Uses of Class
net.maizegenetics.dna.snp.Translate

Packages that use Translate

Package	Description
net.maizegenetics.dna.snp	Data structures for holding SNP and indel variation across taxa (samples) and genomic positions.
net.maizegenetics.dna.snp.genotypecall	Genotype calls for all the taxa and genomic positions scored.
net.maizegenetics.dna.snp.score	Support for site scores (for example quality scores or imputation accuracy).

Uses of Translate in net.maizegenetics.dna.snp

Subclasses of Translate in net.maizegenetics.dna.snp

Modifier and Type	Class and Description
class	TranslateNegative

Methods in net.maizegenetics.dna.snp that return Translate

Modifier and Type	Method and Description
static Translate	TranslateBuilder.getInstance(TranslateIndex translateTaxa, TranslateIndex translateSite)
static Translate	TranslateBuilder.getInstance(Translate base, Translate translate)

Methods in net.maizegenetics.dna.snp with parameters of type Translate

Modifier and Type	Method and Description
static PositionList	FilterGenotypeTable.createPositions(GenotypeTable genotypes, Translate translate)
static TaxaList	FilterGenotypeTable.createTaxa(GenotypeTable genotypes, Translate translate)
static GenotypeTable	FilterGenotypeTable.getInstance(GenotypeTable base, TaxaList taxa, PositionList positions, Translate translate)
static Translate	TranslateBuilder.getInstance(Translate base, Translate translate)

Uses of Translate in net.maizegenetics.dna.snp.genotypecall

Methods in net.maizegenetics.dna.snp.genotypecall that return types with arguments of type Translate

Modifier and Type	Method and Description
static Tuple<GenotypeCallTable,Translate>	GenotypeCallTableBuilder.getFilteredInstance(GenotypeCallTable genotype, Translate translate)

Methods in net.maizegenetics.dna.snp.genotypecall with parameters of type Translate

Modifier and Type	Method and Description
static Tuple<GenotypeCallTable,Translate>	GenotypeCallTableBuilder.getFilteredInstance(GenotypeCallTable genotype, Translate translate)

Uses of Translate in net.maizegenetics.dna.snp.score

Methods in net.maizegenetics.dna.snp.score with parameters of type Translate

Modifier and Type	Method and Description
static AlleleDepth	AlleleDepthBuilder.getFilteredInstance(AlleleDepth base, Translate translate) This creates a filtered AlleleDepth.
static AlleleProbability	AlleleProbabilityBuilder.getFilteredInstance(AlleleProbability base, Translate translate)
static Dosage	DosageBuilder.getFilteredInstance(Dosage base, Translate translate)
static ReferenceProbability	ReferenceProbabilityBuilder.getFilteredInstance(ReferenceProbability base, Translate translate)