class Tab6InFormatter extends InFormatter[Fragment, Fragment, FragmentDataset, Tab6InFormatter] with Logging
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def
write(os: OutputStream, iter: Iterator[Fragment]): Unit
Writes alignments to an output stream in Bowtie tab6 format.
Writes alignments to an output stream in Bowtie tab6 format.
In Bowtie tab6 format, each alignment or pair is on a single line. An unpaired alignment line is [name]\t[seq]\t[qual]\n. For paired-end alignments, the second end can have a different name from the first: [name1]\t[seq1]\t[qual1]\t[name2]\t[seq2]\t[qual2]\n.
- os
An OutputStream connected to a process we are piping to.
- iter
An iterator of records to write.
- Definition Classes
- Tab6InFormatter → InFormatter