case class AssessPhasingMetric(num_called: Long = 0, num_phased: Long = 0, num_truth: Long = 0, num_truth_phased: Long = 0, num_called_with_truth_phased: Long = 0, num_phased_with_truth_phased: Long = 0, num_truth_phased_in_called_block: Long = 0, num_both_phased_in_called_block: Long = 0, num_short_switch_errors: Long = 0, num_long_switch_errors: Long = 0, num_switch_sites: Long = 0, num_illumina_point_switch_errors: Long = 0, num_illumina_long_switch_errors: Long = 0, num_illumina_switch_sites: Long = 0, frac_phased: Double = 0, frac_phased_with_truth_phased: Double = 0, frac_truth_phased_in_called_block: Double = 0, frac_phased_with_truth_phased_in_called_block: Double = 0, short_accuracy: Double = 0, long_accuracy: Double = 0, illumina_point_accuracy: Double = 0, illumina_long_accuracy: Double = 0, mean_called_block_length: Double = 0, median_called_block_length: Double = 0, stddev_called_block_length: Double = 0, n50_called_block_length: Double = 0, n90_called_block_length: Double = 0, l50_called: Double = 0, mean_truth_block_length: Double = 0, median_truth_block_length: Double = 0, stddev_truth_block_length: Double = 0, n50_truth_block_length: Double = 0, n90_truth_block_length: Double = 0, l50_truth: Double = 0) extends Metric with Product with Serializable

Metrics produced by AssessPhasing describing various statistics assessing the performance of phasing variants relative to a known set of phased variant calls. Included are methods for assessing sensitivity and accuracy from a number of previous papers (ex. http://dx.doi.org/10.1038%2Fng.3119).

The N50, N90, and L50 statistics are defined as follows: - The N50 is the longest block length such that the bases covered by all blocks this length and longer are at least 50% of the # of bases covered by all blocks. - The N90 is the longest block length such that the bases covered by all blocks this length and longer are at least 90% of the # of bases covered by all blocks. - The L50 is the smallest number of blocks such that the sum of the lengths of the blocks is >= 50% of the sum of the lengths of all blocks.

num_called

The number of variants called.

num_phased

The number of variants called with phase.

num_truth

The number of variants with known truth genotypes.

num_truth_phased

The number of variants with known truth genotypes with phase.

num_called_with_truth_phased

The number of variants called that had a known phased genotype.

num_phased_with_truth_phased

The number of variants called with phase that had a known phased genotype.

num_truth_phased_in_called_block

The number of known phased variants that were in a called phased block.

num_both_phased_in_called_block

The number of called phase variants that had a known phased genotype in a called phased block.

num_short_switch_errors

The number of short switch errors (isolated switch errors).

num_long_switch_errors

The number of long switch errors (# of runs of consecutive switch errors).

num_switch_sites

The number of sites that could be (short or long) switch errors (i.e. the # of sites with both known and called phased variants).

num_illumina_point_switch_errors

The number of point switch errors (defined in http://dx.doi.org/10.1038%2Fng.3119).

num_illumina_long_switch_errors

The number of long switch errors (defined in http://dx.doi.org/10.1038%2Fng.3119).

num_illumina_switch_sites

The number of sites that could be (point or long) switch errors (defined in http://dx.doi.org/10.1038%2Fng.3119).

frac_phased

The fraction of called variants with phase.

frac_phased_with_truth_phased

The fraction of known phased variants called with phase.

frac_truth_phased_in_called_block

The fraction of phased known genotypes in a called phased block.

frac_phased_with_truth_phased_in_called_block

The fraction of called phased variants that had a known phased genotype in a called phased block.

short_accuracy

The fraction of switch sites without short switch errors (1 - (num_short_switch_errors / num_switch_sites)).

long_accuracy

The fraction of switch sites without long switch errors (1 - (num_long_switch_errors / num_switch_sites)).

illumina_point_accuracy

The fraction of switch sites without point switch errors according to the Illumina method defining switch sites and errors (1 - (num_illumina_point_switch_errors / num_illumina_switch_sites )).

