Package htsjdk.variant.variantcontext.writer

Class BCF2FieldWriter.SiteWriter

java.lang.Object

htsjdk.variant.variantcontext.writer.BCF2FieldWriter

htsjdk.variant.variantcontext.writer.BCF2FieldWriter.SiteWriter

Direct Known Subclasses:

BCF2FieldWriter.GenericSiteWriter

Enclosing class:

BCF2FieldWriter

public abstract static class BCF2FieldWriter.SiteWriter
extends BCF2FieldWriter

Nested Class Summary

Nested classes/interfaces inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

BCF2FieldWriter.FTGenotypesWriter, BCF2FieldWriter.GenericSiteWriter, BCF2FieldWriter.GenotypesWriter, BCF2FieldWriter.GTWriter, BCF2FieldWriter.IGFGenotypesWriter, BCF2FieldWriter.IntegerTypeGenotypesWriter, BCF2FieldWriter.SiteWriter, BCF2FieldWriter.StaticallyTypeGenotypesWriter

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	SiteWriter(VCFHeader header, BCF2FieldEncoder fieldEncoder)

Method Summary

Modifier and Type	Method	Description
abstract void	site(BCF2Encoder encoder, VariantContext vc)

Methods inherited from class htsjdk.variant.variantcontext.writer.BCF2FieldWriter

done, getField, getFieldEncoder, getHeader, start, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

SiteWriter

protected SiteWriter(VCFHeader header,
 BCF2FieldEncoder fieldEncoder)

Method Details

site

public abstract void site(BCF2Encoder encoder,
 VariantContext vc)
                   throws IOException

Throws:

IOException