net.maizegenetics.dna.snp.score

Class ReferenceProbability

java.lang.Object

net.maizegenetics.dna.snp.score.ReferenceProbability

All Implemented Interfaces:

SiteScore

Direct Known Subclasses:

FilterReferenceProbability, MaskReferenceProbability

public class ReferenceProbability
extends Object
implements SiteScore

Author:

Terry Casstevens

Nested Class Summary

Nested classes/interfaces inherited from interface net.maizegenetics.dna.snp.score.SiteScore

SiteScore.SITE_SCORE_TYPE

Method Summary

Modifier and Type	Method and Description
int	numSites()
int	numTaxa()
Set<SiteScore.SITE_SCORE_TYPE>	siteScoreTypes() Return the site scores types.
float	value(int taxon, int site)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

value

public float value(int taxon,
                   int site)

siteScoreTypes

public Set<SiteScore.SITE_SCORE_TYPE> siteScoreTypes()

Description copied from interface: SiteScore

Return the site scores types.

Specified by:

siteScoreTypes in interface SiteScore

Returns:

site score types.

numTaxa

public int numTaxa()

Specified by:

numTaxa in interface SiteScore

numSites

public int numSites()

Specified by:

numSites in interface SiteScore