illumina_long_accuracy

The fraction of switch sites wihtout long switch errors according to the Illumina method defining switch sites and errors (1 - (num_illumina_long_switch_errors / num_illumina_switch_sites )).

mean_called_block_length

The mean phased block length in the callset.

median_called_block_length

The median phased block length in the callset.

stddev_called_block_length

The standard deviation of the phased block length in the callset.

n50_called_block_length

The N50 of the phased block length in the callset.

n90_called_block_length

The N90 of the phased block length in the callset.

l50_called

The L50 of the phased block length in the callset.

mean_truth_block_length

The mean phased block length in the truth.

median_truth_block_length

The median phased block length in the truth.

stddev_truth_block_length

The standard deviation of the phased block length in the truth.

n50_truth_block_length

The N50 of the phased block length in the truth.

n90_truth_block_length

The N90 of the phased block length in the callset.

l50_truth

The L50 of the phased block length in the callset.

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Instance Constructors

  1. new AssessPhasingMetric(num_called: Long = 0, num_phased: Long = 0, num_truth: Long = 0, num_truth_phased: Long = 0, num_called_with_truth_phased: Long = 0, num_phased_with_truth_phased: Long = 0, num_truth_phased_in_called_block: Long = 0, num_both_phased_in_called_block: Long = 0, num_short_switch_errors: Long = 0, num_long_switch_errors: Long = 0, num_switch_sites: Long = 0, num_illumina_point_switch_errors: Long = 0, num_illumina_long_switch_errors: Long = 0, num_illumina_switch_sites: Long = 0, frac_phased: Double = 0, frac_phased_with_truth_phased: Double = 0, frac_truth_phased_in_called_block: Double = 0, frac_phased_with_truth_phased_in_called_block: Double = 0, short_accuracy: Double = 0, long_accuracy: Double = 0, illumina_point_accuracy: Double = 0, illumina_long_accuracy: Double = 0, mean_called_block_length: Double = 0, median_called_block_length: Double = 0, stddev_called_block_length: Double = 0, n50_called_block_length: Double = 0, n90_called_block_length: Double = 0, l50_called: Double = 0, mean_truth_block_length: Double = 0, median_truth_block_length: Double = 0, stddev_truth_block_length: Double = 0, n50_truth_block_length: Double = 0, n90_truth_block_length: Double = 0, l50_truth: Double = 0)

    num_called

    The number of variants called.

    num_phased

    The number of variants called with phase.

    num_truth

    The number of variants with known truth genotypes.

    num_truth_phased

    The number of variants with known truth genotypes with phase.

    num_called_with_truth_phased

    The number of variants called that had a known phased genotype.

    num_phased_with_truth_phased

    The number of variants called with phase that had a known phased genotype.

    num_truth_phased_in_called_block

    The number of known phased variants that were in a called phased block.

    num_both_phased_in_called_block

    The number of called phase variants that had a known phased genotype in a called phased block.

    num_short_switch_errors

    The number of short switch errors (isolated switch errors).

    num_long_switch_errors

    The number of long switch errors (# of runs of consecutive switch errors).

    num_switch_sites

    The number of sites that could be (short or long) switch errors (i.e. the # of sites with both known and called phased variants).

    num_illumina_point_switch_errors

    The number of point switch errors (defined in http://dx.doi.org/10.1038%2Fng.3119).

    num_illumina_long_switch_errors

    The number of long switch errors (defined in http://dx.doi.org/10.1038%2Fng.3119).

    num_illumina_switch_sites

    The number of sites that could be (point or long) switch errors (defined in http://dx.doi.org/10.1038%2Fng.3119).

    frac_phased

    The fraction of called variants with phase.

    frac_phased_with_truth_phased

    The fraction of known phased variants called with phase.

    frac_truth_phased_in_called_block

    The fraction of phased known genotypes in a called phased block.

    frac_phased_with_truth_phased_in_called_block

    The fraction of called phased variants that had a known phased genotype in a called phased block.

    short_accuracy

    The fraction of switch sites without short switch errors (1 - (num_short_switch_errors / num_switch_sites)).

