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants

WINDOW_WEIGHT - Static variable in class org.scijava.menu.MenuConstants

WinEvent - Class in org.scijava.display.event.window

An event indicating something has happened to a display window.

WinEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinEvent

WinIconifiedEvent - Class in org.scijava.display.event.window

An event indicating a display window was iconified.

WinIconifiedEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinIconifiedEvent

WinOpenedEvent - Class in org.scijava.display.event.window

An event indicating a display window has been opened.

WinOpenedEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinOpenedEvent

WrapperPlugin<D> - Interface in org.scijava.plugin

A plugin with a special "has-a" relationship (i.e., composition rather than inheritance) with a single data object of a particular type.

WrapperService<DT,PT extends WrapperPlugin<DT>> - Interface in org.scijava.plugin

A service for managing WrapperPlugins of a particular type.

write(AbstractIndexWriter.StreamFactory) - Method in class org.scijava.annotations.AbstractIndexWriter

write(File) - Method in class org.scijava.annotations.DirectoryIndexer

write(int) - Method in class org.scijava.console.MultiOutputStream

write(byte[], int, int) - Method in class org.scijava.console.MultiOutputStream

write(int) - Method in class org.scijava.download.MultiWriteHandle

write(byte[], int, int) - Method in class org.scijava.download.MultiWriteHandle

write(byte[], int, int) - Method in class org.scijava.io.handle.BytesHandle

write(int) - Method in class org.scijava.io.handle.BytesHandle

write(byte[]) - Method in interface org.scijava.io.handle.DataHandle

write(int) - Method in class org.scijava.io.handle.DataHandleOutputStream

write(byte[]) - Method in class org.scijava.io.handle.DataHandleOutputStream

write(byte[], int, int) - Method in class org.scijava.io.handle.DataHandleOutputStream

write(int) - Method in class org.scijava.io.handle.DummyHandle

write(byte[], int, int) - Method in class org.scijava.io.handle.DummyHandle

write(byte[]) - Method in class org.scijava.io.handle.FileHandle

write(byte[], int, int) - Method in class org.scijava.io.handle.FileHandle

write(int) - Method in class org.scijava.io.handle.FileHandle

write(int) - Method in class org.scijava.io.handle.ReadBufferDataHandle

write(byte[], int, int) - Method in class org.scijava.io.handle.ReadBufferDataHandle

write(int) - Method in class org.scijava.io.handle.WriteBufferDataHandle

write(byte[], int, int) - Method in class org.scijava.io.handle.WriteBufferDataHandle

write(int) - Method in class org.scijava.util.LineOutputStream

Adds a single byte to the current line buffer, or LineOutputStream.flush() the current line if it is a new-line character.

write(byte[]) - Method in class org.scijava.util.LineOutputStream

Adds bytes to the current line buffer.

write(byte[], int, int) - Method in class org.scijava.util.LineOutputStream

Adds bytes to the current line buffer.

writeBoolean(boolean) - Method in interface org.scijava.io.handle.DataHandle

writeBoolean(boolean) - Method in class org.scijava.io.handle.FileHandle

writeBuffer(DataHandle<Location>) - Method in interface org.scijava.io.handle.DataHandleService

Wraps the provided DataHandle in a write-only buffer for accelerated writing.

WriteBufferDataHandle - Class in org.scijava.io.handle

Wraps a DataHandle and acts as a write buffer.

WriteBufferDataHandle(DataHandle<Location>) - Constructor for class org.scijava.io.handle.WriteBufferDataHandle

Creates a WriteBufferDataHandle that wraps the given DataHandle, the default size for the buffer is used ( bytes).

