net.maizegenetics.dna.snp.score

Interface SiteScore

All Known Implementing Classes:

AlleleDepth, AlleleProbability, Dosage, FilterAlleleDepth, FilterAlleleProbability, FilterDosage, FilterHDF5AlleleDepth, FilterReferenceProbability, HDF5AlleleDepth, MaskAlleleDepth, MaskAlleleProbability, MaskDosage, MaskReferenceProbability, ReferenceProbability

public interface SiteScore

Author:

Terry Casstevens

Nested Class Summary

Nested Classes

Modifier and Type	Interface and Description
static class	SiteScore.SITE_SCORE_TYPE

Method Summary

Modifier and Type	Method and Description
int	numSites()
int	numTaxa()
Set<SiteScore.SITE_SCORE_TYPE>	siteScoreTypes() Return the site scores types.

Method Detail

siteScoreTypes

Set<SiteScore.SITE_SCORE_TYPE> siteScoreTypes()

Return the site scores types.

Returns:

site score types.

numTaxa

int numTaxa()

numSites

int numSites()