    long_accuracy

    The fraction of switch sites without long switch errors (1 - (num_long_switch_errors / num_switch_sites)).

    illumina_point_accuracy

    The fraction of switch sites without point switch errors according to the Illumina method defining switch sites and errors (1 - (num_illumina_point_switch_errors / num_illumina_switch_sites )).

    illumina_long_accuracy

    The fraction of switch sites wihtout long switch errors according to the Illumina method defining switch sites and errors (1 - (num_illumina_long_switch_errors / num_illumina_switch_sites )).

    mean_called_block_length

    The mean phased block length in the callset.

    median_called_block_length

    The median phased block length in the callset.

    stddev_called_block_length

    The standard deviation of the phased block length in the callset.

    n50_called_block_length

    The N50 of the phased block length in the callset.

    n90_called_block_length

    The N90 of the phased block length in the callset.

    l50_called

    The L50 of the phased block length in the callset.

    mean_truth_block_length

    The mean phased block length in the truth.

    median_truth_block_length

    The median phased block length in the truth.

    stddev_truth_block_length

    The standard deviation of the phased block length in the truth.

    n50_truth_block_length

    The N50 of the phased block length in the truth.

    n90_truth_block_length

    The N90 of the phased block length in the callset.

    l50_truth

    The L50 of the phased block length in the callset.

Type Members

  1. type Self = Iterable[(String, String)]
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  2. class WithFilter extends FilterMonadic[A, Repr]
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  1. final def !=(arg0: Any): Boolean
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  2. final def ##(): Int
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  3. def +(other: String): String
    Implicit
    This member is added by an implicit conversion from AssessPhasingMetric to any2stringadd[AssessPhasingMetric] performed by method any2stringadd in scala.Predef.
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  4. def ++[B >: (String, String), That](that: GenTraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
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  7. def ->[B](y: B): (AssessPhasingMetric, B)
    Implicit
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  8. def /:[B](z: B)(op: (B, (String, String)) ⇒ B): B
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  9. def :\[B](z: B)(op: ((String, String), B) ⇒ B): B
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  10. final def ==(arg0: Any): Boolean
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  11. def addString(b: StringBuilder): StringBuilder
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  12. def addString(b: StringBuilder, sep: String): StringBuilder
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  13. def addString(b: StringBuilder, start: String, sep: String, end: String): StringBuilder
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  15. def apply(name: String): String

    Gets the value of the field by name.

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  16. final def asInstanceOf[T0]: T0
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  17. def canEqual(that: Any): Boolean
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  20. def collectFirst[B](pf: PartialFunction[(String, String), B]): Option[B]
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  24. def copyToArray[B >: (String, String)](xs: Array[B], start: Int): Unit
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  29. def dropWhile(p: ((String, String)) ⇒ Boolean): Iterable[(String, String)]
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  30. def ensuring(cond: (AssessPhasingMetric) ⇒ Boolean, msg: ⇒ Any): AssessPhasingMetric
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    This member is added by an implicit conversion from AssessPhasingMetric to Ensuring[AssessPhasingMetric] performed by method Ensuring in scala.Predef.
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  31. def ensuring(cond: (AssessPhasingMetric) ⇒ Boolean): AssessPhasingMetric
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  32. def ensuring(cond: Boolean, msg: ⇒ Any): AssessPhasingMetric
    Implicit
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  33. def ensuring(cond: Boolean): AssessPhasingMetric
    Implicit
    This member is added by an implicit conversion from AssessPhasingMetric to Ensuring[AssessPhasingMetric] performed by method Ensuring in scala.Predef.
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  34. final def eq(arg0: AnyRef): Boolean
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  35. def exists(p: ((String, String)) ⇒ Boolean): Boolean
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  36. def filter(p: ((String, String)) ⇒ Boolean): Iterable[(String, String)]
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  37. def filterNot(p: ((String, String)) ⇒ Boolean): Iterable[(String, String)]
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  38. def finalize(): Unit
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  39. def finalizeMetric(): AssessPhasingMetric.this.type
  40. def find(p: ((String, String)) ⇒ Boolean): Option[(String, String)]
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  41. def flatMap[B, That](f: ((String, String)) ⇒ GenTraversableOnce[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
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  42. def flatten[B](implicit asTraversable: ((String, String)) ⇒ GenTraversableOnce[B]): Iterable[B]
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  43. def fold[A1 >: (String, String)](z: A1)(op: (A1, A1) ⇒ A1): A1
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  44. def foldLeft[B](z: B)(op: (B, (String, String)) ⇒ B): B
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  45. def foldRight[B](z: B)(op: ((String, String), B) ⇒ B): B
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  46. def forall(p: ((String, String)) ⇒ Boolean): Boolean
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  47. def foreach[U](f: ((String, String)) ⇒ U): Unit
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  48. def formatValue(value: Any): String

