object ByIntervalListVariantContextIterator
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def
apply(reader: VCFFileReader, intervalList: IntervalList): Iterator[VariantContext]
Creates an iterator over variant contexts that overlap any interval in an interval list.
Creates an iterator over variant contexts that overlap any interval in an interval list.
The interval lists should be sorted and uniqued.
The VCF will be queried when moving to the next variant context, and so may be quite slow if we jump around the VCF a lot.
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def
apply(iterator: Iterator[VariantContext], intervalList: IntervalList, dict: SAMSequenceDictionary): Iterator[VariantContext]
Creates an iterator over variant contexts that overlap any interval in an interval list.
Creates an iterator over variant contexts that overlap any interval in an interval list.
All variants will be read in and compared to the intervals.
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