ExtrasTables
recalibration
empiricalErrorProbability
Observation
empiricalQuality
Observation
empty
RecordGroupDictionary
SequenceDictionary
DuplicateMetrics
Aggregate
Observation
emptyFailedQuality
FlagStatMetrics
emptyFn
FullOuterShuffleRegionJoin
InnerShuffleRegionJoin
InnerShuffleRegionJoinAndGroupByLeft
LeftOuterShuffleRegionJoin
RightOuterShuffleRegionJoin
RightOuterShuffleRegionJoinAndGroupByLeft
ShuffleRegionJoin
emptyPassedQuality
FlagStatMetrics
enableVisitLogging
BaseQualityRecalibration
encoder
AvroSerializer
encoding
IntervalListReader
end
Coverage
ReferenceRegion
AlignmentRecordField
FeatureField
GenotypeField
VariantField
MdTag
endpoints
NonoverlappingRegions
ensemblGeneId
DatabaseVariantAnnotationField
ensemblTranscriptIds
DatabaseVariantAnnotationField
entries
ObservationTable
equals
RecordGroup
SequenceDictionary
SequenceRecord
CovariateKey
CovariateSpace
CycleCovariate
DinucCovariate
Observation
RichVariant
MdTag
QualityScore
errorProbability
QualityScore
errorProbabilityToPhred
PhredUtils
exonId
FeatureField
expectedMismatches
Aggregate
extract
NucleotideContigFragmentRDD
ReferenceContigMap
ReferenceFile
TwoBitFile
extras
CovariateKey
CovariateSpace
extrasTables
ExtrasTables