    Override this method to customize how values are formatted.

    Override this method to customize how values are formatted.

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  49. def formatted(fmtstr: String): String
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  50. var frac_phased: Double
  51. var frac_phased_with_truth_phased: Double
  52. var frac_phased_with_truth_phased_in_called_block: Double
  53. var frac_truth_phased_in_called_block: Double
  54. def genericBuilder[B]: Builder[B, Iterable[B]]
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  55. def get(name: String): Option[String]

    Gets the value of the field by name, returns None if it does not exist.

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  56. final def getClass(): Class[_]
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  57. def groupBy[K](f: ((String, String)) ⇒ K): Map[K, Iterable[(String, String)]]
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  58. def grouped(size: Int): Iterator[Iterable[(String, String)]]
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  59. def hasDefiniteSize: Boolean
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  60. def head: (String, String)
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  61. def headOption: Option[(String, String)]
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  62. var illumina_long_accuracy: Double
  63. var illumina_point_accuracy: Double
  64. def init: Iterable[(String, String)]
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  65. def inits: Iterator[Iterable[(String, String)]]
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  67. final def isInstanceOf[T0]: Boolean
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  68. final def isTraversableAgain: Boolean
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  69. def iterator: Iterator[(String, String)]

    Gets an iterator over the fields of this metric in the order they were defined.

    Gets an iterator over the fields of this metric in the order they were defined. Returns tuples of names and values

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  70. var l50_called: Double
  71. var l50_truth: Double
  72. def last: (String, String)
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  73. def lastOption: Option[(String, String)]
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  74. var long_accuracy: Double
  75. def map[B, That](f: ((String, String)) ⇒ B)(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
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  76. def max[B >: (String, String)](implicit cmp: Ordering[B]): (String, String)
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  77. def maxBy[B](f: ((String, String)) ⇒ B)(implicit cmp: Ordering[B]): (String, String)
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  78. var mean_called_block_length: Double
  79. var mean_truth_block_length: Double
  80. var median_called_block_length: Double
  81. var median_truth_block_length: Double
  82. def min[B >: (String, String)](implicit cmp: Ordering[B]): (String, String)
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  83. def minBy[B](f: ((String, String)) ⇒ B)(implicit cmp: Ordering[B]): (String, String)
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  84. def mkString: String
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  85. def mkString(sep: String): String
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  86. def mkString(start: String, sep: String, end: String): String
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  87. var n50_called_block_length: Double
  88. var n50_truth_block_length: Double
  89. var n90_called_block_length: Double
  90. var n90_truth_block_length: Double
  91. def names: Seq[String]

    Get the names of the arguments in the order they were defined.

    Get the names of the arguments in the order they were defined.

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  92. final def ne(arg0: AnyRef): Boolean
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  93. def newBuilder: Builder[(String, String), Iterable[(String, String)]]
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  94. def nonEmpty: Boolean
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  95. final def notify(): Unit
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  96. final def notifyAll(): Unit
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  97. var num_both_phased_in_called_block: Long
  98. var num_called: Long
  99. var num_called_with_truth_phased: Long
  100. var num_illumina_long_switch_errors: Long
  101. var num_illumina_point_switch_errors: Long
  102. var num_illumina_switch_sites: Long
  103. var num_long_switch_errors: Long
  104. var num_phased: Long
  105. var num_phased_with_truth_phased: Long
  106. var num_short_switch_errors: Long
  107. var num_switch_sites: Long
  108. var num_truth: Long
  109. var num_truth_phased: Long
  110. var num_truth_phased_in_called_block: Long
  111. def par: ParIterable[(String, String)]
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  112. def parCombiner: Combiner[(String, String), ParIterable[(String, String)]]
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  113. def partition(p: ((String, String)) ⇒ Boolean): (Iterable[(String, String)], Iterable[(String, String)])
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  114. def product[B >: (String, String)](implicit num: Numeric[B]): B
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  115. def reduce[A1 >: (String, String)](op: (A1, A1) ⇒ A1): A1
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  116. def reduceLeft[B >: (String, String)](op: (B, (String, String)) ⇒ B): B
    Definition Classes
    TraversableOnce
  117. def reduceLeftOption[B >: (String, String)](op: (B, (String, String)) ⇒ B): Option[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  118. def reduceOption[A1 >: (String, String)](op: (A1, A1) ⇒ A1): Option[A1]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  119. def reduceRight[B >: (String, String)](op: ((String, String), B) ⇒ B): B
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  120. def reduceRightOption[B >: (String, String)](op: ((String, String), B) ⇒ B): Option[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  121. def repr: Iterable[(String, String)]
    Definition Classes
    TraversableLike → GenTraversableLike
  122. def reversed: List[(String, String)]
    Attributes
    protected[this]
    Definition Classes
    TraversableOnce
  123. def sameElements[B >: (String, String)](that: GenIterable[B]): Boolean
    Definition Classes
    IterableLike → GenIterableLike
  124. def scan[B >: (String, String), That](z: B)(op: (B, B) ⇒ B)(implicit cbf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  125. def scanLeft[B, That](z: B)(op: (B, (String, String)) ⇒ B)(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
  126. def scanRight[B, That](z: B)(op: ((String, String), B) ⇒ B)(implicit bf: CanBuildFrom[Iterable[(String, String)], B, That]): That
    Definition Classes
    TraversableLike → GenTraversableLike
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) The behavior of scanRight has changed. The previous behavior can be reproduced with scanRight.reverse.

  127. def seq: Iterable[(String, String)]
    Definition Classes
    Iterable → GenIterable → Traversable → GenTraversable → Parallelizable → TraversableOnce → GenTraversableOnce
  128. var short_accuracy: Double
  129. def size: Int
    Definition Classes
    TraversableOnce → GenTraversableOnce
  130. def sizeHintIfCheap: Int
    Attributes
    protected[scala.collection]
    Definition Classes
    GenTraversableOnce
  131. def slice(from: Int, until: Int): Iterable[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  132. def sliding(size: Int, step: Int): Iterator[Iterable[(String, String)]]
    Definition Classes
    IterableLike
  133. def sliding(size: Int): Iterator[Iterable[(String, String)]]
    Definition Classes
    IterableLike
  134. def span(p: ((String, String)) ⇒ Boolean): (Iterable[(String, String)], Iterable[(String, String)])
    Definition Classes
    TraversableLike → GenTraversableLike
  135. def splitAt(n: Int): (Iterable[(String, String)], Iterable[(String, String)])
    Definition Classes
    TraversableLike → GenTraversableLike
  136. var stddev_called_block_length: Double
  137. var stddev_truth_block_length: Double
  138. def stringPrefix: String
    Definition Classes
    TraversableLike → GenTraversableLike
  139. def sum[B >: (String, String)](implicit num: Numeric[B]): B
    Definition Classes
    TraversableOnce → GenTraversableOnce
  140. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  141. def tail: Iterable[(String, String)]
    Definition Classes
    TraversableLike → GenTraversableLike
  142. def tails: Iterator[Iterable[(String, String)]]
    Definition Classes
    TraversableLike
  143. def take(n: Int): Iterable[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  144. def takeRight(n: Int): Iterable[(String, String)]
    Definition Classes
    IterableLike
  145. def takeWhile(p: ((String, String)) ⇒ Boolean): Iterable[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableLike
  146. def thisCollection: Iterable[(String, String)]
    Attributes
    protected[this]
    Definition Classes
    IterableLike → TraversableLike
  147. def to[Col[_]](implicit cbf: CanBuildFrom[Nothing, (String, String), Col[(String, String)]]): Col[(String, String)]
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
  148. def toArray[B >: (String, String)](implicit arg0: ClassTag[B]): Array[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  149. def toBuffer[B >: (String, String)]: Buffer[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  150. def toCollection(repr: Iterable[(String, String)]): Iterable[(String, String)]
    Attributes
    protected[this]
    Definition Classes
    IterableLike → TraversableLike
  151. def toIndexedSeq: IndexedSeq[(String, String)]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  152. def toIterable: Iterable[(String, String)]
    Definition Classes
    IterableLike → TraversableOnce → GenTraversableOnce
  153. def toIterator: Iterator[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )
  154. def toList: List[(String, String)]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  155. def toMap[T, U](implicit ev: <:<[(String, String), (T, U)]): Map[T, U]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  156. def toParArray: ParArray[T]
    Implicit
    This member is added by an implicit conversion from AssessPhasingMetric to CollectionsHaveToParArray[AssessPhasingMetric, T] performed by method CollectionsHaveToParArray in scala.collection.parallel. This conversion will take place only if an implicit value of type (AssessPhasingMetric) ⇒ GenTraversableOnce[T] is in scope.
    Definition Classes
    CollectionsHaveToParArray
  157. def toSeq: Seq[(String, String)]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  158. def toSet[B >: (String, String)]: Set[B]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  159. def toStream: Stream[(String, String)]
    Definition Classes
    IterableLike → TraversableLike → GenTraversableOnce
  160. def toString(): String
    Definition Classes
    Metric → TraversableLike → AnyRef → Any
  161. def toTraversable: Traversable[(String, String)]
    Definition Classes
    TraversableLike → TraversableOnce → GenTraversableOnce
    Annotations
    @deprecatedOverriding( ... , "2.11.0" )
  162. def toVector: Vector[(String, String)]
    Definition Classes
    TraversableOnce → GenTraversableOnce
  163. def transpose[B](implicit asTraversable: ((String, String)) ⇒ GenTraversableOnce[B]): Iterable[Iterable[B]]
    Definition Classes
    GenericTraversableTemplate
    Annotations
    @migration
    Migration

    (Changed in version 2.9.0) transpose throws an IllegalArgumentException if collections are not uniformly sized.

  164. def unzip[A1, A2](implicit asPair: ((String, String)) ⇒ (A1, A2)): (Iterable[A1], Iterable[A2])
    Definition Classes
    GenericTraversableTemplate
  165. def unzip3[A1, A2, A3](implicit asTriple: ((String, String)) ⇒ (A1, A2, A3)): (Iterable[A1], Iterable[A2], Iterable[A3])
    Definition Classes
    GenericTraversableTemplate
  166. def values: Seq[String]

    Get the values of the arguments in the order they were defined.

    Get the values of the arguments in the order they were defined.

    Definition Classes
    Metric
  167. def view(from: Int, until: Int): IterableView[(String, String), Iterable[(String, String)]]
    Definition Classes
    IterableLike → TraversableLike
  168. def view: IterableView[(String, String), Iterable[(String, String)]]
    Definition Classes
    IterableLike → TraversableLike
  169. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  170. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  171. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  172. def withFilter(p: ((String, String)) ⇒ Boolean): FilterMonadic[(String, String), Iterable[(String, String)]]
    Definition Classes
    TraversableLike → FilterMonadic
  173. def zip[A1 >: (String, String), B, That](that: GenIterable[B])(implicit bf: CanBuildFrom[Iterable[(String, String)], (A1, B), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  174. def zipAll[B, A1 >: (String, String), That](that: GenIterable[B], thisElem: A1, thatElem: B)(implicit bf: CanBuildFrom[Iterable[(String, String)], (A1, B), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  175. def zipWithIndex[A1 >: (String, String), That](implicit bf: CanBuildFrom[Iterable[(String, String)], (A1, Int), That]): That
    Definition Classes
    IterableLike → GenIterableLike
  176. def →[B](y: B): (AssessPhasingMetric, B)
    Implicit
    This member is added by an implicit conversion from AssessPhasingMetric to ArrowAssoc[AssessPhasingMetric] performed by method ArrowAssoc in scala.Predef.
    Definition Classes
    ArrowAssoc

Shadowed Implicit Value Members

  1. def filter(p: ((String, String)) ⇒ Boolean): TraversableOnce[(String, String)]
    Implicit
    This member is added by an implicit conversion from AssessPhasingMetric to MonadOps[(String, String)] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (assessPhasingMetric: MonadOps[(String, String)]).filter(p)
    Definition Classes
    MonadOps
  2. def flatMap[B](f: ((String, String)) ⇒ GenTraversableOnce[B]): TraversableOnce[B]
    Implicit
    This member is added by an implicit conversion from AssessPhasingMetric to MonadOps[(String, String)] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (assessPhasingMetric: MonadOps[(String, String)]).flatMap(f)
    Definition Classes
    MonadOps
  3. def map[B](f: ((String, String)) ⇒ B): TraversableOnce[B]
    Implicit
    This member is added by an implicit conversion from AssessPhasingMetric to MonadOps[(String, String)] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (assessPhasingMetric: MonadOps[(String, String)]).map(f)
    Definition Classes
    MonadOps
  4. def withFilter(p: ((String, String)) ⇒ Boolean): Iterator[(String, String)]
    Implicit
    This member is added by an implicit conversion from AssessPhasingMetric to MonadOps[(String, String)] performed by method MonadOps in scala.collection.TraversableOnce.
    Shadowing
    This implicitly inherited member is shadowed by one or more members in this class.
    To access this member you can use a type ascription:
    (assessPhasingMetric: MonadOps[(String, String)]).withFilter(p)
    Definition Classes
    MonadOps

Deprecated Value Members

  1. def formatValues(value: Any): String

    Attributes
    protected
    Definition Classes
    Metric
    Annotations
    @deprecated
    Deprecated

    (Since version 0.5.0) Use formatValue instead.

Inherited from Serializable

Inherited from Serializable

Inherited from Metric

Inherited from Iterable[(String, String)]

Inherited from IterableLike[(String, String), Iterable[(String, String)]]

Inherited from GenIterable[(String, String)]

Inherited from GenIterableLike[(String, String), Iterable[(String, String)]]

Inherited from Traversable[(String, String)]

Inherited from GenTraversable[(String, String)]

Inherited from GenericTraversableTemplate[(String, String), Iterable]

Inherited from TraversableLike[(String, String), Iterable[(String, String)]]

Inherited from GenTraversableLike[(String, String), Iterable[(String, String)]]

Inherited from Parallelizable[(String, String), ParIterable[(String, String)]]

Inherited from TraversableOnce[(String, String)]

Inherited from GenTraversableOnce[(String, String)]

Inherited from FilterMonadic[(String, String), Iterable[(String, String)]]

Inherited from HasNewBuilder[(String, String), Iterable[(String, String)] @scala.annotation.unchecked.uncheckedVariance]

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Inherited by implicit conversion MonadOps from AssessPhasingMetric to MonadOps[(String, String)]

Inherited by implicit conversion CollectionsHaveToParArray from AssessPhasingMetric to CollectionsHaveToParArray[AssessPhasingMetric, T]

Inherited by implicit conversion any2stringadd from AssessPhasingMetric to any2stringadd[AssessPhasingMetric]

Inherited by implicit conversion StringFormat from AssessPhasingMetric to StringFormat[AssessPhasingMetric]

Inherited by implicit conversion Ensuring from AssessPhasingMetric to Ensuring[AssessPhasingMetric]

Inherited by implicit conversion ArrowAssoc from AssessPhasingMetric to ArrowAssoc[AssessPhasingMetric]

Inherited by implicit conversion alternateImplicit from AssessPhasingMetric to ForceImplicitAmbiguity

Ungrouped