object DemuxFastqs
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val
DefaultDemuxMetricsFileName: String
The name of the metrics file if none is given by the user.
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val
UnmatchedSampleId: String
The name of the sample for unmatched reads.
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def
demultiplexingIterator(sources: Seq[FastqSource], demultiplexer: FastqDemultiplexer, threads: Int, batchSize: Int = DemuxBatchRecordsSize): Iterator[DemuxResult]
Creates a demultiplexing iterator that performs demultiplexing in parallel.
Creates a demultiplexing iterator that performs demultiplexing in parallel.
- sources
the FASTQ sources, one per read.
- demultiplexer
the demultiplexer to use. The demultiplexer's FastqDemultiplexer.demultiplex() method expects the same number of reads as sources.
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