Value Members

1.  final def !=(arg0: Any): Boolean

   Definition Classes

   AnyRef → Any

2.  final def ##(): Int

   Definition Classes

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3.  final def ==(arg0: Any): Boolean

   Definition Classes

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4.  val LikelihoodChangeFormatDescription: String
5.  val LikelihoodChangeFormatHeaderLine: VCFFormatHeaderLine
6.  val LikelihoodChangeFormatTag: String
7.  val MaxLikelihoodChangeFormatDescription: String
8.  val MaxLikelihoodChangeFormatHeaderLine: VCFFormatHeaderLine
9.  val MaxLikelihoodChangeFormatTag: String
10.  val MecReductionFormatDescription: String
11.  val MecReductionFormatHeaderLine: VCFFormatHeaderLine
12.  val MecReductionFormatTag: String
13.  val NotPhasedFilterDescription: String

    Definition Classes

    HeaderLines

14.  val NotPhasedFilterHeaderLine: VCFFilterHeaderLine

    Definition Classes

    HeaderLines

15.  val NotPhasedFilterName: String

    Definition Classes

    HeaderLines

16.  val PhaseSetFormatDescription: String

    Definition Classes

    HeaderLines

17.  val PhaseSetFormatHeaderLine: VCFFormatHeaderLine

    Definition Classes

    HeaderLines

18.  val PhaseSetFormatTag: String

    Definition Classes

    HeaderLines

19.  val ReadCountFormatDescription: String
20.  val ReadCountFormatHeaderLine: VCFFormatHeaderLine
21.  val ReadCountFormatTag: String
22.  final def asInstanceOf[T0]: T0

    Definition Classes

    Any

23.  def clone(): AnyRef

    Attributes

    protected[java.lang]

    Definition Classes

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    Annotations

    @throws( ... )

24.  final def eq(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

25.  def equals(arg0: Any): Boolean

    Definition Classes

    AnyRef → Any

26.  def finalize(): Unit

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

27.  val formatHeaderKeys: Seq[String]

    The VCF header FORMAT keys that will be added for HapCut1 specific-genotype information.

28.  val formatHeaderLines: Seq[VCFHeaderLine]

    The VCF header FORMAT lines that will be added for HapCut1 specific-genotype information.

29.  final def getClass(): Class[_]

    Definition Classes

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30.  def hashCode(): Int

    Definition Classes

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31.  final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

32.  final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

33.  final def notify(): Unit

    Definition Classes

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34.  final def notifyAll(): Unit

    Definition Classes

    AnyRef

35.  final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

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36.  def toString(): String

    Definition Classes

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37.  final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

38.  final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

39.  final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )