Uses of Class
de.charite.compbio.jannovar.hgvs.nts.NucleotideSeqDescription
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Packages that use NucleotideSeqDescription Package Description de.charite.compbio.jannovar.hgvs.legacy de.charite.compbio.jannovar.hgvs.nts.change -
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Uses of NucleotideSeqDescription in de.charite.compbio.jannovar.hgvs.legacy
Methods in de.charite.compbio.jannovar.hgvs.legacy that return NucleotideSeqDescription Modifier and Type Method Description NucleotideSeqDescription
LegacyDeletion. getDeletedSeq()
NucleotideSeqDescription
LegacyIndel. getDeletedSeq()
NucleotideSeqDescription
LegacyInsertion. getDeletedSeq()
NucleotideSeqDescription
LegacyIndel. getInsertedSeq()
Constructors in de.charite.compbio.jannovar.hgvs.legacy with parameters of type NucleotideSeqDescription Constructor Description LegacyDeletion(LegacyLocation location, NucleotideSeqDescription deletedSeq)
Construct new legacy deletion with the given valuesLegacyIndel(LegacyLocation location, NucleotideSeqDescription deletedSeq, NucleotideSeqDescription insertedSeq)
Construct new legacy substitution with the given valuesLegacyInsertion(LegacyLocation location, NucleotideSeqDescription insertedSeq)
Construct new legacy substitution with the given values -
Uses of NucleotideSeqDescription in de.charite.compbio.jannovar.hgvs.nts.change
Methods in de.charite.compbio.jannovar.hgvs.nts.change that return NucleotideSeqDescription Modifier and Type Method Description NucleotideSeqDescription
NucleotideIndel. getDelSeq()
NucleotideSeqDescription
NucleotideIndel. getInsSeq()
NucleotideSeqDescription
NucleotideDeletion. getSeq()
NucleotideSeqDescription
NucleotideDuplication. getSeq()
NucleotideSeqDescription
NucleotideInsertion. getSeq()
NucleotideSeqDescription
NucleotideInversion. getSeq()
NucleotideSeqDescription
NucleotideUnchanged. getSeq()
Methods in de.charite.compbio.jannovar.hgvs.nts.change with parameters of type NucleotideSeqDescription Modifier and Type Method Description static NucleotideDeletion
NucleotideDeletion. build(boolean onlyPredicted, int firstPos, int lastPos, NucleotideSeqDescription seq)
static NucleotideDuplication
NucleotideDuplication. build(boolean onlyPredicted, int firstPos, int lastPos, NucleotideSeqDescription seq)
static NucleotideInversion
NucleotideInversion. build(boolean onlyPredicted, int firstPos, int lastPos, NucleotideSeqDescription seq)
static NucleotideUnchanged
NucleotideUnchanged. build(boolean onlyPredicted, int firstPos, int lastPos, NucleotideSeqDescription seq)
static NucleotideDeletion
NucleotideDeletion. buildWithOffset(boolean onlyPredicted, int firstPos, int firstPosOffset, int lastPos, int lastPosOffset, NucleotideSeqDescription seq)
static NucleotideDuplication
NucleotideDuplication. buildWithOffset(boolean onlyPredicted, int firstPos, int firstPosOffset, int lastPos, int lastPosOffset, NucleotideSeqDescription seq)
static NucleotideInversion
NucleotideInversion. buildWithOffset(boolean onlyPredicted, int firstPos, int firstPosOffset, int lastPos, int lastPosOffset, NucleotideSeqDescription seq)
static NucleotideUnchanged
NucleotideUnchanged. buildWithOffset(boolean onlyPredicted, int firstPos, int firstPosOffset, int lastPos, int lastPosOffset, NucleotideSeqDescription seq)
static NucleotideIndel
NucleotideIndel. buildWithOffsetWithSeqDescription(boolean onlyPredicted, int firstPos, int firstOffset, int lastPos, int lastOffset, NucleotideSeqDescription delDesc, NucleotideSeqDescription insDesc)
Build with sequence descriptionstatic NucleotideIndel
NucleotideIndel. buildWithSeqDescription(boolean onlyPredicted, int firstPos, int lastPos, NucleotideSeqDescription delDesc, NucleotideSeqDescription insDesc)
Build without offset and with sequence descriptionConstructors in de.charite.compbio.jannovar.hgvs.nts.change with parameters of type NucleotideSeqDescription Constructor Description NucleotideDeletion(boolean onlyPredicted, NucleotideRange range, NucleotideSeqDescription seq)
NucleotideDuplication(boolean onlyPredicted, NucleotideRange range, NucleotideSeqDescription seq)
NucleotideIndel(boolean onlyPredicted, NucleotideRange range, NucleotideSeqDescription delSeq, NucleotideSeqDescription insSeq)
NucleotideInsertion(boolean onlyPredicted, NucleotideRange position, NucleotideSeqDescription seq)
NucleotideInversion(boolean onlyPredicted, NucleotideRange range, NucleotideSeqDescription seq)
NucleotideUnchanged(boolean onlyPredicted, NucleotideRange range, NucleotideSeqDescription seq)
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