case class FastqRecord(name: String, bases: String, quals: String, comment: Option[String] = None, readNumber: Option[Int] = None) extends Product with Serializable

Represents a record that can be read from or written to a fastq file.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. FastqRecord
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
Implicitly
  1. by any2stringadd
  2. by StringFormat
  3. by Ensuring
  4. by ArrowAssoc
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new FastqRecord(name: String, bases: String, quals: String, comment: Option[String] = None, readNumber: Option[Int] = None)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. def +(other: String): String
    Implicit
    This member is added by an implicit conversion from FastqRecord to any2stringadd[FastqRecord] performed by method any2stringadd in scala.Predef.
    Definition Classes
    any2stringadd
  4. def ->[B](y: B): (FastqRecord, B)
    Implicit
    This member is added by an implicit conversion from FastqRecord to ArrowAssoc[FastqRecord] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc
    Annotations
    @inline()
  5. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  6. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  7. val bases: String
  8. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  9. val comment: Option[String]
  10. def ensuring(cond: (FastqRecord) ⇒ Boolean, msg: ⇒ Any): FastqRecord
    Implicit
    This member is added by an implicit conversion from FastqRecord to Ensuring[FastqRecord] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  11. def ensuring(cond: (FastqRecord) ⇒ Boolean): FastqRecord
    Implicit
    This member is added by an implicit conversion from FastqRecord to Ensuring[FastqRecord] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  12. def ensuring(cond: Boolean, msg: ⇒ Any): FastqRecord
    Implicit
    This member is added by an implicit conversion from FastqRecord to Ensuring[FastqRecord] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  13. def ensuring(cond: Boolean): FastqRecord
    Implicit
    This member is added by an implicit conversion from FastqRecord to Ensuring[FastqRecord] performed by method Ensuring in scala.Predef.
    Definition Classes
    Ensuring
  14. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  15. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  16. def formatted(fmtstr: String): String
    Implicit
    This member is added by an implicit conversion from FastqRecord to StringFormat[FastqRecord] performed by method StringFormat in scala.Predef.
    Definition Classes
    StringFormat
    Annotations
    @inline()
  17. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
  18. def header: String

    Constructs the header line from the name, read number and comment.

  19. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  20. def length: Int

    Returns the length of the sequence represented by this record.

  21. val name: String
  22. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  23. final def notify(): Unit
    Definition Classes
    AnyRef
  24. final def notifyAll(): Unit
    Definition Classes
    AnyRef
  25. val quals: String
  26. val readNumber: Option[Int]
  27. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  28. def toString(): String
    Definition Classes
    FastqRecord → AnyRef → Any
  29. def trimmedTo(len: Int): FastqRecord

    Trims the record to a given length.

    Trims the record to a given length. If the record is already shorter than the length provided, returns a record at the current length.

    len

    the length to trim to

    returns

    a record with length <= len

  30. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  31. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  32. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  33. def →[B](y: B): (FastqRecord, B)
    Implicit
    This member is added by an implicit conversion from FastqRecord to ArrowAssoc[FastqRecord] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion any2stringadd from FastqRecord to any2stringadd[FastqRecord]

Inherited by implicit conversion StringFormat from FastqRecord to StringFormat[FastqRecord]

Inherited by implicit conversion Ensuring from FastqRecord to Ensuring[FastqRecord]

Inherited by implicit conversion ArrowAssoc from FastqRecord to ArrowAssoc[FastqRecord]

Ungrouped