Class BCF2FieldWriter.GenotypesWriter
java.lang.Object
htsjdk.variant.variantcontext.writer.BCF2FieldWriter
htsjdk.variant.variantcontext.writer.BCF2FieldWriter.GenotypesWriter
- Direct Known Subclasses:
BCF2FieldWriter.GTWriter
,BCF2FieldWriter.IGFGenotypesWriter
,BCF2FieldWriter.IntegerTypeGenotypesWriter
,BCF2FieldWriter.StaticallyTypeGenotypesWriter
- Enclosing class:
- BCF2FieldWriter
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Nested Class Summary
Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter
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Constructor Summary
ModifierConstructorDescriptionprotected
GenotypesWriter
(VCFHeader header, BCF2FieldEncoder fieldEncoder) -
Method Summary
Modifier and TypeMethodDescriptionvoid
addGenotype
(BCF2Encoder encoder, VariantContext vc, Genotype g) protected int
numElements
(VariantContext vc, Genotype g) void
start
(BCF2Encoder encoder, VariantContext vc) Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter
done, getField, getFieldEncoder, getHeader, toString
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Constructor Details
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GenotypesWriter
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Method Details
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start
- Overrides:
start
in classBCF2FieldWriter
- Throws:
IOException
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addGenotype
- Throws:
IOException
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numElements
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