WriteBufferDataHandle(DataHandle<Location>, int) - Constructor for class org.scijava.io.handle.WriteBufferDataHandle

Creates a WriteBufferDataHandle that wraps the given DataHandle

writeByte(int) - Method in interface org.scijava.io.handle.DataHandle

writeByte(int) - Method in class org.scijava.io.handle.FileHandle

writeBytes(String) - Method in interface org.scijava.io.handle.DataHandle

writeBytes(String) - Method in class org.scijava.io.handle.FileHandle

writeChar(int) - Method in interface org.scijava.io.handle.DataHandle

writeChar(int) - Method in class org.scijava.io.handle.FileHandle

writeChars(String) - Method in interface org.scijava.io.handle.DataHandle

writeChars(String) - Method in class org.scijava.io.handle.FileHandle

writeDouble(double) - Method in interface org.scijava.io.handle.DataHandle

writeDouble(double) - Method in class org.scijava.io.handle.FileHandle

writeFile(File, byte[]) - Static method in class org.scijava.util.FileUtils

Writes the given byte array to the specified file.

writeFloat(float) - Method in interface org.scijava.io.handle.DataHandle

writeFloat(float) - Method in class org.scijava.io.handle.FileHandle

writeHistory() - Method in class org.scijava.script.DefaultScriptInterpreter

writeHistory() - Method in interface org.scijava.script.ScriptInterpreter

Persists the history of the current script interpreter.

writeInt(int) - Method in interface org.scijava.io.handle.DataHandle

writeInt(int) - Method in class org.scijava.io.handle.FileHandle

writeLine(String) - Method in interface org.scijava.io.handle.DataHandle

Writes the provided string, followed by a newline character.

writeLong(long) - Method in interface org.scijava.io.handle.DataHandle

writeLong(long) - Method in class org.scijava.io.handle.FileHandle

writeMap(PrintStream, Object...) - Method in class org.scijava.annotations.AbstractIndexWriter

writeOnlyException() - Static method in class org.scijava.io.handle.DataHandles

writer - Variable in class org.scijava.script.AbstractScriptContext

writeShort(int) - Method in interface org.scijava.io.handle.DataHandle

writeShort(int) - Method in class org.scijava.io.handle.FileHandle

writeState(DataOutputStream) - Method in class org.scijava.util.MersenneTwisterFast

Writes the entire state of the MersenneTwister RNG to the stream

writeUTF(String) - Method in interface org.scijava.io.handle.DataHandle

writeUTF(String, DataOutput) - Static method in class org.scijava.io.handle.DataHandles

Writes a string to the specified DataOutput using modified UTF-8 encoding in a machine-independent manner.

writeUTF(String) - Method in class org.scijava.io.handle.FileHandle

writeXMLFile(Document, File) - Static method in class org.scijava.util.CheckSezpoz

Deprecated.

X

x - Variable in class org.scijava.util.IntCoords

x - Variable in class org.scijava.util.IntRect

x - Variable in class org.scijava.util.RealCoords

x - Variable in class org.scijava.util.RealRect

XML - Class in org.scijava.util

Helper class for working with XML documents.

XML(File) - Constructor for class org.scijava.util.XML

Parses XML from the given file.

XML(URL) - Constructor for class org.scijava.util.XML

Parses XML from the given URL.

XML(InputStream) - Constructor for class org.scijava.util.XML

Parses XML from the given input stream.

XML(String) - Constructor for class org.scijava.util.XML

Parses XML from the given string.

XML(Document) - Constructor for class org.scijava.util.XML

Creates an XML object for an existing document.

XML(String, Document) - Constructor for class org.scijava.util.XML

Creates an XML object for an existing document.

xpath(String) - Method in class org.scijava.util.XML

Obtains the nodes identified by the given XPath expression.

Y

y - Variable in class org.scijava.util.IntCoords

y - Variable in class org.scijava.util.IntRect

y - Variable in class org.scijava.util.RealCoords

y - Variable in class org.scijava.util.RealRect

YELLOW - Static variable in class org.scijava.util.Colors

YELLOWGREEN - Static variable in class org.scijava.util.Colors

A B C D E F G H I J K L M N O P Q R S T U V W X Y