Value Members

1.  final def !=(arg0: Any): Boolean

   Definition Classes

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2.  final def ##(): Int

   Definition Classes

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3.  final def ==(arg0: Any): Boolean

   Definition Classes

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4.  val NoErrorFormatDescription: String
5.  val NoErrorFormatHeaderLine: VCFFormatHeaderLine
6.  val NoErrorFormatTag: String
7.  val NotPhasedFilterDescription: String

   Definition Classes

   HeaderLines

8.  val NotPhasedFilterHeaderLine: VCFFilterHeaderLine

   Definition Classes

   HeaderLines

9.  val NotPhasedFilterName: String

   Definition Classes

   HeaderLines

10.  val PhaseSetFormatDescription: String

    Definition Classes

    HeaderLines

11.  val PhaseSetFormatHeaderLine: VCFFormatHeaderLine

    Definition Classes

    HeaderLines

12.  val PhaseSetFormatTag: String

    Definition Classes

    HeaderLines

13.  val PrunedFormatDescription: String
14.  val PrunedFormatHeaderLine: VCFFormatHeaderLine
15.  val PrunedFormatTag: String
16.  val SwitchErrorFormatDescription: String
17.  val SwitchErrorFormatHeaderLine: VCFFormatHeaderLine
18.  val SwitchErrorFormatTag: String
19.  final def asInstanceOf[T0]: T0

    Definition Classes

    Any

20.  def clone(): AnyRef

    Attributes

    protected[java.lang]

    Definition Classes

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    Annotations

    @throws( ... )

21.  final def eq(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

22.  def equals(arg0: Any): Boolean

    Definition Classes

    AnyRef → Any

23.  def finalize(): Unit

    Attributes

    protected[java.lang]

    Definition Classes

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    Annotations

    @throws( classOf[java.lang.Throwable] )

24.  val formatHeaderKeys: Seq[String]

    The VCF header FORMAT keys that will be added for HapCut2 specific-genotype information.

25.  val formatHeaderLines: Seq[VCFHeaderLine]

    The VCF header FORMAT lines that will be added for HapCut2 specific-genotype information.

26.  final def getClass(): Class[_]

    Definition Classes

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27.  def hashCode(): Int

    Definition Classes

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28.  final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

29.  final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

30.  final def notify(): Unit

    Definition Classes

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31.  final def notifyAll(): Unit

    Definition Classes

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32.  final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

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33.  def toString(): String

    Definition Classes

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34.  final def wait(): Unit

    Definition Classes

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    Annotations

    @throws( ... )

35.  final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

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    Annotations

    @throws( ... )

36.  final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )