net.maizegenetics.dna.snp.score

Class ReferenceProbabilityBuilder

java.lang.Object

net.maizegenetics.dna.snp.score.ReferenceProbabilityBuilder

public class ReferenceProbabilityBuilder
extends Object

Author:

Terry Casstevens

Method Summary

Modifier and Type	Method and Description
ReferenceProbabilityBuilder	addTaxon(int taxon, float[] values)
ReferenceProbability	build()
static ReferenceProbability	getFilteredInstance(ReferenceProbability base, Translate translate)
static ReferenceProbability	getInstance(ch.systemsx.cisd.hdf5.IHDF5Reader reader)
static ReferenceProbabilityBuilder	getInstance(ch.systemsx.cisd.hdf5.IHDF5Writer writer, int numTaxa, int numSites, TaxaList taxaList)
static ReferenceProbabilityBuilder	getInstance(int numTaxa, int numSites, TaxaList taxaList)
static ReferenceProbability	getMaskInstance(ReferenceProbability base, MaskMatrix mask)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

getInstance

public static ReferenceProbabilityBuilder getInstance(ch.systemsx.cisd.hdf5.IHDF5Writer writer,
                                                      int numTaxa,
                                                      int numSites,
                                                      TaxaList taxaList)

getInstance

public static ReferenceProbabilityBuilder getInstance(int numTaxa,
                                                      int numSites,
                                                      TaxaList taxaList)

getFilteredInstance

public static ReferenceProbability getFilteredInstance(ReferenceProbability base,
                                                       Translate translate)

getMaskInstance

public static ReferenceProbability getMaskInstance(ReferenceProbability base,
                                                   MaskMatrix mask)

getInstance

public static ReferenceProbability getInstance(ch.systemsx.cisd.hdf5.IHDF5Reader reader)

addTaxon

public ReferenceProbabilityBuilder addTaxon(int taxon,
                                            float[] values)

build

public ReferenceProbability build()