case class ProgressLogger(logger: Logger, noun: String = "records", verb: String = "processed", unit: Int = 1000 * 1000) extends AbstractProgressLogger with Product with Serializable
A subclass of HTSJDK's progress logger that uses fgbio's logging system.
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- ProgressLoggerInterface
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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def
+(other: String): String
- Implicit
- This member is added by an implicit conversion from ProgressLogger to any2stringadd[ProgressLogger] performed by method any2stringadd in scala.Predef.
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def
->[B](y: B): (ProgressLogger, B)
- Implicit
- This member is added by an implicit conversion from ProgressLogger to ArrowAssoc[ProgressLogger] performed by method ArrowAssoc in scala.Predef.
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final
def
==(arg0: Any): Boolean
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def
asInstanceOf[T0]: T0
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def
clone(): AnyRef
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def
ensuring(cond: (ProgressLogger) ⇒ Boolean, msg: ⇒ Any): ProgressLogger
- Implicit
- This member is added by an implicit conversion from ProgressLogger to Ensuring[ProgressLogger] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
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def
ensuring(cond: (ProgressLogger) ⇒ Boolean): ProgressLogger
- Implicit
- This member is added by an implicit conversion from ProgressLogger to Ensuring[ProgressLogger] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
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def
ensuring(cond: Boolean, msg: ⇒ Any): ProgressLogger
- Implicit
- This member is added by an implicit conversion from ProgressLogger to Ensuring[ProgressLogger] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
-
def
ensuring(cond: Boolean): ProgressLogger
- Implicit
- This member is added by an implicit conversion from ProgressLogger to Ensuring[ProgressLogger] performed by method Ensuring in scala.Predef.
- Definition Classes
- Ensuring
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final
def
eq(arg0: AnyRef): Boolean
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def
finalize(): Unit
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- @throws( classOf[java.lang.Throwable] )
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def
formatted(fmtstr: String): String
- Implicit
- This member is added by an implicit conversion from ProgressLogger to StringFormat[ProgressLogger] performed by method StringFormat in scala.Predef.
- Definition Classes
- StringFormat
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- @inline()
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final
def
getClass(): Class[_]
- Definition Classes
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- @native()
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def
getCount(): Long
- Definition Classes
- AbstractProgressLogger
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def
getElapsedSeconds(): Long
- Definition Classes
- AbstractProgressLogger
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final
def
isInstanceOf[T0]: Boolean
- Definition Classes
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- def log(message: String*): Unit
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def
log(): Boolean
- Definition Classes
- AbstractProgressLogger
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def
logLast(): Boolean
Logs the last record if it wasn't already logged.
- val logger: Logger
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final
def
ne(arg0: AnyRef): Boolean
- Definition Classes
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
- Definition Classes
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- @native()
- val noun: String
- def record(locus: Locatable): Boolean
- def record(variant: Variant): Boolean
- def record(rec: SamRecord): Boolean
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def
record(): Boolean
Method to use to record progress when genome location isn't available or relevant.
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def
record(arg0: <repeated...>[SAMRecord]): Boolean
- Definition Classes
- AbstractProgressLogger → ProgressLoggerInterface
- Annotations
- @transient()
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def
record(arg0: SAMRecord): Boolean
- Definition Classes
- AbstractProgressLogger → ProgressLoggerInterface
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def
record(arg0: String, arg1: Int): Boolean
- Definition Classes
- AbstractProgressLogger → ProgressLoggerInterface
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def
record(arg0: String, arg1: Int, arg2: String): Boolean
- Attributes
- protected[htsjdk.samtools.util]
- Definition Classes
- AbstractProgressLogger
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def
reset(): Unit
- Definition Classes
- AbstractProgressLogger → ProgressLoggerInterface
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final
def
synchronized[T0](arg0: ⇒ T0): T0
- Definition Classes
- AnyRef
- val unit: Int
- val verb: String
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final
def
wait(): Unit
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final
def
wait(arg0: Long, arg1: Int): Unit
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- @throws( ... )
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final
def
wait(arg0: Long): Unit
- Definition Classes
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- @throws( ... ) @native()
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def
→[B](y: B): (ProgressLogger, B)
- Implicit
- This member is added by an implicit conversion from ProgressLogger to ArrowAssoc[ProgressLogger] performed by method ArrowAssoc in scala.Predef.
- Definition Classes
- ArrowAssoc